rna798, rna798 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna798
Unique Name	rna798
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	231
Alignment location	CM002456.1:443229..445477 +

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Properties


Property Name	Value
Product	ethylmalonic encephalopathy 1
Orig transcript id	gnl\|cribi\|Naga_100106g12.1450.mrna
Orig protein id	gnl\|cribi\|Naga_100106g12.1450
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:443229..445477 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100106g12	gene764	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna798	rna798-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM29876.1	cds798	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:443229..445477+
coding sequence from alignment at CM002456.1:443229..445477+

mRNA sequence

>rna798 ID=rna798|Name=rna798|organism=Nannochloropsis gaditana|type=mRNA|length=231bp
ATGTTCAAGATCCCCAGGAGCGGGAGGGCCGAGGGTGAAGATGGGAACGT
ATCCGGCGGTCTCCACAAACTGTTGGCTCTACGCAGTCTTGAAAAAAAAA
TGACAGAAGAGAGAATGAGACGCTGCGCTAATGATTTTGCCTGCGCGTAC
ACTTTCGATCACCAACAAGCATCGGGAACAAGACACAAAAAACGGCTTCC
GCCAACAAGAAACAACAAGGAACTTGGATGA

protein sequence of rna798

>rna798-protein ID=rna798-protein|Name=rna798|organism=Nannochloropsis gaditana|type=polypeptide|length=454bp
MILVDSLRERGTRSPAASNNMSSALYSPWRPLVIFYGICCYSATAFMSST
PFCTRGVPKSIRSRSFGSSRLASTMTVTAADITTAGKLGEAETSALSDKY
KSVLYLATDKGADKGIEPNGFASLRGLTTRHLPVDVKDGLSLQLATDALQ
ALDELPAPALVVCSSGGRASAVQCLRKATEEGWTKDQTLAYALEMKLPFV
KNPSLKDWVLATVAAREYKDELPLLFRPLYEETSWTYTFLLGCPVTKEAI
LIDPVDLTVERDLQVIKEMGLTLVAALNTHCHADHVTGSGLLAQKVPGCK
SMIAKISGAKASIHLEPGNRVRFGRRYVEARATPGHTNGCMTFVTDDMKM
AFTGDALLIRGCGRTDFQQGSPETMFESIWTQIFSLPHETSVYPGHDYRG
RLMSTIGEEKRFNSRLSGKSKEEFIEIMNNLKLAYPKKIDVALPANLVDG
VLAS

mRNA from alignment at CM002456.1:443229..445477+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna798 ID=rna798|Name=rna798|organism=Nannochloropsis gaditana|type=mRNA|length=2249bp|location=Sequence derived from alignment at CM002456.1:443229..445477+ (Nannochloropsis gaditana)
CGCTCTGGATCCTCCGCCCTTGAGGCTTATGTCCCCGCATGTTTTCAAAG
GAACATGTCGGCGTCGCTTCTCAATTCGGTGGAGATTTGAAGCGGAACAA
AATTTTCTCGTGCGAACTGCGATATTGGTGACCTTTGGCTTCCATCTCCG
ACATGATATTAGTAGATTCGCTtagggaaagaggcaccCGGTCGCCGGCT
GCATCCAACAACATGTCCTCAGCTCTCTACTCCCCATGGCGGCCACTCGT
CATTTTTTACGGTATTTGCTGCTATAGTGCCACTGCCTTTATGTCGAGCA
CGCCATTTTGTACCCGTGGTGTGCCAAAGGTAGGATTTTGGTCAGAGTCT
CCTCCGACCCGCTCGGGCTGGTGTTGCGGGGTGCCAAGTTGAAGCATTCG
GCAGCATTCTCCCTTTTCGAAACGTGTCCTGCCATGTGGTAACTtacgcc
tttcttttcccaccatCTGGGCACGTACATTTTTTCAGTCCATTAGGAGT
AGAAGCTTTGGGTCATCACGGTTGGCCAGCACTATGACCGTGACGGCTGC
GGACATCACGACGGCAGGTAAACTGGGCGAGGCTGAGACAAGCGCTCTCT
CCGACAAGTACAAGAGTGTCCTATATTTGGCCACCGATAAGGGCGCAGAC
AAAGGCATTGAGCCCAACGGATTCGCCTCTCTACGTGGACTTACTACTCG
TCATTTGCCGGTTGATGTGAAGGTAAGTTGATGCCAAATGGTGTTGCTAG
AACACTTTCGCAAGACGTATGTCCCAAGTCTACAATGCGGGATGGTATCA
AGCACAACACTAAAATAAATGCTcggcgggcgggagaaagaaaataCGAA
TCTATATGCATTTTAAAAGCTGGAAGCCTTGGGATGAACGTAGCTTTTAA
TGTATGGAAAGAAAACGTTGCCGctgccgaagaggaggcggatcCCTCAT
CCCTCGCTATGTCTCTTCTCAAACCTCACCCGCGGCCCATCTTCCTTATc
cttcctgcttttccttaGGACGGGCTTTCGCTACAACTGGCCACGGATGC
CCTACAGGCTTTGGACGAgctgcccgcccccgccttaGTGGTCTGTAGct
cgggggggcgggcctccGCAGTGCAGTGCCTCCGTAAGGcgacagaggag
gggtggacgaAAGACCAAACACTCGCTTACGCGCTGGAAATGAAGTTACC
GTTCGTAAAGAATCCGAGCCTCAAAGATTGGGTGCTGGCTACCGTCGCCG
CCAGGGAATACAAGGACGAGCTTCCATTGCTGTTCCGTCCCCTATACGAA
GAGACGTCCTGGACTTACACCTTCTTATTGGGCTGCCCCGTGACCAAAGA
GGCCATCCTGATCGATCCAGTGGATCTGACTGTGGAGAGGGACTTGCAGG
TGATCAAAGAGATGGGCCTCACCCTCGTGGCCGCTCTCAACACGCATTGC
CACGCCGACCACGTGACGGGAAGCGGACTCCTCGCACAGAAAGTACCGGG
CTGCAAGTCCATGATCGCAAAAATATCGGGCGCCAAAGCGAGCATTCATT
TGGAGCCCGGGAACCGGGTTCGATTCGGGCGTCGTTATGTGGAAGCGCGT
GCCACGCCGGGGCACACGAACGGATGCATGACTTTCGTCACGGACGACAT
GAAGATGGCTTTCACAGGGGACGCATTGTTGATCAGAGGCTGCGGGCGCA
CGGATTTCCAGCAGGGATCTCCAGAGACGATGTTTGAGAGCATCTGGACG
CAGATTTTCTCCTTACCGCACGAGACCTCGGTGTATCCGGGGCATGACTA
CAGGGGCCGGCTGATGTCGACCatcggggaggagaaacgctTCAACTCCC
GTTTGTCCGGAAAGTCGAAGGAGGAATTCATAGAAATCATGAACAATTTG
AAACTGGCGTACCCGAAGAAGATCGACGTGGCATTGCCGGCCAACCTGGT
GGACGGGGTGCTGGCTAGCTAGGAAAGTGGGTTACCTGGCTAGCTAGGGA
GGGTTACTCGTCTCAAGTTCATGGCGAGCGAATGAATGATCGGGAGGGAC
TATGATCGGGATGGTCGGCGGGCAATTATGCAGGGCATGCTAGTATGAGT
GCAAGGTAGAATGCTACGGACGTCATGGTGAAGCTCGACGACGCTTCCCA
CAATCAGATAGCGGTGGGTCTCGGTTGGGACGCATAACCTCCATTTCTGC
CCTTGAACGACCAAAGAAAGAAGTGGAAAAAATACAACCCGCCCGGACA

Coding sequence (CDS) from alignment at CM002456.1:443229..445477+

>rna798 ID=rna798|Name=rna798|organism=Nannochloropsis gaditana|type=CDS|length=4095bp|location=Sequence derived from alignment at CM002456.1:443229..445477+ (Nannochloropsis gaditana)
ATGATATTAGTAGATTCGCTtagggaaagaggcaccCGGTCGCCGGCTGC
ATCCAACAACATGTCCTCAGCTCTCTACTCCCCATGGCGGCCACTCGTCA
TTTTTTACGGTATTTGCTGCTATAGTGCCACTGCCTTTATGTCGAGCACG
CCATTTTGTACCCGTGGTGTGCCAAAGTCCATTAGGAGTAGAAGCTTTGG
GTCATCACGGTTGGCCAGCACTATGACCGTGACGGCTGCGGACATCACGA
CGGCAGGTAAACTGGGCGAGGCTGAGACAAGCGCTCTCTCCGACAAGTAC
AAGAGTGTCCTATATTTGGCCACCGATAAGGGCGCAGACAAAGGCATTGA
GCCCAACGGATTCGCCTCTCTACGTGGACTTACTACTCGTCATTTGCCGG
TTGATGTGAAGGACGGGCTTTCGCTACAACTGGCCACGGATGCCCTACAG
GCTTTGGACGAgctgcccgcccccgccttaGTGGTCTGTAGctcgggggg
gcgggcctccGCAGTGCAGTGCCTCCGTAAGGcgacagaggaggggtgga
cgaAAGACCAAACACTCGCTTACGCGCTGGAAATGAAGTTACCGTTCGTA
AAGAATCCGAGCCTCAAAGATTGGGTGCTGGCTACCGTCGCCGCCAGGGA
ATACAAGGACGAGCTTCCATTGCTGTTCCGTCCCCTATACGAAGAGACGT
CCTGGACTTACACCTTCTTATTGGGCTGCCCCGTGACCAAAGAGGCCATC
CTGATCGATCCAGTGGATCTGACTGTGGAGAGGGACTTGCAGGTGATCAA
AGAGATGGGCCTCACCCTCGTGGCCGCTCTCAACACGCATTGCCACGCCG
ACCACGTGACGGGAAGCGGACTCCTCGCACAGAAAGTACCGGGCTGCAAG
TCCATGATCGCAAAAATATCGGGCGCCAAAGCGAGCATTCATTTGGAGCC
CGGGAACCGGGTTCGATTCGGGCGTCGTTATGTGGAAGCGCGTGCCACGC
CGGGGCACACGAACGGATGCATGACTTTCGTCACGGACGACATGAAGATG
GCTTTCACAGGGGACGCATTGTTGATCAGAGGCTGCGGGCGCACGGATTT
CCAGCAGGGATCTCCAGAGACGATGTTTGAGAGCATCTGGACGCAGATTT
TCTCCTTACCGCACGAGACCTCGGTGTATCCGGGGCATGACTACAGGGGC
CGGCTGATGTCGACCatcggggaggagaaacgctTCAACTCCCGTTTGTC
CGGAAAGTCGAAGGAGGAATTCATAGAAATCATGAACAATTTGAAACTGG
CGTACCCGAAGAAGATCGACGTGGCATTGCCGGCCAACCTGGTGGACGGG
GTGCTGGCTAGCTAGATGATATTAGTAGATTCGCTtagggaaagaggcac
cCGGTCGCCGGCTGCATCCAACAACATGTCCTCAGCTCTCTACTCCCCAT
GGCGGCCACTCGTCATTTTTTACGGTATTTGCTGCTATAGTGCCACTGCC
TTTATGTCGAGCACGCCATTTTGTACCCGTGGTGTGCCAAAGTCCATTAG
GAGTAGAAGCTTTGGGTCATCACGGTTGGCCAGCACTATGACCGTGACGG
CTGCGGACATCACGACGGCAGGTAAACTGGGCGAGGCTGAGACAAGCGCT
CTCTCCGACAAGTACAAGAGTGTCCTATATTTGGCCACCGATAAGGGCGC
AGACAAAGGCATTGAGCCCAACGGATTCGCCTCTCTACGTGGACTTACTA
CTCGTCATTTGCCGGTTGATGTGAAGGACGGGCTTTCGCTACAACTGGCC
ACGGATGCCCTACAGGCTTTGGACGAgctgcccgcccccgccttaGTGGT
CTGTAGctcgggggggcgggcctccGCAGTGCAGTGCCTCCGTAAGGcga
cagaggaggggtggacgaAAGACCAAACACTCGCTTACGCGCTGGAAATG
AAGTTACCGTTCGTAAAGAATCCGAGCCTCAAAGATTGGGTGCTGGCTAC
CGTCGCCGCCAGGGAATACAAGGACGAGCTTCCATTGCTGTTCCGTCCCC
TATACGAAGAGACGTCCTGGACTTACACCTTCTTATTGGGCTGCCCCGTG
ACCAAAGAGGCCATCCTGATCGATCCAGTGGATCTGACTGTGGAGAGGGA
CTTGCAGGTGATCAAAGAGATGGGCCTCACCCTCGTGGCCGCTCTCAACA
CGCATTGCCACGCCGACCACGTGACGGGAAGCGGACTCCTCGCACAGAAA
GTACCGGGCTGCAAGTCCATGATCGCAAAAATATCGGGCGCCAAAGCGAG
CATTCATTTGGAGCCCGGGAACCGGGTTCGATTCGGGCGTCGTTATGTGG
AAGCGCGTGCCACGCCGGGGCACACGAACGGATGCATGACTTTCGTCACG
GACGACATGAAGATGGCTTTCACAGGGGACGCATTGTTGATCAGAGGCTG
CGGGCGCACGGATTTCCAGCAGGGATCTCCAGAGACGATGTTTGAGAGCA
TCTGGACGCAGATTTTCTCCTTACCGCACGAGACCTCGGTGTATCCGGGG
CATGACTACAGGGGCCGGCTGATGTCGACCatcggggaggagaaacgctT
CAACTCCCGTTTGTCCGGAAAGTCGAAGGAGGAATTCATAGAAATCATGA
ACAATTTGAAACTGGCGTACCCGAAGAAGATCGACGTGGCATTGCCGGCC
AACCTGGTGGACGGGGTGCTGGCTAGCTAGATGATATTAGTAGATTCGCT
tagggaaagaggcaccCGGTCGCCGGCTGCATCCAACAACATGTCCTCAG
CTCTCTACTCCCCATGGCGGCCACTCGTCATTTTTTACGGTATTTGCTGC
TATAGTGCCACTGCCTTTATGTCGAGCACGCCATTTTGTACCCGTGGTGT
GCCAAAGTCCATTAGGAGTAGAAGCTTTGGGTCATCACGGTTGGCCAGCA
CTATGACCGTGACGGCTGCGGACATCACGACGGCAGGTAAACTGGGCGAG
GCTGAGACAAGCGCTCTCTCCGACAAGTACAAGAGTGTCCTATATTTGGC
CACCGATAAGGGCGCAGACAAAGGCATTGAGCCCAACGGATTCGCCTCTC
TACGTGGACTTACTACTCGTCATTTGCCGGTTGATGTGAAGGACGGGCTT
TCGCTACAACTGGCCACGGATGCCCTACAGGCTTTGGACGAgctgcccgc
ccccgccttaGTGGTCTGTAGctcgggggggcgggcctccGCAGTGCAGT
GCCTCCGTAAGGcgacagaggaggggtggacgaAAGACCAAACACTCGCT
TACGCGCTGGAAATGAAGTTACCGTTCGTAAAGAATCCGAGCCTCAAAGA
TTGGGTGCTGGCTACCGTCGCCGCCAGGGAATACAAGGACGAGCTTCCAT
TGCTGTTCCGTCCCCTATACGAAGAGACGTCCTGGACTTACACCTTCTTA
TTGGGCTGCCCCGTGACCAAAGAGGCCATCCTGATCGATCCAGTGGATCT
GACTGTGGAGAGGGACTTGCAGGTGATCAAAGAGATGGGCCTCACCCTCG
TGGCCGCTCTCAACACGCATTGCCACGCCGACCACGTGACGGGAAGCGGA
CTCCTCGCACAGAAAGTACCGGGCTGCAAGTCCATGATCGCAAAAATATC
GGGCGCCAAAGCGAGCATTCATTTGGAGCCCGGGAACCGGGTTCGATTCG
GGCGTCGTTATGTGGAAGCGCGTGCCACGCCGGGGCACACGAACGGATGC
ATGACTTTCGTCACGGACGACATGAAGATGGCTTTCACAGGGGACGCATT
GTTGATCAGAGGCTGCGGGCGCACGGATTTCCAGCAGGGATCTCCAGAGA
CGATGTTTGAGAGCATCTGGACGCAGATTTTCTCCTTACCGCACGAGACC
TCGGTGTATCCGGGGCATGACTACAGGGGCCGGCTGATGTCGACCatcgg
ggaggagaaacgctTCAACTCCCGTTTGTCCGGAAAGTCGAAGGAGGAAT
TCATAGAAATCATGAACAATTTGAAACTGGCGTACCCGAAGAAGATCGAC
GTGGCATTGCCGGCCAACCTGGTGGACGGGGTGCTGGCTAGCTAG

Synonyms

Publications