rna7978, rna7978 (mRNA) Nannochloropsis gaditana

Overview
Namerna7978
Unique Namerna7978
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1182
Alignment locationKK037247.1:273553..274411 -

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Properties
Property NameValue
Productlight-harvesting protein
Orig transcript idgnl|cribi|Naga_100641g3.3004.mrna
Orig protein idgnl|cribi|Naga_100641g3.3004
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:273553..274411 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100641g3gene7725Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7978rna7978-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22717.1cds7956Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7978 ID=rna7978|Name=rna7978|organism=Nannochloropsis gaditana|type=mRNA|length=1182bp
ATGACTCGTCCATTAGCATTCTTGGTTATTGTGGTCGTGGTGGAGTACAA
CGTGGTGTGCTGTCTAACTCCCAACATCATTCCTTATCGCTGCCAAAGAA
AGAAGAAGAACGTCTGCAAGGAAGTGAGGAGTGCTTGCCGCCTTTTCAAC
ACGGAGAAATCGGTCGTTCGTCTTCGCTGCCCGACAAGCCCGACAGGTAC
ATCCACACGGAGCGATATGAATGGAGACAGGCAAGTGACGAACGTGGAGA
AAAGAGCCTCGTTCTCCTCCTTCCTTCTCCAGCTACCAAACATCCTCCTT
CAGGCCACCAACAATGTGCTGCACCTTCCCATCCTCTTTGACCTCGCCTG
GTATGTGGTGTGGGCTTTCTACATCGCCATGGCCCCTTTCTACCTCCTTT
GTCACATCCTCTTCTTCGTGCTCGACACCCTTTTTGCCATCTACTCGTTC
GCACGCCAGAAAGTCAAGAGTCTGATCCTATTTATGAAGGGGAAAAAGGG
CGAGGCCAGAGAGGAGCGGGCCATCCTCATCACGGGCTGTGACTCGGGCT
TCGGATTCGATTTGGCCATGGCTTTGGCCGCCGAAAGTTTGGCGTGTCGG
GAGGAGGAAAAGAAGGAGGGGAGGAGGGAGGAGCCAAGGGGGAGGAGGTG
GAAAGTGTACGCTGGTTGTCTCTCAGCCACGGGCCGTGAGCAGATAACCC
AGAGGGCGCCGGAGGCCGCAGCGCACGGCATTCTGGTCCCCCTCTCCCTG
GACGTGACCCAGGCCTCTGAGGTGGCGACGGCGGTCGACAGGGTGCGCGC
CGAATGCCGTGGAGAGCTATTTGCCCTCGTCAACAACGCCGGCATCGGCG
TCGCCGGCCTGGTGGATTGGGTGCCGATGGAGCACTTTCGCAAGATCATG
GAAGTGAACTATTTCGGCATGATCGCCGTCAGCAAGGCTTGTCTTCCCCT
CCTGAAAAAGCGGGCAAGCAGGGCATGCGACGCGCCTCCCCGCATCGTCC
TCGTCACGTCCTTCGCCGGCCTGGTGCCCGGTCAGCTCTCCATGGGCGCC
TACTGCGCTTCCAAGCACGCGGCCGAGGCCTTCGGGTATGGCAGGGGGGG
AGGGCAGGAGAGAGGGCGGGAGGGAACAAGACAGGGAGGAAGTCGAGGAC
GGGATGAACATGCGTTGCACGCGACGCGGTAG
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protein sequence of rna7978

>rna7978-protein ID=rna7978-protein|Name=rna7978|organism=Nannochloropsis gaditana|type=polypeptide|length=220bp
MKTVFALAALLPCAAGFVAPVAFPTASSAGKAVRGRTTMMAERSKSLPFL
MKPKNLDGSMAGDVGFDPLGLSEINEVGIDLYWLREAELKHCRLGMMAAA
GILFVEAVGPAPGFPSTKSQMDAFWTVYAEKPSLVGAALVAIAILEVISG
VATTQGRQNGDRAPGDYNFDPLGFGKDPAKFKDLQLKEVKNGRLAMIAAA
GMILQGVSTHQGALQNLNGN
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mRNA from alignment at KK037247.1:273553..274411-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7978 ID=rna7978|Name=rna7978|organism=Nannochloropsis gaditana|type=mRNA|length=859bp|location=Sequence derived from alignment at KK037247.1:273553..274411- (Nannochloropsis gaditana)
ATGAAGACAGTATTTGCTCTTGCTGCCCTCCTCCCATGCGCGGCTGGTTT
TGTGGCTCCGGTGGCCTTCCCCACAGCCTCCTCCGCAGGGAAAGCCGTGC
GAGGCCGCACTACCATGATGGCGGAACGATCCAAGTCCCTTCCCTTCCTG
ATGAAGCCCAAGAACTTGGACGGGTCCATGGCGGGTGACGTTGGCTTCGA
CCCCTTGGGCCTGTCAGAGATCAACGAAGTCGGCATCGACCTGTACTGGT
TGCGGGAGGCGGAACTCAAGCACTGCCGCCTCGGGATGATGGCCGCGGCC
GGCATTCTCTTCGTGGAGGCTGTGGGACCCGCCCCCGGTTTCCCCTCCAC
CAAGAGCCAAATGGATGCGTTCTGGACCGTGTACGCCGAGAAGCCTTCCC
TCGTGGGGGCGGCCTTGGTAGCTATTGCGATTTTGGAAGTGATCTCGGGT
GTCGCCACCACCCAGGGCCGTCAAAACGGGGACCGAGCGCCCGGCGACTA
CAACTTCGACCCCCTGGGCTTTGGAAAGGACCCCGCCAAGTTCAAAGACT
TGCAGGTGAGGATTGCAGAGGGGCGATGCCAGAAGAGAGGCCCCCAGAGA
TGTATTGGAGACGTACAGCATCTACAACCGCTGTCGCGGTCTTGACAGCA
GAATGTTCCATATGCCTTCTATGCTCGTAGCTCGTAATGACAACGATTAT
TATCATGTAATGTAATGTAATAATTATTCTTGCCTTTTCAAACCTCTATA
GCTCAAGGAAGTGAAGAACGGCCGCCTTGCCATGATTGCTGCCGCAGGCA
TGATTCTTCAAGGTGTCTCCACTCACCAAGGTGCATTGCAAAACTTGAAC
GGAAACTAG
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Coding sequence (CDS) from alignment at KK037247.1:273553..274411-

>rna7978 ID=rna7978|Name=rna7978|organism=Nannochloropsis gaditana|type=CDS|length=1326bp|location=Sequence derived from alignment at KK037247.1:273553..274411- (Nannochloropsis gaditana)
CTCAAGGAAGTGAAGAACGGCCGCCTTGCCATGATTGCTGCCGCAGGCAT
GATTCTTCAAGGTGTCTCCACTCACCAAGGTGCATTGCAAAACTTGAACG
GAAACTAGATGAAGACAGTATTTGCTCTTGCTGCCCTCCTCCCATGCGCG
GCTGGTTTTGTGGCTCCGGTGGCCTTCCCCACAGCCTCCTCCGCAGGGAA
AGCCGTGCGAGGCCGCACTACCATGATGGCGGAACGATCCAAGTCCCTTC
CCTTCCTGATGAAGCCCAAGAACTTGGACGGGTCCATGGCGGGTGACGTT
GGCTTCGACCCCTTGGGCCTGTCAGAGATCAACGAAGTCGGCATCGACCT
GTACTGGTTGCGGGAGGCGGAACTCAAGCACTGCCGCCTCGGGATGATGG
CCGCGGCCGGCATTCTCTTCGTGGAGGCTGTGGGACCCGCCCCCGGTTTC
CCCTCCACCAAGAGCCAAATGGATGCGTTCTGGACCGTGTACGCCGAGAA
GCCTTCCCTCGTGGGGGCGGCCTTGGTAGCTATTGCGATTTTGGAAGTGA
TCTCGGGTGTCGCCACCACCCAGGGCCGTCAAAACGGGGACCGAGCGCCC
GGCGACTACAACTTCGACCCCCTGGGCTTTGGAAAGGACCCCGCCAAGTT
CAAAGACTTGCAGCTCAAGGAAGTGAAGAACGGCCGCCTTGCCATGATTG
CTGCCGCAGGCATGATTCTTCAAGGTGTCTCCACTCACCAAGGTGCATTG
CAAAACTTGAACGGAAACTAGATGAAGACAGTATTTGCTCTTGCTGCCCT
CCTCCCATGCGCGGCTGGTTTTGTGGCTCCGGTGGCCTTCCCCACAGCCT
CCTCCGCAGGGAAAGCCGTGCGAGGCCGCACTACCATGATGGCGGAACGA
TCCAAGTCCCTTCCCTTCCTGATGAAGCCCAAGAACTTGGACGGGTCCAT
GGCGGGTGACGTTGGCTTCGACCCCTTGGGCCTGTCAGAGATCAACGAAG
TCGGCATCGACCTGTACTGGTTGCGGGAGGCGGAACTCAAGCACTGCCGC
CTCGGGATGATGGCCGCGGCCGGCATTCTCTTCGTGGAGGCTGTGGGACC
CGCCCCCGGTTTCCCCTCCACCAAGAGCCAAATGGATGCGTTCTGGACCG
TGTACGCCGAGAAGCCTTCCCTCGTGGGGGCGGCCTTGGTAGCTATTGCG
ATTTTGGAAGTGATCTCGGGTGTCGCCACCACCCAGGGCCGTCAAAACGG
GGACCGAGCGCCCGGCGACTACAACTTCGACCCCCTGGGCTTTGGAAAGG
ACCCCGCCAAGTTCAAAGACTTGCAG
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Synonyms
Publications