rna7976, rna7976 (mRNA) Nannochloropsis gaditana

Overview
Namerna7976
Unique Namerna7976
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length207
Alignment locationKK037247.1:270133..270781 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102608g1.987.mrna
Orig protein idgnl|cribi|Naga_102608g1.987
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:270133..270781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102608g1gene7723Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22719.1cds7954Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7976rna7976-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7976 ID=rna7976|Name=rna7976|organism=Nannochloropsis gaditana|type=mRNA|length=207bp
ATGGCAGGCCGGTACAAGTATAGCTACATCCTTTTCAACGGCTTTTGCAT
TGGCTCGAGAGATAATCTCGCTTTCAACTGGATTAAGCACATATTTTTGC
AGACGACCTTGAAGCCGCAGGAGGTTGTAGTCTGGCCCGGCCTCTATCAC
TCTTATGCAATCACACTTCCCCCCCCGTTCGAAAGTCTTTCGAACCATCT
TCGATAG
back to top

protein sequence of rna7976

>rna7976-protein ID=rna7976-protein|Name=rna7976|organism=Nannochloropsis gaditana|type=polypeptide|length=146bp
RKGNEKSAKAFSYCFLTHASLGTSLTPFFPSPSFPSFLPPSPFLQPAASV
PDWDGRTLPPEPHDDAAGATRPFPDLARLPSLPPLSRCKGGGGEEGAQGG
VRGANDGGRRRGREGWGGGAGFKFAGDEDVVLCRLLEARGQESFVV
back to top

mRNA from alignment at KK037247.1:270133..270781-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7976 ID=rna7976|Name=rna7976|organism=Nannochloropsis gaditana|type=mRNA|length=649bp|location=Sequence derived from alignment at KK037247.1:270133..270781- (Nannochloropsis gaditana)
AGGAAAGGAAACGAGAAGTCAGCAAAGGCTTTCTCCTATTGCTTCCTAAC
CCACGCCTCGCTCGGAACATCATTGACACCTTTTTTCCCTTCGCCCTCCT
TCCCCTCCTTCCTCCCCCCTTCCCCCTTCCTACAGCCCGCGGCGTCAGTA
CCTGATTGGGATGGACGGACGCTTCCTCCTGAGCCCCATGATGATGCTGC
CGGAGCGACTCGTCCATTTCCTGACCTGGCTCGGCTCCCGTCGTTACCGC
CTCTGTCCCGCTGCAAGGGGGGCGGGGGGGAGGAAGGGGCACAAGGAGGA
GTAAGAGGGGCCAATGACGGAGGTCGAAGGAGGGGAAGAGAGGGATGGGG
AGGAGGCGCGGGATTTAAATTTGCGGGGGATGAAGACGTTGTCTTGTGTC
GCCTTCTCGAAGCACGAGGGCAGGAAAGTTTTGTAGTATAGGGGTATATT
GTCCGGGGTGGGAGGCGGTCAGAAGGCAGGGGTGGGAGGAGGACGGAGGG
GAGGTGACGCGCACTTGCACCCGGTATGAAATGCGAGACAAAAGGAAAAG
AAACGAAGTAAAAGTCGGGAATAAGCACGTTTTGATGATCAAGCCATCGT
CCGCCAGCAAGCTTCCTCCGAACCAGGATTAATGCCCTTCATTGCTTCC
back to top

Coding sequence (CDS) from alignment at KK037247.1:270133..270781-

>rna7976 ID=rna7976|Name=rna7976|organism=Nannochloropsis gaditana|type=CDS|length=441bp|location=Sequence derived from alignment at KK037247.1:270133..270781- (Nannochloropsis gaditana)
AGGAAAGGAAACGAGAAGTCAGCAAAGGCTTTCTCCTATTGCTTCCTAAC
CCACGCCTCGCTCGGAACATCATTGACACCTTTTTTCCCTTCGCCCTCCT
TCCCCTCCTTCCTCCCCCCTTCCCCCTTCCTACAGCCCGCGGCGTCAGTA
CCTGATTGGGATGGACGGACGCTTCCTCCTGAGCCCCATGATGATGCTGC
CGGAGCGACTCGTCCATTTCCTGACCTGGCTCGGCTCCCGTCGTTACCGC
CTCTGTCCCGCTGCAAGGGGGGCGGGGGGGAGGAAGGGGCACAAGGAGGA
GTAAGAGGGGCCAATGACGGAGGTCGAAGGAGGGGAAGAGAGGGATGGGG
AGGAGGCGCGGGATTTAAATTTGCGGGGGATGAAGACGTTGTCTTGTGTC
GCCTTCTCGAAGCACGAGGGCAGGAAAGTTTTGTAGTATAG
back to top
Synonyms
Publications