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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100561g2.10219.mrna |
| Orig protein id | gnl|cribi|Naga_100561g2.10219 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037247.1 | supercontig | KK037247.1:244530..248364 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7966 ID=rna7966|Name=rna7966|organism=Nannochloropsis gaditana|type=mRNA|length=3183bp
TTAAGCCGTTTTACAGGATTACATCCGTTACAGCCGTTATACGTGATTAT
TTCTGTTATTGGCTCTACGGTCTGTACTACGATGTGCTGATCGCCATTGC
GTCATGTCATGGTTTGCGTCCACCTGATCATTTTGTATGTTTTATAATTG
TACGACAACAGGACTGGCGTCGACCACTGTCTTTAATAGTCTTTGGTTTT
ATTGGTTATCTTTGGTATAAGATTCTTGGGTGAATCATTGGTCTATATTC
TCAGGGAGAATAGTGGTTGTACTGAAGAATTAATTGGGTATTGGCTTATC
CACAGCGTTTTGATTTGTCTATTAGCATCAAGCATGTACCCATGGAAGCA
TGTGTTGGTCATTTTCTCTATGGCCCTTCCCTCGTCTGTCATGCTAGGCG
AAGCCCCATATTTCCCGCTTCTTTCGCCTTTGTCTTGTCGCCATTCCCCT
GCAGCCTTATTCTCGTCCTGGATGACTCTGTCGAGGCGCTAGCCGGTGTC
TACGCACTATCATTCCTCTGCGTCATGGCTTTATTTACCATCGGCAACAT
GCTTCTCAAGGTCCTTCAGTGTCCTCTCCCATATTTCTCCTTTTCTCTGT
GTTTCCTCGATCCCTCCTCCAGAACGCAAGTTTTCGAAACAATTGGCTTT
TCTTCCTCCCCTTCGCACCCGATACCCCTTCCGCTTCCCTATAGTTCAAA
CGACCAAATTTTTGTCGTCCCTTTCTTTGCCCTTGGTGGAAGCTCTTCTC
GGGCTTTTTTGTGTAGGAGTCGGGTTCGTCGGGAACATGATGGAAAAAGC
CCGCGTACTTCCGTACTTCGTGGCCTAATATGCTGTGATCGTCACACTGT
GCCTCGTGATGTTCCAACGCGAAAGCTCTTTTGTACGTGCGGGACAATGA
GCAGACCTTCCGGGTTTTGATTGTGCATTTCTCAATGCAGGAGGGAGAGG
AAGGGAGGGAGGAAGGAAAAGGCGAGAGGGATGCAGAGAAAAAAATACAT
GGCGGCCGTGAGAGTGATCGACAAGATCTAACCCAAGATAATGGTGAAGT
GTCTGTATATCCAACGGACTTTCTCCCCCAAAGCCCTGAGTCGACTTTCT
TTCGAGACAGGCATTCCGTCAAACCGATTATTCATGGCCTGTTCTCCAAA
GATTGAGGACTTCCACGAATTTTCTGACGTTCGAATTGTGACGCATTGAT
GGGGTCACAAGAAAAAAAGGACACGCAGGGCTAAGAGCAAATAGCTTCAC
ATGCTTCGATTCAGACTTCGATTGACATATATCGCCATTTTCTAACGGCT
CCTGCGCCCCGGTCCCATAACTTTATTGTTTCGGTTGCTTGCCCGCGGGC
CAGAATATCCTTACGCATTATGCAAGAGCACTTTTTGTTCTGAAAACGAA
GCATATAGTCTCGTTGCGATGGTTTCCTCGTGGAGATTAGTCAGCGAACT
TGGCGCGAGGCAATGCTCGCTTCAGATCTTTTACTTAAAATGTTTCTCTC
GCAATACTCTAGGTTTTGTCATATTCACTGACTGCAGCAGCCATGCCGCT
TTTTGTTTCCTCCCGCTACTTGCTGTCGATCGCAACAGCTGCCCTCTGCT
TGACATCCTCTTTTAGCTTTGCGAAGATTGTAGTTGAAGATAATTTCATC
GACGAGACTACACGCGACGCTCTCCTTGCGCAGCTTCCGTCTGAGATGCA
TCGTTTCAAACACACGGTTGATTTACCTGGCAAGGTGTACAAGCGCCTCC
TTTCCGTGTTGCATCCTGAAAACTCCGAAGTATTTCCTTCCCAGCTCACT
GCACCGGCCAAAGGACAGAAAGGTATGGTCGCCGCTCACAAAGATACATT
CGAGGACAGTTCTCTGGCAGACAGGCAGGTGGGCTTGGTGTACCTGGAAG
GGGATGGCCGCATGCAATTGAAAAACGATGTGACCGGAGAGGAAACGATT
ATCGACGTCAAGCCTGGCCGATTCCTGTCGTGGGATAACCGTCATTATAC
TCACCAGCTTCTTGCGGGTAGCATGCCACGGCGCATTCTTGGTCCGATGG
CTTTCCGTGACGGGGGATTTCAGTCTATTGGAGGAGGTGATCGCAACCGT
TTTATCATCCAGGCCCGCGCCCATCCCCTGTTCGCTCGGGCCGGCAAGAC
GGTGCGTGTGACTGCGGATCTCGTAGTGTTGGATGACCAACCAGGACGTG
AACGTGCTGTGCGGGCACTTCCGACCGCCGACATTGTATTTGCGTGCAGC
CTTGATCCCTTCTTCAATTTCCAGTCCCTTACTGCGGGCAACAAGACCAG
CAAGCATCGCAAGGATGGCACTGACGTCGGGATTTCTTTCTCCCGGTCCA
AAATCGCTCCCAACACGTGGAGGCCTAAGATCACGTATGAGATCGTCGAC
GAAGGCGACACCCTGGTGTGGACTCTCCCCAGCGACGGGACCAGGCTTCT
CAAGAAGTATAAGATTACCATCATCATGCGAATTGGAAAGAACGTTCCTT
CTGGCACCATGATTCCCCTGTACTTGAGCGTGCCCTCTGAATGGGAGCAG
GAGCTGGGCGTGGTGGTCAAGTAAGTGCCTTGGGCTTTCTTACTCTAAGG
GAGGAAAACTATTATGTCATTTGGACAGTGATTTCGAGTGGTAACAAAGA
TAAAGGACAAAAGAAAGAGAATTAAAAAAAGCAGCAAGCAACTCTCGAAA
AGTATGAAGGGAAGAAGATCTAGTAAGAAAGGGAGGGGAACACTTGCGAT
TCGACTGTAAGGGGAAAGCTGTTGCAAACGTGCTTCATGGTCAGGATATC
CGAGAAACGTCCAATACACCTTGCGGTCAAAATCATTCGGAGAGTCAGGA
GACTGCGAAGAGAGAAATCATCGGAGTAGGAAGGTGCTTTGCGTGCCCAT
CTACCCTGGATAGCCTCATGAATACAATGGCGCTGGCGTGTGTATTTATG
ACCAACTTATCACTTATTCAAAGGATCAATCACAAGCTATGAACTAGCCC
TCTCGGCAGTAAGTAAAGGCTGTACTTCGATGTGCGCAATATGCCTCTAT
TCAAGAAAGTCTTTCATGCTATTTCATTTCTCCTCCGACAACTCTTTCAA
GATGAACGCCTTAGCCTTTTCGCCCCTGTGCAACTTGATATTCTTCCCAT
ACTTCTCGCTCCTGACGTTTTCATTCAGGAAGG back to topprotein sequence of rna7966 >rna7966-protein ID=rna7966-protein|Name=rna7966|organism=Nannochloropsis gaditana|type=polypeptide|length=343bp
MPLFVSSRYLLSIATAALCLTSSFSFAKIVVEDNFIDETTRDALLAQLPS
EMHRFKHTVDLPGKVYKRLLSVLHPENSEVFPSQLTAPAKGQKGMVAAHK
DTFEDSSLADRQVGLVYLEGDGRMQLKNDVTGEETIIDVKPGRFLSWDNR
HYTHQLLAGSMPRRILGPMAFRDGGFQSIGGGDRNRFIIQARAHPLFARA
GKTVRVTADLVVLDDQPGRERAVRALPTADIVFACSLDPFFNFQSLTAGN
KTSKHRKDGTDVGISFSRSKIAPNTWRPKITYEIVDEGDTLVWTLPSDGT
RLLKKYKITIIMRIGKNVPSGTMIPLYLSVPSEWEQELGVVVK back to topmRNA from alignment at KK037247.1:244530..248364+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7966 ID=rna7966|Name=rna7966|organism=Nannochloropsis gaditana|type=mRNA|length=3835bp|location=Sequence derived from alignment at KK037247.1:244530..248364+ (Nannochloropsis gaditana)
ATTGcgtcatgtcatggtttgcgtccacctgATCATTTTGTATGTTTTAT
AATtgtacgacaacaggactggcgtcgaccacTGTCTTTAATAGTCTTTG
GTTTTATTGGTTATCTTTGGTATaagattcttgggtgaatcattGGTCTa
tattctcagggagaatagtggTTGTACTGAAGAATTAATTGGGTATTGGC
TTATCCACAGCGTTTTGATTTGTCTATTAGCATCAAGCATGTACCCATGG
AAGCATGTGTTGGTCATTTTCTCTATGGCCCTTCCCTCGTCTGTCATGCT
AGGCGAAGCCCCATATTTCCCGCTTCTTTCGCCTTTGTCTTGTCGCCATT
CCCCTGCAGCCTTATTCTCGTCCTGGATGACTCTGTCGAGGCGCTAGCCG
GTGTCTACGCACTATCATTCCTCTGCGTCATGGCTTTATTTACCATCGGC
AACATGCTTCTCAAGGTCCTTCAGTGTCCTCTCCCAtatttctccttttc
tctgtgtttcctcgatccctcctccagaacGCAAGTTTTCGAAACAATtg
gcttttcttcctccccttcgcacCCGATACCCCTTCCGCTTCCCTATAGT
TCAAACGACCAAATTTTTGTCgtccctttctttgcccttgGTGGAAGCTC
TTCTCGGGCTTTTTTGTGTAGGAGTCGGGTTCGTCGGGAACATGATGGAA
AAAGCCCGCGTACTTCCGTACTTCGTGGCCTAATATGCTGTGATCGTCAC
ACTGGTATGGATGCGAAAAGATTGGATCGACATTTTAGGGACAGAATGAA
AAAAATGCGTTTCCAAATTGCTTTTGACAATAAGTAAGATGAAAGATTGG
TACGGGAATGATCATAGACGATTGTTCGCGCCTCCCGCATTTCCTGTCGT
ATTTACGCTATTCACCTTTTCtatttctctcctcctctttttcagTGCCT
CGTGATGTTCCAACGCGAAAGCTCTTTTGTACGTGCGGGACAATGAGCAG
ACCTTCCGGGTTTTGATTGTGCATTTCTCaatgcaggagggagaggaagg
gagggaggaaggaaaaggcgagaGGGATGCAGAGAAAAAAATACATGGCG
GCCGTGAGAGTGATCGACAAGATCTAACCCAAGATAATGGTAAGTGCATT
GGAATAACGGGATCGAAATTTTGAGAGAAGTAGGTGGAGAGGAGTAGGAG
GAATAAAGCACTCGTATCTGTACCTCAGAAACTACTCATTTCCTACATCG
TCGCTCTACCTTCTCAGGTGAAGTGTCTGTATATCCAACGGACTTTCTCC
CCCAAAGCCCTGAGTCGACTTTCTTTCGAGACAGGCATTCCGTCAAACCG
ATTATTCATGGCCTGTTCTCCAAAGATTGAGGACTTCCACGAATTTTCTG
ACGTTCGAATTGTGACGCATTGATGGGGTcacaagaaaaaaaggacacGC
AGGGCTAAGAGCAAATAGCTTCACATGCTTCGATTCAGACTTCGATTGAC
ATATATCGCCATTTTCTAACGGCTCCTGCGCCCCGGTCCCATAACTTTAT
TGTTTCGGTTGCTTGCCCGCGGGCCAGAATATCCTTACGCATTATGCAAG
AGCACTTTTTGTTCTGAAAACGAAGCATATAGTCTCGTTGCGATGGTTTC
CTCGTGGAGATTAGTCAGCGAACTTGGCGCGAGGCAATGCTCGCTTCAGA
TCTTTTACTTAAAATGTTTCTCTCGCAATACTCTAGGTTTTGTCATATTC
ACTGACTGCAGCAGCCATGCCGCTTTTTGTTTCCTCCCGCTACTTGCTGT
CGATCGCAACAGCTGCCCTCTGCTTGACATCCTCTTTTAGCTTTGCGAAG
ATTGTAGTTGAAGATAATTTCATCGACGAGACTACACGCGACGCTCTCCT
TGCGCAGCTTCCGTCTGAGATGCATCGTTTCAAACACACGGTTGATTTAC
CTGGCAAGGTGTACAAGCGCCTCCTTTCCGTGTTGCATCCTGAAAACTCC
GAAGTATTTCCTTCCCAGCTCACTGCACCGGCCAAAGGACAGAAAGGTAT
GGTCGCCGCTCACAAAGATACATTCGAGGACAGTTCTCTGGCAGACAGGC
AGGTGGGCTTGGTGTACCTGGAAGGGGATGGCCGCATGCAATTGAAAAAC
GATGTGACCGGAGAGGAAACGATTATCGACGTCAAGCCTGGCCGATTCCT
GTCGTGGGATAACCGTCATTATACTCACCAGCTTCTTGCGGGTAGCATGC
CACGGCGCATTCTTGGTCCGATGGCTTTCCGTGACGGGGGATTTCAGTCt
attggaggaggtgatcgCAACCGTTTTATCATCCAGGCCCGCGCCCATCC
CCTGTTCGCTCGGGCCGGCAAGACGGTGCGTGTGACTGCGGATCTCGTAG
TGTTGGATGACCAACCAGGACGTGAACGTGCTGTGCGGGCACTTCCGACC
GCCGACATTGTATTTGCGGTAAGTGACCAAAATCTAAGAATtgaggaaag
agagcgaaTAGCATCGGTGAAAGTCCTTGAATAAGTTTTCAACTCTAATT
CCTTGTAGCATTTCCATGATTTGATGAGCCACACGGATATATTCATGGAT
GTGACGCAATCATGTGGCAATACTGATGATTTCGCTTCCATGTCGCGGAC
ATGTTCCTTTCTACTCTtgcttcccccttttctttcagtGCAGCCTTGAT
CCCTTCTTCAATTTCCAGTCCCTTACTGCGGGCAACAAGACCAGCAAGCA
TCGCAAGGATGGCACTGACGTCGGGATTTCTTTCTCCCGGTCCAAAATCG
CTCCCAACACGTGGAGGCCTAAGTAAGTCAAATCTCCATCCATTCATTGC
TTTTTCTCTGCCTTCCTATAATGCTGACAGGGAGAAAGCGTTATTGTTTA
CCTTGATCGTTCCTCACTCCTCATCCGTCAAGTCTTTTTGTGTAGTGTGG
AAACGCTTGCTTGTTTCACGTCACGCTTTGCTCGATCGGCAAGCTGATTG
TtctcccatcttcctttATTGCCCCGTAAGGATCACGTATGAGATCGTCG
ACGAAGGCGACACCCTGGTGTGGACTCTCCCCAGCGACGGGACCAGGCTT
CTCAAGAAGTATAAGATTACCATCATCATGCGAATTGGAAAGAACGTTCC
TTCTGGCACCATGATTCCCCTGTACTTGAGCGTGCCCTCTGAatgggagc
aggagctgggCGTGGTGGTCAAGTAAGTGCCTTGGGCTTTCTTACTCTAA
GGGAGGAAAACTATTATGTCATTTGGACAGTGATTTCGAGTGGTAACAAA
GATAAAGGACAAAAGAAAGAGAATTAAAAAAAGCAGCAAGCAACTCTCGA
AAAGTATGAAGGGAAGAAGATCTAgtaagaaagggaggggaacacTTGCG
ATTCGACTGTAAGGGGAAAGCTGTTGCAAACGTGCTTCATGGTCAGGATA
TCCGAGAAACGTCCAATACACCTTGCGGTCAAAATCATTCGGAGAGTCAG
GAGACTGCGAAGAGAGAAATCATCGGAGTAGGAAGGTGCTTTGCGTGCCC
ATCTACCCTGGATAGCCTCATGAATACAATGGCGCTGGCGTGTGTATTTA
TGACCAACTTATCACTTATTCAAAGGATCAATCACAAGCTATGAACTAGC
CCTCTCGGCAGTAAGTAAAGGCTGTACTTCGATGTGCGCAATATGCCTCT
ATTCAAGAAAGTCTTTCATGCTATTTCATTTCTCCTCCGACAACTCTTTC
AAGATGAACGCCTTAGCCTTTTCGCCCCTGTGCAACTTGATATTCTTCCC
ATACTTCTCGCTCCTGACGTTTTCATTCAGGAagg back to topCoding sequence (CDS) from alignment at KK037247.1:244530..248364+ >rna7966 ID=rna7966|Name=rna7966|organism=Nannochloropsis gaditana|type=CDS|length=3096bp|location=Sequence derived from alignment at KK037247.1:244530..248364+ (Nannochloropsis gaditana)
ATGCCGCTTTTTGTTTCCTCCCGCTACTTGCTGTCGATCGCAACAGCTGC
CCTCTGCTTGACATCCTCTTTTAGCTTTGCGAAGATTGTAGTTGAAGATA
ATTTCATCGACGAGACTACACGCGACGCTCTCCTTGCGCAGCTTCCGTCT
GAGATGCATCGTTTCAAACACACGGTTGATTTACCTGGCAAGGTGTACAA
GCGCCTCCTTTCCGTGTTGCATCCTGAAAACTCCGAAGTATTTCCTTCCC
AGCTCACTGCACCGGCCAAAGGACAGAAAGGTATGGTCGCCGCTCACAAA
GATACATTCGAGGACAGTTCTCTGGCAGACAGGCAGGTGGGCTTGGTGTA
CCTGGAAGGGGATGGCCGCATGCAATTGAAAAACGATGTGACCGGAGAGG
AAACGATTATCGACGTCAAGCCTGGCCGATTCCTGTCGTGGGATAACCGT
CATTATACTCACCAGCTTCTTGCGGGTAGCATGCCACGGCGCATTCTTGG
TCCGATGGCTTTCCGTGACGGGGGATTTCAGTCtattggaggaggtgatc
gCAACCGTTTTATCATCCAGGCCCGCGCCCATCCCCTGTTCGCTCGGGCC
GGCAAGACGGTGCGTGTGACTGCGGATCTCGTAGTGTTGGATGACCAACC
AGGACGTGAACGTGCTGTGCGGGCACTTCCGACCGCCGACATTGTATTTG
CGtGCAGCCTTGATCCCTTCTTCAATTTCCAGTCCCTTACTGCGGGCAAC
AAGACCAGCAAGCATCGCAAGGATGGCACTGACGTCGGGATTTCTTTCTC
CCGGTCCAAAATCGCTCCCAACACGTGGAGGCCTAAGATCACGTATGAGA
TCGTCGACGAAGGCGACACCCTGGTGTGGACTCTCCCCAGCGACGGGACC
AGGCTTCTCAAGAAGTATAAGATTACCATCATCATGCGAATTGGAAAGAA
CGTTCCTTCTGGCACCATGATTCCCCTGTACTTGAGCGTGCCCTCTGAat
gggagcaggagctgggCGTGGTGGTCAAGTAAATGCCGCTTTTTGTTTCC
TCCCGCTACTTGCTGTCGATCGCAACAGCTGCCCTCTGCTTGACATCCTC
TTTTAGCTTTGCGAAGATTGTAGTTGAAGATAATTTCATCGACGAGACTA
CACGCGACGCTCTCCTTGCGCAGCTTCCGTCTGAGATGCATCGTTTCAAA
CACACGGTTGATTTACCTGGCAAGGTGTACAAGCGCCTCCTTTCCGTGTT
GCATCCTGAAAACTCCGAAGTATTTCCTTCCCAGCTCACTGCACCGGCCA
AAGGACAGAAAGGTATGGTCGCCGCTCACAAAGATACATTCGAGGACAGT
TCTCTGGCAGACAGGCAGGTGGGCTTGGTGTACCTGGAAGGGGATGGCCG
CATGCAATTGAAAAACGATGTGACCGGAGAGGAAACGATTATCGACGTCA
AGCCTGGCCGATTCCTGTCGTGGGATAACCGTCATTATACTCACCAGCTT
CTTGCGGGTAGCATGCCACGGCGCATTCTTGGTCCGATGGCTTTCCGTGA
CGGGGGATTTCAGTCtattggaggaggtgatcgCAACCGTTTTATCATCC
AGGCCCGCGCCCATCCCCTGTTCGCTCGGGCCGGCAAGACGGTGCGTGTG
ACTGCGGATCTCGTAGTGTTGGATGACCAACCAGGACGTGAACGTGCTGT
GCGGGCACTTCCGACCGCCGACATTGTATTTGCGtGCAGCCTTGATCCCT
TCTTCAATTTCCAGTCCCTTACTGCGGGCAACAAGACCAGCAAGCATCGC
AAGGATGGCACTGACGTCGGGATTTCTTTCTCCCGGTCCAAAATCGCTCC
CAACACGTGGAGGCCTAAGATCACGTATGAGATCGTCGACGAAGGCGACA
CCCTGGTGTGGACTCTCCCCAGCGACGGGACCAGGCTTCTCAAGAAGTAT
AAGATTACCATCATCATGCGAATTGGAAAGAACGTTCCTTCTGGCACCAT
GATTCCCCTGTACTTGAGCGTGCCCTCTGAatgggagcaggagctgggCG
TGGTGGTCAAGTAAATGCCGCTTTTTGTTTCCTCCCGCTACTTGCTGTCG
ATCGCAACAGCTGCCCTCTGCTTGACATCCTCTTTTAGCTTTGCGAAGAT
TGTAGTTGAAGATAATTTCATCGACGAGACTACACGCGACGCTCTCCTTG
CGCAGCTTCCGTCTGAGATGCATCGTTTCAAACACACGGTTGATTTACCT
GGCAAGGTGTACAAGCGCCTCCTTTCCGTGTTGCATCCTGAAAACTCCGA
AGTATTTCCTTCCCAGCTCACTGCACCGGCCAAAGGACAGAAAGGTATGG
TCGCCGCTCACAAAGATACATTCGAGGACAGTTCTCTGGCAGACAGGCAG
GTGGGCTTGGTGTACCTGGAAGGGGATGGCCGCATGCAATTGAAAAACGA
TGTGACCGGAGAGGAAACGATTATCGACGTCAAGCCTGGCCGATTCCTGT
CGTGGGATAACCGTCATTATACTCACCAGCTTCTTGCGGGTAGCATGCCA
CGGCGCATTCTTGGTCCGATGGCTTTCCGTGACGGGGGATTTCAGTCtat
tggaggaggtgatcgCAACCGTTTTATCATCCAGGCCCGCGCCCATCCCC
TGTTCGCTCGGGCCGGCAAGACGGTGCGTGTGACTGCGGATCTCGTAGTG
TTGGATGACCAACCAGGACGTGAACGTGCTGTGCGGGCACTTCCGACCGC
CGACATTGTATTTGCGtGCAGCCTTGATCCCTTCTTCAATTTCCAGTCCC
TTACTGCGGGCAACAAGACCAGCAAGCATCGCAAGGATGGCACTGACGTC
GGGATTTCTTTCTCCCGGTCCAAAATCGCTCCCAACACGTGGAGGCCTAA
GATCACGTATGAGATCGTCGACGAAGGCGACACCCTGGTGTGGACTCTCC
CCAGCGACGGGACCAGGCTTCTCAAGAAGTATAAGATTACCATCATCATG
CGAATTGGAAAGAACGTTCCTTCTGGCACCATGATTCCCCTGTACTTGAG
CGTGCCCTCTGAatgggagcaggagctgggCGTGGTGGTCAAGTAA back to top
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