rna7960, rna7960 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7960
Unique Name	rna7960
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1664
Alignment location	KK037247.1:226896..228633 +

Link to JBrowse

Properties


Property Name	Value
Product	rna methylase
Orig transcript id	gnl\|cribi\|Naga_100209g5.4958.mrna
Orig protein id	gnl\|cribi\|Naga_100209g5.4958
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:226896..228633 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100209g5	gene7709	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7960	rna7960-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22732.1	cds7938	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:226896..228633+
coding sequence from alignment at KK037247.1:226896..228633+

mRNA sequence

>rna7960 ID=rna7960|Name=rna7960|organism=Nannochloropsis gaditana|type=mRNA|length=1664bp
CCATGCTAGAGACTCTACGTGCACTTGAATCGGCTTCAGCATAATTGAAA
CAATTTCCTGACCCTGAAGTGGGCTGAAGCGGACACAAGTTGGGTGGATG
GATTCGTCATTCTCAGTTGATTTTTCTTCAGCGATGACATGATATCGTGT
ACAGCCACAAAGGACCAGGCACGTTTATGAGCTCTTCAAGCATACAACTT
CAATGAAAGCAGAGTACGCTGGAGAATCTGAACTTATTTTGTCGCCAGGA
CAGCCACTGGTCTTGGACGGAGGTCCCTGTCGACCGACCTGCCCCCCGCC
CATGCCCACATTGACCAAAGATGTCGAGCTTGAAATCGACGAAGATGAAG
ATGAATACCCTGTCCTTCCGGGACAGGTCTGGATGGAAGGGGACTCCCTT
GCTCCCCCTTGCCAATCGGATTTGGACATAGTTGATGATATTTGTGGCTT
GGGCTGCATAGACGCAGACGATGTTTTCTTCGATCTCGGTTGTGGGGATG
GTCGTATATGTATTGCAGTAGCACAGGTCACCGGGGCAAGGGCGAGAGGA
GTCGAAATCGAGGAGAGACTGGTCAAAAGATTCCGGACGCGCATAGCCCG
CGCTGAGAAGGCAAGGTCGGCAGTAGATTTCGCTGAAGACGCCGCATCTG
GGCCGCACAACAATGATGATACTCCGATGAAAATGGCAACAGGAAAAAAA
GAAGCTGTACAGCAAGCGAGCGAGTCATTTAAAGGTACAAGACGTGATGG
TATATCAGAGGGGACCCGAGGCGAGCGACTCCTTTTCGATCAATCGCAGC
ATGTAGAGGGACAGGAGCGGCAGTTGAAGCAATTGCAGCATCATCTACAC
CCCCAAAAGGTCCTAGAAGAAGGCCGGGTAAAGGTAATTTGGCAGGATTT
GCTGACAGTAGACCTTTTTCAAGCGTCGGTTATCTATTTGTACCTTCTTC
CAGAGGGCATCCAGGCATTGAGGTCTCAAATAGAGGCTTGGTTGGACGGG
CATGGAGAAGGGGTAGATGGAAATGCGTGTTGTACAGAAACTCTTAAAAA
AAAACGTAACGTGTGCATTACTCGGGGCCACGACAATGAGTATGCCCGGG
GCAAGAATGAAGTCTCCTCTAAGGATGAAGGTGAAGATCAGACTGTGATC
GCTGTCGTAAGCAATGACTGGAGCGCTGAGGGTACGACTTGCGAGGATGA
CAACGCGGAGATGTTGTGTGCCCCTAAGAAGCGACGAAGACGCCGACGAT
TGATCTGCAATACCTGGGGTCTCCCCGGACGTGCGCCAGCTGCGGTCAGA
GATGTGGGGGCTATGGCGAACGTTAGACTCTTGTTGTATGAGTCTCCACT
TCAAAGCGAGGAATGAGGCGCTAAGTGGGACAATCTTGATGTGTTACGAT
CGAGACCACCAGAGCAAGTCGGTTACAGAGTACTGTCTGTCTATGAAAGT
ATGTAAATATTCTAAAACCAAAACCAGTTGATAGTAAAAGAAAAGCAGAT
GTCGAGGCAGTCACCATGTCGAAAGGTCGGCAATCGCTTGAGTGATAGTA
AGACATTGCACGCACGTTTAAAATGACAGTTTTGACGCTAATGTTTGAAA
CGGGCTTGATGTAGAGAACTCACATTGAAACGCTTAAAGAAAAAATCATC
ACCCGAAGCAACTT

protein sequence of rna7960

>rna7960-protein ID=rna7960-protein|Name=rna7960|organism=Nannochloropsis gaditana|type=polypeptide|length=386bp
MKEYAGESELILSPGQPLVLDGGPCRPTCPPPMPTLTKDVELEIDEDEDE
YPVLPGQVWMEGDSLAPPCQSDLDIVDDICGLGCIDADDVFFDLGCGDGR
ICIAVAQVTGARARGVEIEERLVKRFRTRIARAEKARSAVDFAEDAASGP
HNNDDTPMKMATGKKEAVQQASESFKGTRRDGISEGTRGERLLFDQSQHV
EGQERQLKQLQHHLHPQKVLEEGRVKVIWQDLLTVDLFQASVIYLYLLPE
GIQALRSQIEAWLDGHGEGVDGNACCTETLKKKRNVCITRGHDNEYARGK
NEVSSKDEGEDQTVIAVVSNDWSAEGTTCEDDNAEMLCAPKKRRRRRRLI
CNTWGLPGRAPAAVRDVGAMANVRLLLYESPLQSEE

mRNA from alignment at KK037247.1:226896..228633+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7960 ID=rna7960|Name=rna7960|organism=Nannochloropsis gaditana|type=mRNA|length=1738bp|location=Sequence derived from alignment at KK037247.1:226896..228633+ (Nannochloropsis gaditana)
CCATGCTAGAGACTCTACGTGCACTTGAATCGGCTTCAGCATAATTGAAA
CAATTTCCTGACCCTGAAGTGGGCTGAAGCGGACACAAGTTGGGTGGATG
GATTCGTCATTCTCAGTTGATTTTTCTTCAGCGATGACATGATATCGTGT
ACAGCCACAAAGGACCAGGCACGTTTATGAGCTCTTCAAGCATACAACTT
CAATGAAAGGTAACTTTTTACCACTCCTATATACATGCCTGGTTCCAATA
TCATTCCATTGATCTTATTATGTAACGTCACAGCAGAGTACGCTGGAGAA
TCTGAACTTATTTTGTCGCCAGGACAGCCACTGGTCTTGGACGGAGGTCC
CTGTCGACCgacctgccccccgcccatgCCCACATTGACCAAAGATGTCG
AGCTTGAAATCGacgaagatgaagatgaatACCCTGTCCTTCCGGGACAG
GTCTGGATGGAAGGGGactcccttgctcccccttGCCAATCGGATTTGGA
CATAGTTGATGATATTTGTGGCTTGGGCTGCATAGACGCAGACGATGTTT
TCTTCGATCTCGGTTGTGGGGATGGTCGTATATGTATTGCAGTAGCACAG
GTCACCGGGGCAAGGGCGAGAGGAGTCGAAATCGAGGAGAGACTGGTCAA
AAGATTCCGGACGCGCATAGCCCGCGCTGAGAAGGCAAGGTCGGCAGTAG
ATTTCGCTGAAGACGCCGCATCTGGGCCGCACAACAATGATGATACTCCG
ATGAAAATGGcaacaggaaaaaaagaagctgTACAGCAAGCGAGCGAGTC
ATTTAAAGGTACAAGACGTGATGGTATATCAGAGGGGACCCGAGGCGAGC
GACTCCTTTTCGATCAATCGCAGCATGTAGAGGGACAGGAGCGGCAGTTG
AAGCAATTGCAGCATCATCTACACCCCCAAAAGGTCCTAGAAGAAGGCCG
GGTAAAGGTAATTTGGCAGGATTTGCTGACAGTAGACCTTTTTCAAGCGT
CGGTTATCTATTTGTACCTTCTTCCAGAGGGCATCCAGGCATTGAGGTCT
CAAATAGAGGCTTGGTTGGACgggcatggagaaggggTAGATGGAAATGC
GTGTTGTACAGAAACTCTTAAAAAAAAACGTAACGTGTGCATTACTCGGG
GCCACGACAATGAGTATGCCCGGGGCAAGAATGAAGTCTCCTCTAAGGAT
GAAGGTGAAGATCAGACTGTGATCGCTGTCGTAAGCAATGACTGGAGCGC
TGAGGGTACGACTTGCGAGGATGACAACGCGGAGATGTTGTGTGCCCCTA
AGAAGCGACGAAGACGCCGACGATTGATCTGCAATACCTGGGGTCTCCCC
GGACGTGCGCCAGCTGCGGTCAGAGATGTGGGGGCTATGGCGAACGTTAG
ACTCTTGTTGTATGAGTCTCCACTTCAAAGCGAGGAATGAGGCGCTAAGT
GGGACAATCTTGATGTGTTACGATCGAGACCACCAGAGCAAGTCGGTTAC
AGAGTACTGTCTGTCTATGAAAGTATGTAAATATTCTAAAACCAAAACCA
GTTGATAGTAAAAGAAAAGCAGATGTCGAGGCAGTCACCATGTCGAAAGG
TCGGCAATCGCTTGAGTGATAGTAAGACATTGCACGCACGTTTAAAATGA
CAGTTTTGACGCTAATGTTTGAAACGGGCTTGATGTAGAGAACTCACATT
GAAACGCTTAAAGAAAAAATCATCACCCGAAGCAACTT

Coding sequence (CDS) from alignment at KK037247.1:226896..228633+

>rna7960 ID=rna7960|Name=rna7960|organism=Nannochloropsis gaditana|type=CDS|length=2322bp|location=Sequence derived from alignment at KK037247.1:226896..228633+ (Nannochloropsis gaditana)
ATGAAAGAGTACGCTGGAGAATCTGAACTTATTTTGTCGCCAGGACAGCC
ACTGGTCTTGGACGGAGGTCCCTGTCGACCgacctgccccccgcccatgC
CCACATTGACCAAAGATGTCGAGCTTGAAATCGacgaagatgaagatgaa
tACCCTGTCCTTCCGGGACAGGTCTGGATGGAAGGGGactcccttgctcc
cccttGCCAATCGGATTTGGACATAGTTGATGATATTTGTGGCTTGGGCT
GCATAGACGCAGACGATGTTTTCTTCGATCTCGGTTGTGGGGATGGTCGT
ATATGTATTGCAGTAGCACAGGTCACCGGGGCAAGGGCGAGAGGAGTCGA
AATCGAGGAGAGACTGGTCAAAAGATTCCGGACGCGCATAGCCCGCGCTG
AGAAGGCAAGGTCGGCAGTAGATTTCGCTGAAGACGCCGCATCTGGGCCG
CACAACAATGATGATACTCCGATGAAAATGGcaacaggaaaaaaagaagc
tgTACAGCAAGCGAGCGAGTCATTTAAAGGTACAAGACGTGATGGTATAT
CAGAGGGGACCCGAGGCGAGCGACTCCTTTTCGATCAATCGCAGCATGTA
GAGGGACAGGAGCGGCAGTTGAAGCAATTGCAGCATCATCTACACCCCCA
AAAGGTCCTAGAAGAAGGCCGGGTAAAGGTAATTTGGCAGGATTTGCTGA
CAGTAGACCTTTTTCAAGCGTCGGTTATCTATTTGTACCTTCTTCCAGAG
GGCATCCAGGCATTGAGGTCTCAAATAGAGGCTTGGTTGGACgggcatgg
agaaggggTAGATGGAAATGCGTGTTGTACAGAAACTCTTAAAAAAAAAC
GTAACGTGTGCATTACTCGGGGCCACGACAATGAGTATGCCCGGGGCAAG
AATGAAGTCTCCTCTAAGGATGAAGGTGAAGATCAGACTGTGATCGCTGT
CGTAAGCAATGACTGGAGCGCTGAGGGTACGACTTGCGAGGATGACAACG
CGGAGATGTTGTGTGCCCCTAAGAAGCGACGAAGACGCCGACGATTGATC
TGCAATACCTGGGGTCTCCCCGGACGTGCGCCAGCTGCGGTCAGAGATGT
GGGGGCTATGGCGAACGTTAGACTCTTGTTGTATGAGTCTCCACTTCAAA
GCGAGGAATGAATGAAAGAGTACGCTGGAGAATCTGAACTTATTTTGTCG
CCAGGACAGCCACTGGTCTTGGACGGAGGTCCCTGTCGACCgacctgccc
cccgcccatgCCCACATTGACCAAAGATGTCGAGCTTGAAATCGacgaag
atgaagatgaatACCCTGTCCTTCCGGGACAGGTCTGGATGGAAGGGGac
tcccttgctcccccttGCCAATCGGATTTGGACATAGTTGATGATATTTG
TGGCTTGGGCTGCATAGACGCAGACGATGTTTTCTTCGATCTCGGTTGTG
GGGATGGTCGTATATGTATTGCAGTAGCACAGGTCACCGGGGCAAGGGCG
AGAGGAGTCGAAATCGAGGAGAGACTGGTCAAAAGATTCCGGACGCGCAT
AGCCCGCGCTGAGAAGGCAAGGTCGGCAGTAGATTTCGCTGAAGACGCCG
CATCTGGGCCGCACAACAATGATGATACTCCGATGAAAATGGcaacagga
aaaaaagaagctgTACAGCAAGCGAGCGAGTCATTTAAAGGTACAAGACG
TGATGGTATATCAGAGGGGACCCGAGGCGAGCGACTCCTTTTCGATCAAT
CGCAGCATGTAGAGGGACAGGAGCGGCAGTTGAAGCAATTGCAGCATCAT
CTACACCCCCAAAAGGTCCTAGAAGAAGGCCGGGTAAAGGTAATTTGGCA
GGATTTGCTGACAGTAGACCTTTTTCAAGCGTCGGTTATCTATTTGTACC
TTCTTCCAGAGGGCATCCAGGCATTGAGGTCTCAAATAGAGGCTTGGTTG
GACgggcatggagaaggggTAGATGGAAATGCGTGTTGTACAGAAACTCT
TAAAAAAAAACGTAACGTGTGCATTACTCGGGGCCACGACAATGAGTATG
CCCGGGGCAAGAATGAAGTCTCCTCTAAGGATGAAGGTGAAGATCAGACT
GTGATCGCTGTCGTAAGCAATGACTGGAGCGCTGAGGGTACGACTTGCGA
GGATGACAACGCGGAGATGTTGTGTGCCCCTAAGAAGCGACGAAGACGCC
GACGATTGATCTGCAATACCTGGGGTCTCCCCGGACGTGCGCCAGCTGCG
GTCAGAGATGTGGGGGCTATGGCGAACGTTAGACTCTTGTTGTATGAGTC
TCCACTTCAAAGCGAGGAATGA

Synonyms

Publications