rna7939, rna7939 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7939
Unique Name	rna7939
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1062
Alignment location	KK037247.1:160808..162749 +

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Properties


Property Name	Value
Product	ncs1 nucleoside transporter family
Orig transcript id	gnl\|cribi\|Naga_100516g4.10607.mrna
Orig protein id	gnl\|cribi\|Naga_100516g4.10607
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:160808..162749 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100516g4	gene7689	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7939	rna7939-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22759.1	cds7917	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:160808..162749+
coding sequence from alignment at KK037247.1:160808..162749+

mRNA sequence

>rna7939 ID=rna7939|Name=rna7939|organism=Nannochloropsis gaditana|type=mRNA|length=1062bp
TCGTTGTATGACAAGCTGTCCGACGGGAGCCTTCCTTTCATCTCCATTAC
GATCGCGCAGAGAAGTTGGCGATGCGCCCATGTCATGCCCTCATGATACC
AGAATTACCCTCCGATGAGTTGCTCTGTAGAAAATGAATATAAAATGCAA
GTCTATACCACCTTTGCTCATGTTATAGGTTACTGGAACGTTTATCGATC
CCTCGCGATTTTCGTCGAGGGCGTCTAGAGCTCTGTTTGGGTACCTCGCT
GCTGTCTGTTGATCAAAGACATTCTTGCAAGACTACTACTCCACTCCAAA
AAGGACAAGCCTCCGCAAACTATGTCAGACCCCTTTGTCCCCTCAGTTAC
TGCCATATTCGTGCTTGACAATGATGGTCAGCGGCTATCAGCGAAGTATT
TCAACCCGATATTCGCCACCAACGCAGAAAAGATGGCATTTGAGATGCGT
GTTTTCAAAAAAACCCGGCACAACAACGCCCGCTCCGAATCCGAGATCAT
AACAATAGACAACTTCACCGTCGTTTTTCGGTCCGGCACTGATGCGCACT
TTTATGTGGTGGGAGATGCGAAGGAGAACGAGCTAATCTTGGCCACTGTG
CTGGACGCGTTTCGCGACGCCATTGCCATGCTCCTGCGGGGCCAAGTGGA
CCGTCGCTCGCTTTTGGATAATCTGGACCTGCTCATGCTCACAGTGGATG
AGTTGGTGGACGGTGGAATCATCTTGGAAACGGATTCTTCCGCTATTGTC
GCGCGTGTTTTGATGCGGGGCGTATCCGGAGGTCAAAATGTCCCCTTGGC
GGACATGACCATCTCACAAGCATTCGCGTCTGCGAAAGACTCCTTCATCA
AAAGCATGGGGAATCGCGAAGGAAACTTTTAAGGCCGTGATGGCAGACGG
GAAGCGATATAAAAAGCAAACGATGGCAACACCCGACTCATGCTGTGGAC
GGGGTTAGGAGAAGGGGGGGGGAATGGTGCGCAAAATGGAACGAAGAGCT
CTTAAAATCGAAAGCAAGCAAGAAGTCGAAACAAGACTTTGCCATAATGT
TGTAGTCAAATG

protein sequence of rna7939

>rna7939-protein ID=rna7939-protein|Name=rna7939|organism=Nannochloropsis gaditana|type=polypeptide|length=524bp
MGTDLARPRSFKGRQRPVDDDWDDVDLHCVGNAHRGSRQYPSRSAQTRGR
ASQGQQVEGERASYRRRWSHPAPTTEVVLAPASSLDPVGLQEKSWRFNDY
FWLASSLALSPPAYMLGVLGSHLGLTWKWSVLASFLSALLAAGLAALTMH
APSKYGIPFCVSARTSFGIFGAKFFSLLHLGLAFPWTAWLLSIATEGLRE
GITRFRPSVATWNPLPPSFLPPGQSSLLSLLCLASSFLLLVSLHAFGKIQ
ALRSLAPVLSTLLLAFYVGLGIWAYRLLGLDTGLHAYDAKVLPASLPPSP
PFPLYTSLPLAVLLGLGAWTTPLLLGWGDLSRWCSLRPSPRHALLVVFPL
LSPLTTFLGCFLTGTVARGWSTVVFTPTALLSFLSPPYMALLGGIGLWVA
TLHTAVVGYLLPGAHALSNVLGPRLLANTGVAGGCLGFGAFLFVLLAPST
VLTSRDAHGGSAFVGGSLLSGLVGGALVGVLLSDIFWEWRCLDSLPCGGR
PSPPAQGDTEQEQGPRARSPPLNF

mRNA from alignment at KK037247.1:160808..162749+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7939 ID=rna7939|Name=rna7939|organism=Nannochloropsis gaditana|type=mRNA|length=1942bp|location=Sequence derived from alignment at KK037247.1:160808..162749+ (Nannochloropsis gaditana)
ATGGGGACGGACCTAGCGCGGCCGCGATCCTTCAAAGGTAAAAATAGCCT
TTTTAAAAGAATATTTCTGCTTTTATTCGTGTACGCTGCGGCCCGCTTTT
AACgttcttccccgccccccttaaaatctcttcccccccggtcAGGTCGC
CAGAGGCCCGTGGACGACGACTGGGATGACGTAGACTTGCATTGCGTAGG
TAACGCGCACAGGGGCAGTCGACAGTACCCATCCCGAAGTGCCCAGACAC
GTGGAAGGGCCTCCCAAGGACagcaagtggagggggaaagggcctcGTAC
AGAAGAAGATGGTCGCATCCAGCCCCGACGACGGAAGTAGTGCTGGCTCC
TGCGTCGTCCCTGGACCCTGTGGGTTTGCAGGAGAAGAGTTGGCGATTCA
ACGATGTAAGTACAGTAATTAGGGTAAAACCatccggggggagggatgcc
ATGCCGAGGATGGGAATATGTCCTTCCGACGCCCCGCTGGCGCATTCCCG
ACACATCCCTCACCATGCTCTGCCCCTTCGCACCCACGACGTCGCCATCC
TATCCGCACGACAGTACTTCtggctcgcctcctccctcgccctctcccct
ccagCCTACATGCTGGGGGTCCTGGGGTCCCACCTGGGCCTCACCTGGAA
ATGGTCCGTCctggcttccttcctctctgccctccttgccgccgGCCTTG
CCGCCTTGACCATGCACGCCCCCAGCAAGTACGGCATCCCTTTCTGTGTT
TCTGCCCGGACCAGCTTTGGaatttttggcgcgaaatttttctccctcct
ccacctagGCCTGGCTTTCCCATGGACGGCGTGGCTCCTCAGCATTGCGA
CCGAGGGCCTCCGAGAGGGAATCACgcgcttccgtccctccgtcGCCACG
TGGaacccgctccctccttccttcctgccccccggCCAATCCTCTCTCCT
CAGCCTTCTCTGCCTGGCCAgtagcttcctcctcctcgtctccttgcACG
CGTTTGGGAAAATCCAGGCGCTTCGTTCGCTCGCGCCCGTCCTcagcacc
ctcctccttgccttctaCGTGGGTCTGGGAATATGGGCCtaccgcctcct
tggcctcgaCACCGGGCTCCACGCCTACGACGCAAaggtcctccctgcct
ccctccctccctcccctcccttccctctctacacctccctgcccctcgcc
gtcctcctcggttTGGGCGCGTGGAcgacccccctcctccttggctggGG
CGACTTGAGTCGATGGTGTAGTCTGCGCCCGTCTCCGCGCCATGCCCTCC
TGGtggttttccccctcctctcccctctcacCACCTTTCTGGGCTGCTTC
CTCACGGGCACCGTCGCGCGCGGTTGGAGCACGGTGGTCTTCacgcccac
cgccctcctttctttcctttccccgccctacATGGCCTTGCTGGGAGGGA
TCGGACTCTGGGTTGCCACGCTTCACACGGCCGTTGTCGGCTATCTCCTC
CCGGGGGCTCACGCCCTGAGCAACGTCTTGGGACCTCGGCTTCTTGCCAA
TACGGGCGTGGCAGGCGGGTGCTTGGGTTTTggtgccttcctcttcgtcc
tcctcgcgccTTCCACCGTGTTGACAAGCCGAGACGCCCACGGTGGCTCG
GCCTTTGTCGGGGGGTCCCTGCTCTCGGGCCTTGTCGGCGGGGCCCTGGT
CGGGGTTTTGCTCTCGGACATTTTTTGGGTACGccaagccgtcctccccg
tccattATCTGTACAAAACGGCGCCGCGGTTGCACAAGGGGGGGGTAAAC
ATGGGAGCGATTCTGGCCGTGCTGGCAGGAGTGGCGGTGTTTGGATTCCC
TTCCGTGTGGCGGAcgaccctccccgccagcacAGGGGGATacggagcag
gagcagggtCCCAGAGCACGATCGCCGCCACTGAACTTCTAG

Coding sequence (CDS) from alignment at KK037247.1:160808..162749+

>rna7939 ID=rna7939|Name=rna7939|organism=Nannochloropsis gaditana|type=CDS|length=6300bp|location=Sequence derived from alignment at KK037247.1:160808..162749+ (Nannochloropsis gaditana)
ATGGGGACGGACCTAGCGCGGCCGCGATCCTTCAAAGGTCGCCAGAGGCC
CGTGGACGACGACTGGGATGACGTAGACTTGCATTGCGTAGGTAACGCGC
ACAGGGGCAGTCGACAGTACCCATCCCGAAGTGCCCAGACACGTGGAAGG
GCCTCCCAAGGACagcaagtggagggggaaagggcctcGTACAGAAGAAG
ATGGTCGCATCCAGCCCCGACGACGGAAGTAGTGCTGGCTCCTGCGTCGT
CCCTGGACCCTGTGGGTTTGCAGGAGAAGAGTTGGCGATTCAACGATTAC
TTCtggctcgcctcctccctcgccctctcccctccagCCTACATGCTGGG
GGTCCTGGGGTCCCACCTGGGCCTCACCTGGAAATGGTCCGTCctggctt
ccttcctctctgccctccttgccgccgGCCTTGCCGCCTTGACCATGCAC
GCCCCCAGCAAGTACGGCATCCCTTTCTGTGTTTCTGCCCGGACCAGCTT
TGGaatttttggcgcgaaatttttctccctcctccacctagGCCTGGCTT
TCCCATGGACGGCGTGGCTCCTCAGCATTGCGACCGAGGGCCTCCGAGAG
GGAATCACgcgcttccgtccctccgtcGCCACGTGGaacccgctccctcc
ttccttcctgccccccggCCAATCCTCTCTCCTCAGCCTTCTCTGCCTGG
CCAgtagcttcctcctcctcgtctccttgcACGCGTTTGGGAAAATCCAG
GCGCTTCGTTCGCTCGCGCCCGTCCTcagcaccctcctccttgccttcta
CGTGGGTCTGGGAATATGGGCCtaccgcctccttggcctcgaCACCGGGC
TCCACGCCTACGACGCAAaggtcctccctgcctccctccctccctcccct
cccttccctctctacacctccctgcccctcgccgtcctcctcggttTGGG
CGCGTGGAcgacccccctcctccttggctggGGCGACTTGAGTCGATGGT
GTAGTCTGCGCCCGTCTCCGCGCCATGCCCTCCTGGtggttttccccctc
ctctcccctctcacCACCTTTCTGGGCTGCTTCCTCACGGGCACCGTCGC
GCGCGGTTGGAGCACGGTGGTCTTCacgcccaccgccctcctttctttcc
tttccccgccctacATGGCCTTGCTGGGAGGGATCGGACTCTGGGTTGCC
ACGCTTCACACGGCCGTTGTCGGCTATCTCCTCCCGGGGGCTCACGCCCT
GAGCAACGTCTTGGGACCTCGGCTTCTTGCCAATACGGGCGTGGCAGGCG
GGTGCTTGGGTTTTggtgccttcctcttcgtcctcctcgcgccTTCCACC
GTGTTGACAAGCCGAGACGCCCACGGTGGCTCGGCCTTTGTCGGGGGGTC
CCTGCTCTCGGGCCTTGTCGGCGGGGCCCTGGTCGGGGTTTTGCTCTCGG
ACATTTTTTGGGAGTGGCGGTGTTTGGATTCCCTTCCGTGTGGCGGAcga
ccctccccgccagcacAGGGGGATacggagcaggagcagggtCCCAGAGC
ACGATCGCCGCCACTGAACTTCTAGATGGGGACGGACCTAGCGCGGCCGC
GATCCTTCAAAGGTCGCCAGAGGCCCGTGGACGACGACTGGGATGACGTA
GACTTGCATTGCGTAGGTAACGCGCACAGGGGCAGTCGACAGTACCCATC
CCGAAGTGCCCAGACACGTGGAAGGGCCTCCCAAGGACagcaagtggagg
gggaaagggcctcGTACAGAAGAAGATGGTCGCATCCAGCCCCGACGACG
GAAGTAGTGCTGGCTCCTGCGTCGTCCCTGGACCCTGTGGGTTTGCAGGA
GAAGAGTTGGCGATTCAACGATTACTTCtggctcgcctcctccctcgccc
tctcccctccagCCTACATGCTGGGGGTCCTGGGGTCCCACCTGGGCCTC
ACCTGGAAATGGTCCGTCctggcttccttcctctctgccctccttgccgc
cgGCCTTGCCGCCTTGACCATGCACGCCCCCAGCAAGTACGGCATCCCTT
TCTGTGTTTCTGCCCGGACCAGCTTTGGaatttttggcgcgaaatttttc
tccctcctccacctagGCCTGGCTTTCCCATGGACGGCGTGGCTCCTCAG
CATTGCGACCGAGGGCCTCCGAGAGGGAATCACgcgcttccgtccctccg
tcGCCACGTGGaacccgctccctccttccttcctgccccccggCCAATCC
TCTCTCCTCAGCCTTCTCTGCCTGGCCAgtagcttcctcctcctcgtctc
cttgcACGCGTTTGGGAAAATCCAGGCGCTTCGTTCGCTCGCGCCCGTCC
TcagcaccctcctccttgccttctaCGTGGGTCTGGGAATATGGGCCtac
cgcctccttggcctcgaCACCGGGCTCCACGCCTACGACGCAAaggtcct
ccctgcctccctccctccctcccctcccttccctctctacacctccctgc
ccctcgccgtcctcctcggttTGGGCGCGTGGAcgacccccctcctcctt
ggctggGGCGACTTGAGTCGATGGTGTAGTCTGCGCCCGTCTCCGCGCCA
TGCCCTCCTGGtggttttccccctcctctcccctctcacCACCTTTCTGG
GCTGCTTCCTCACGGGCACCGTCGCGCGCGGTTGGAGCACGGTGGTCTTC
acgcccaccgccctcctttctttcctttccccgccctacATGGCCTTGCT
GGGAGGGATCGGACTCTGGGTTGCCACGCTTCACACGGCCGTTGTCGGCT
ATCTCCTCCCGGGGGCTCACGCCCTGAGCAACGTCTTGGGACCTCGGCTT
CTTGCCAATACGGGCGTGGCAGGCGGGTGCTTGGGTTTTggtgccttcct
cttcgtcctcctcgcgccTTCCACCGTGTTGACAAGCCGAGACGCCCACG
GTGGCTCGGCCTTTGTCGGGGGGTCCCTGCTCTCGGGCCTTGTCGGCGGG
GCCCTGGTCGGGGTTTTGCTCTCGGACATTTTTTGGGAGTGGCGGTGTTT
GGATTCCCTTCCGTGTGGCGGAcgaccctccccgccagcacAGGGGGATa
cggagcaggagcagggtCCCAGAGCACGATCGCCGCCACTGAACTTCTAG
ATGGGGACGGACCTAGCGCGGCCGCGATCCTTCAAAGGTCGCCAGAGGCC
CGTGGACGACGACTGGGATGACGTAGACTTGCATTGCGTAGGTAACGCGC
ACAGGGGCAGTCGACAGTACCCATCCCGAAGTGCCCAGACACGTGGAAGG
GCCTCCCAAGGACagcaagtggagggggaaagggcctcGTACAGAAGAAG
ATGGTCGCATCCAGCCCCGACGACGGAAGTAGTGCTGGCTCCTGCGTCGT
CCCTGGACCCTGTGGGTTTGCAGGAGAAGAGTTGGCGATTCAACGATTAC
TTCtggctcgcctcctccctcgccctctcccctccagCCTACATGCTGGG
GGTCCTGGGGTCCCACCTGGGCCTCACCTGGAAATGGTCCGTCctggctt
ccttcctctctgccctccttgccgccgGCCTTGCCGCCTTGACCATGCAC
GCCCCCAGCAAGTACGGCATCCCTTTCTGTGTTTCTGCCCGGACCAGCTT
TGGaatttttggcgcgaaatttttctccctcctccacctagGCCTGGCTT
TCCCATGGACGGCGTGGCTCCTCAGCATTGCGACCGAGGGCCTCCGAGAG
GGAATCACgcgcttccgtccctccgtcGCCACGTGGaacccgctccctcc
ttccttcctgccccccggCCAATCCTCTCTCCTCAGCCTTCTCTGCCTGG
CCAgtagcttcctcctcctcgtctccttgcACGCGTTTGGGAAAATCCAG
GCGCTTCGTTCGCTCGCGCCCGTCCTcagcaccctcctccttgccttcta
CGTGGGTCTGGGAATATGGGCCtaccgcctccttggcctcgaCACCGGGC
TCCACGCCTACGACGCAAaggtcctccctgcctccctccctccctcccct
cccttccctctctacacctccctgcccctcgccgtcctcctcggttTGGG
CGCGTGGAcgacccccctcctccttggctggGGCGACTTGAGTCGATGGT
GTAGTCTGCGCCCGTCTCCGCGCCATGCCCTCCTGGtggttttccccctc
ctctcccctctcacCACCTTTCTGGGCTGCTTCCTCACGGGCACCGTCGC
GCGCGGTTGGAGCACGGTGGTCTTCacgcccaccgccctcctttctttcc
tttccccgccctacATGGCCTTGCTGGGAGGGATCGGACTCTGGGTTGCC
ACGCTTCACACGGCCGTTGTCGGCTATCTCCTCCCGGGGGCTCACGCCCT
GAGCAACGTCTTGGGACCTCGGCTTCTTGCCAATACGGGCGTGGCAGGCG
GGTGCTTGGGTTTTggtgccttcctcttcgtcctcctcgcgccTTCCACC
GTGTTGACAAGCCGAGACGCCCACGGTGGCTCGGCCTTTGTCGGGGGGTC
CCTGCTCTCGGGCCTTGTCGGCGGGGCCCTGGTCGGGGTTTTGCTCTCGG
ACATTTTTTGGGAGTGGCGGTGTTTGGATTCCCTTCCGTGTGGCGGAcga
ccctccccgccagcacAGGGGGATacggagcaggagcagggtCCCAGAGC
ACGATCGCCGCCACTGAACTTCTAGATGGGGACGGACCTAGCGCGGCCGC
GATCCTTCAAAGGTCGCCAGAGGCCCGTGGACGACGACTGGGATGACGTA
GACTTGCATTGCGTAGGTAACGCGCACAGGGGCAGTCGACAGTACCCATC
CCGAAGTGCCCAGACACGTGGAAGGGCCTCCCAAGGACagcaagtggagg
gggaaagggcctcGTACAGAAGAAGATGGTCGCATCCAGCCCCGACGACG
GAAGTAGTGCTGGCTCCTGCGTCGTCCCTGGACCCTGTGGGTTTGCAGGA
GAAGAGTTGGCGATTCAACGATTACTTCtggctcgcctcctccctcgccc
tctcccctccagCCTACATGCTGGGGGTCCTGGGGTCCCACCTGGGCCTC
ACCTGGAAATGGTCCGTCctggcttccttcctctctgccctccttgccgc
cgGCCTTGCCGCCTTGACCATGCACGCCCCCAGCAAGTACGGCATCCCTT
TCTGTGTTTCTGCCCGGACCAGCTTTGGaatttttggcgcgaaatttttc
tccctcctccacctagGCCTGGCTTTCCCATGGACGGCGTGGCTCCTCAG
CATTGCGACCGAGGGCCTCCGAGAGGGAATCACgcgcttccgtccctccg
tcGCCACGTGGaacccgctccctccttccttcctgccccccggCCAATCC
TCTCTCCTCAGCCTTCTCTGCCTGGCCAgtagcttcctcctcctcgtctc
cttgcACGCGTTTGGGAAAATCCAGGCGCTTCGTTCGCTCGCGCCCGTCC
TcagcaccctcctccttgccttctaCGTGGGTCTGGGAATATGGGCCtac
cgcctccttggcctcgaCACCGGGCTCCACGCCTACGACGCAAaggtcct
ccctgcctccctccctccctcccctcccttccctctctacacctccctgc
ccctcgccgtcctcctcggttTGGGCGCGTGGAcgacccccctcctcctt
ggctggGGCGACTTGAGTCGATGGTGTAGTCTGCGCCCGTCTCCGCGCCA
TGCCCTCCTGGtggttttccccctcctctcccctctcacCACCTTTCTGG
GCTGCTTCCTCACGGGCACCGTCGCGCGCGGTTGGAGCACGGTGGTCTTC
acgcccaccgccctcctttctttcctttccccgccctacATGGCCTTGCT
GGGAGGGATCGGACTCTGGGTTGCCACGCTTCACACGGCCGTTGTCGGCT
ATCTCCTCCCGGGGGCTCACGCCCTGAGCAACGTCTTGGGACCTCGGCTT
CTTGCCAATACGGGCGTGGCAGGCGGGTGCTTGGGTTTTggtgccttcct
cttcgtcctcctcgcgccTTCCACCGTGTTGACAAGCCGAGACGCCCACG
GTGGCTCGGCCTTTGTCGGGGGGTCCCTGCTCTCGGGCCTTGTCGGCGGG
GCCCTGGTCGGGGTTTTGCTCTCGGACATTTTTTGGGAGTGGCGGTGTTT
GGATTCCCTTCCGTGTGGCGGAcgaccctccccgccagcacAGGGGGATa
cggagcaggagcagggtCCCAGAGCACGATCGCCGCCACTGAACTTCTAG

Synonyms

Publications