rna7931, rna7931 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7931
Unique Name	rna7931
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1135
Alignment location	KK037247.1:137095..139271 +

Link to JBrowse

Properties


Property Name	Value
Product	mitochondrial ornithine transporter 1
Orig transcript id	gnl\|cribi\|Naga_100297g2.7173.mrna
Orig protein id	gnl\|cribi\|Naga_100297g2.7173
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:137095..139271 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100297g2	gene7682	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7931	rna7931-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22765.1	cds7909	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:137095..139271+
coding sequence from alignment at KK037247.1:137095..139271+

mRNA sequence

>rna7931 ID=rna7931|Name=rna7931|organism=Nannochloropsis gaditana|type=mRNA|length=1135bp
CATATAACTTCCTTCCTTCCTTCCCTCCCTCTCACCCGGCCATCACTCGC
TCCTTGGTCCTCTCCCCTCCTCCCCCCCCTCCCTCCCTCCCTCACTCACT
CACCCCTAGACATGGGTGAAGTCAGGGTCCAGAGCCTATGGAGCGCCTTC
CACGAGCCTTTCATACGGCAACCCTCCTCTCTCGCCGCCAACCAACTCCT
TCCCCCCCCTCCCTCCCTCCCTGACTCTGCCAAGAGGAGCAAACGGATGC
ATGGGGCAGCCTCTGCCGGAAAAGCCCGGAAAAAACCGGCCAAGCGAGGA
AAGAAAGAGGGAGAGGGAAGGAGAGAGGACCTCGAACGGGAGCCAAGCGA
TGGAGAAACGCCTGTCCCATTGGTCTCGGCGACCGCGTCAGCGTCAATGG
GAAGCCTGGGTGCGGCGCCAGCCGCCTCAGGCGAGGAGGGAATCTCAGAG
ATTCCCTCCAGTCAGGCCCCGGCGGCTTGGGAATGGGAAGGGAGCGAGAC
AGAATCGGAGGATGAGGGGAAGGGGGAGGGGGAACGGGGTGGGCAGGGAC
TTCTGACGTCGATGGACAATGACCCGCTGGACTATGCTAGTGACACGGAC
GCCAACGAGATGCGTCTTTTGGAGGAGGAGGGGGGGCTAGATTGAGGGAA
AAAGGGAGACAACGGTGCCATACCCTCCATTATTTTTACAGCTTCGTTTT
GTCCCAGATGGAAGCTTTAGGAATTGAAACAACACCTGCACGAATTATCT
TGGGTCAGGTATCTGAAAACATCCTCGGGGGGGTCGTTGGATTCGACATC
ACGTATGAGACAACATGATCGTAAAGCGTACCGTAGGTGGCATTGTTAAA
TATATCTATATCGTCCACGTCACTGATGTTCGTGTTTAAAATTGATTGAA
GGTGAAGCATTTTATTGATCATTTAATTTGCTGATTGATTGATCATCGAG
TATTTTATGCCTCGAGAGGTACCTTCACAGCGCGTTGTGTGAATCCAGTA
TCCGATATTCATCCTCTCTACATAAGTCTTTACTTCTACAAAGCCCCATC
ATGCACGCTCTTTAGCATGTTTCCGCGTCGAACGATTCATCTAGACCACA
AACAATTAGTTTGATGACCTGTTGATCTTTCTCCA

protein sequence of rna7931

>rna7931-protein ID=rna7931-protein|Name=rna7931|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MSSSSSSTTTSPNAGNNLSAPMAVDGQASFFPADVVHAAKDVLSSIVGSA
MCVYTGQPFDTVKVRMQARPEAFSSPIQCFISTFREEGLRALWKGSVPAL
VGAVSENAVAFSVNQQLKRILADLEGYGLGNESNQESRKAEAKEESLVVP
FLTGGFTGIFTSAALCPSDVIKCKVQVSRAMLKTGETAMDAQEMLVHVLK
TQGVKGLFVGLGAQFARDIPFYAFFFGTYELSLVALKAYTTMPQEGAYLV
AGGLAGVAGWAAVMPIDMAKSIIQTSPNPKSLIPTMMDVARTRGPMALYS
GLGVAVFRAFPANAALFLGYELAREILD

mRNA from alignment at KK037247.1:137095..139271+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7931 ID=rna7931|Name=rna7931|organism=Nannochloropsis gaditana|type=mRNA|length=2177bp|location=Sequence derived from alignment at KK037247.1:137095..139271+ (Nannochloropsis gaditana)
AGCGTACGTGACCTCCACTCGTTTTGGAGCTTAAAAGGAACGCAGTTTTC
ACATCCGGCCCACTGCGGCGACAAGACAGAGGGTGTACGCGAGCCAAGAC
GAGCTAGAGTAAATATTTGATACGAGCGACCGAAAACAAGGTTCAAGGCG
CGGGATCTCTTGTCACTGCTTCACGGAAAGCAGCGCAGCCAAGAGAGGAA
ACAAATTGAAGTCGGGTactgcagctgctgcttATCAAGTCAAACCACCA
ACAGCTACGGATgtcttcgtcgtcgtcctccaccaccacctcgccAAATG
CAGGCAACAATCTGAGTGCCCCCATGGCAGTGGACGGCCAGGCCAGCTTC
TTCCCGGCGGACGTGGTACACGCCGCCAAGGATGTCTTGTCATCCATTGT
GGGCTCAGCGATGTGCGTCTACACTGGGCAGCCTTTCGATACAGGTAATG
CTTGTGTCGAAGatacgaaggggaggaaaacgaaCACTTGGCGCTACAAG
CTCGAATTCGTGTTTTGAGTTATTTTTCGATTAAGAGTACTATATTACCC
CCATCCCATCCATCCTGACAGTAAAAGTACGAATGCAAGCCCGTCCTGAG
GCGTTCAGCTCTCCCATTCAATGTTTTATCAGCACGttcagagaagaagg
gctcCGGGCCCTTTGGAAGGGAAGCGTCCCCGCATTGGTCGGCGCCGTCA
GTGAGAACGCGGTCGCTTTCAGCGTCAACCAGCAGCTGAAGCGGATATTG
GCCGATTTGGAAGGATACGGCCTGGGGAATGAGAGCAACCAGGAAAGTCG
GAAGgcggaagcgaaggaggaaagcttgGTTGTGCCCTTCTTGACGGGCG
GTTTTACAGGCATcttcacctccgccgccctctGTCCCAGCGACGTGATC
AAATGCAAAGTCCAGGTCTCCCGCGCCATGCTAAAGACAGGAGAAACCGC
CATGGACGCCCAGGAAATGCTGGTCCACGTCTTGAAGACCCAGGGTGTCA
AGGGCTTGTTCGTGGGGCTGGGGGCCCAGTTTGCCCGCGACATCCCTTTC
TACGCCTTCTTCTTTGGGACCTACGAATTGAGCTTGGTCGCCCTCAAGGC
CTACACGACCATGCCCCAAGAAGGAGCGTATCTAGTGGCGGGTACGTGGT
GGTCAGGATATTCACCTCGGCTTCCATTTGTGTCTGGAACAAGCCGGCTC
CACatctctccatccccctcttgACCCGCCCTTCGTTCTCTTGACATTCC
GTTTTTCTTTTATTCAGGTGGTTTGGCAGGTGTGGCGGGCTGGGCGGCCG
TCATGCCGATCGACATGGCCAAAAGCATCATACAAACCTCCCCGAACCCC
AAAAGCCTCATCCCTACCATGATGGACGTGGCGCGGACCAGGGGCCCGAT
GGCCCTGTATTCAGGTGGGTaaagtggaaggagaggcggaagcacTCAAA
GCAACCGGTCACTTCGCCGTTCATTAGAATTGGGCATTCATAGATGTAGA
ATTTGAATGTGAAAATGGCTTGTCGAGGGCTCTATCAGTATCACGCTGCT
TAACATGGTCTCCGTCTTGATATATATCGTCCCTTTCTATAGGTCTGGGA
GTAGCTGTGTTCCGTGCCTTTCCTGCCAAtgccgccctcttccttggaTA
TGAGCTGGCCAGAGAAATTTTGGACTAGCTTCCTCGACGCACGGCGTCAA
GAGGAAGTTTATTGTTGCTGATGTTGCCAGAGGGCTGCATATAGGCCACC
ACACCACGCTTGAGAGCTTCCTCTTTTCGGTCCGTAGCTTTACTGTGCCA
AGAAGCACAATGGAACAAATAAAGAAATCTCACATTCATGCGTGTGATGC
GTAATGATGCAGCGATGTAAATATACATGCATAACTCTCATGGTTGGTAC
TTGGAATTCCGACAGCAACTGTAGCAGATCTGTCGCTCTATCAGCAATAG
GAAAAATGTTTATAAATGGTAGTGAGAGCTAGATACAGCGCATGTCTACA
GAATGGGGGTAATCCGTATAGAAGGTTCTAATGCATCGATACTACAACTA
CTTTCTTGTCacatgaagagggagcaATGGAAATGAGGACTGTCGGTAGT
AGAGTGGATTTTCCGAGGGATTAGAAGCGAAATTTTACAATAAGTTGAAA
ATAAAAGCCAGAAATATTGGACTGAAT

Coding sequence (CDS) from alignment at KK037247.1:137095..139271+

>rna7931 ID=rna7931|Name=rna7931|organism=Nannochloropsis gaditana|type=CDS|length=3948bp|location=Sequence derived from alignment at KK037247.1:137095..139271+ (Nannochloropsis gaditana)
ATgtcttcgtcgtcgtcctccaccaccacctcgccAAATGCAGGCAACAA
TCTGAGTGCCCCCATGGCAGTGGACGGCCAGGCCAGCTTCTTCCCGGCGG
ACGTGGTACACGCCGCCAAGGATGTCTTGTCATCCATTGTGGGCTCAGCG
ATGTGCGTCTACACTGGGCAGCCTTTCGATACAGTAAAAGTACGAATGCA
AGCCCGTCCTGAGGCGTTCAGCTCTCCCATTCAATGTTTTATCAGCACGt
tcagagaagaagggctcCGGGCCCTTTGGAAGGGAAGCGTCCCCGCATTG
GTCGGCGCCGTCAGTGAGAACGCGGTCGCTTTCAGCGTCAACCAGCAGCT
GAAGCGGATATTGGCCGATTTGGAAGGATACGGCCTGGGGAATGAGAGCA
ACCAGGAAAGTCGGAAGgcggaagcgaaggaggaaagcttgGTTGTGCCC
TTCTTGACGGGCGGTTTTACAGGCATcttcacctccgccgccctctGTCC
CAGCGACGTGATCAAATGCAAAGTCCAGGTCTCCCGCGCCATGCTAAAGA
CAGGAGAAACCGCCATGGACGCCCAGGAAATGCTGGTCCACGTCTTGAAG
ACCCAGGGTGTCAAGGGCTTGTTCGTGGGGCTGGGGGCCCAGTTTGCCCG
CGACATCCCTTTCTACGCCTTCTTCTTTGGGACCTACGAATTGAGCTTGG
TCGCCCTCAAGGCCTACACGACCATGCCCCAAGAAGGAGCGTATCTAGTG
GCGGGTGGTTTGGCAGGTGTGGCGGGCTGGGCGGCCGTCATGCCGATCGA
CATGGCCAAAAGCATCATACAAACCTCCCCGAACCCCAAAAGCCTCATCC
CTACCATGATGGACGTGGCGCGGACCAGGGGCCCGATGGCCCTGTATTCA
GGTCTGGGAGTAGCTGTGTTCCGTGCCTTTCCTGCCAAtgccgccctctt
ccttggaTATGAGCTGGCCAGAGAAATTTTGGACTAGATgtcttcgtcgt
cgtcctccaccaccacctcgccAAATGCAGGCAACAATCTGAGTGCCCCC
ATGGCAGTGGACGGCCAGGCCAGCTTCTTCCCGGCGGACGTGGTACACGC
CGCCAAGGATGTCTTGTCATCCATTGTGGGCTCAGCGATGTGCGTCTACA
CTGGGCAGCCTTTCGATACAGTAAAAGTACGAATGCAAGCCCGTCCTGAG
GCGTTCAGCTCTCCCATTCAATGTTTTATCAGCACGttcagagaagaagg
gctcCGGGCCCTTTGGAAGGGAAGCGTCCCCGCATTGGTCGGCGCCGTCA
GTGAGAACGCGGTCGCTTTCAGCGTCAACCAGCAGCTGAAGCGGATATTG
GCCGATTTGGAAGGATACGGCCTGGGGAATGAGAGCAACCAGGAAAGTCG
GAAGgcggaagcgaaggaggaaagcttgGTTGTGCCCTTCTTGACGGGCG
GTTTTACAGGCATcttcacctccgccgccctctGTCCCAGCGACGTGATC
AAATGCAAAGTCCAGGTCTCCCGCGCCATGCTAAAGACAGGAGAAACCGC
CATGGACGCCCAGGAAATGCTGGTCCACGTCTTGAAGACCCAGGGTGTCA
AGGGCTTGTTCGTGGGGCTGGGGGCCCAGTTTGCCCGCGACATCCCTTTC
TACGCCTTCTTCTTTGGGACCTACGAATTGAGCTTGGTCGCCCTCAAGGC
CTACACGACCATGCCCCAAGAAGGAGCGTATCTAGTGGCGGGTGGTTTGG
CAGGTGTGGCGGGCTGGGCGGCCGTCATGCCGATCGACATGGCCAAAAGC
ATCATACAAACCTCCCCGAACCCCAAAAGCCTCATCCCTACCATGATGGA
CGTGGCGCGGACCAGGGGCCCGATGGCCCTGTATTCAGGTCTGGGAGTAG
CTGTGTTCCGTGCCTTTCCTGCCAAtgccgccctcttccttggaTATGAG
CTGGCCAGAGAAATTTTGGACTAGATgtcttcgtcgtcgtcctccaccac
cacctcgccAAATGCAGGCAACAATCTGAGTGCCCCCATGGCAGTGGACG
GCCAGGCCAGCTTCTTCCCGGCGGACGTGGTACACGCCGCCAAGGATGTC
TTGTCATCCATTGTGGGCTCAGCGATGTGCGTCTACACTGGGCAGCCTTT
CGATACAGTAAAAGTACGAATGCAAGCCCGTCCTGAGGCGTTCAGCTCTC
CCATTCAATGTTTTATCAGCACGttcagagaagaagggctcCGGGCCCTT
TGGAAGGGAAGCGTCCCCGCATTGGTCGGCGCCGTCAGTGAGAACGCGGT
CGCTTTCAGCGTCAACCAGCAGCTGAAGCGGATATTGGCCGATTTGGAAG
GATACGGCCTGGGGAATGAGAGCAACCAGGAAAGTCGGAAGgcggaagcg
aaggaggaaagcttgGTTGTGCCCTTCTTGACGGGCGGTTTTACAGGCAT
cttcacctccgccgccctctGTCCCAGCGACGTGATCAAATGCAAAGTCC
AGGTCTCCCGCGCCATGCTAAAGACAGGAGAAACCGCCATGGACGCCCAG
GAAATGCTGGTCCACGTCTTGAAGACCCAGGGTGTCAAGGGCTTGTTCGT
GGGGCTGGGGGCCCAGTTTGCCCGCGACATCCCTTTCTACGCCTTCTTCT
TTGGGACCTACGAATTGAGCTTGGTCGCCCTCAAGGCCTACACGACCATG
CCCCAAGAAGGAGCGTATCTAGTGGCGGGTGGTTTGGCAGGTGTGGCGGG
CTGGGCGGCCGTCATGCCGATCGACATGGCCAAAAGCATCATACAAACCT
CCCCGAACCCCAAAAGCCTCATCCCTACCATGATGGACGTGGCGCGGACC
AGGGGCCCGATGGCCCTGTATTCAGGTCTGGGAGTAGCTGTGTTCCGTGC
CTTTCCTGCCAAtgccgccctcttccttggaTATGAGCTGGCCAGAGAAA
TTTTGGACTAGATgtcttcgtcgtcgtcctccaccaccacctcgccAAAT
GCAGGCAACAATCTGAGTGCCCCCATGGCAGTGGACGGCCAGGCCAGCTT
CTTCCCGGCGGACGTGGTACACGCCGCCAAGGATGTCTTGTCATCCATTG
TGGGCTCAGCGATGTGCGTCTACACTGGGCAGCCTTTCGATACAGTAAAA
GTACGAATGCAAGCCCGTCCTGAGGCGTTCAGCTCTCCCATTCAATGTTT
TATCAGCACGttcagagaagaagggctcCGGGCCCTTTGGAAGGGAAGCG
TCCCCGCATTGGTCGGCGCCGTCAGTGAGAACGCGGTCGCTTTCAGCGTC
AACCAGCAGCTGAAGCGGATATTGGCCGATTTGGAAGGATACGGCCTGGG
GAATGAGAGCAACCAGGAAAGTCGGAAGgcggaagcgaaggaggaaagct
tgGTTGTGCCCTTCTTGACGGGCGGTTTTACAGGCATcttcacctccgcc
gccctctGTCCCAGCGACGTGATCAAATGCAAAGTCCAGGTCTCCCGCGC
CATGCTAAAGACAGGAGAAACCGCCATGGACGCCCAGGAAATGCTGGTCC
ACGTCTTGAAGACCCAGGGTGTCAAGGGCTTGTTCGTGGGGCTGGGGGCC
CAGTTTGCCCGCGACATCCCTTTCTACGCCTTCTTCTTTGGGACCTACGA
ATTGAGCTTGGTCGCCCTCAAGGCCTACACGACCATGCCCCAAGAAGGAG
CGTATCTAGTGGCGGGTGGTTTGGCAGGTGTGGCGGGCTGGGCGGCCGTC
ATGCCGATCGACATGGCCAAAAGCATCATACAAACCTCCCCGAACCCCAA
AAGCCTCATCCCTACCATGATGGACGTGGCGCGGACCAGGGGCCCGATGG
CCCTGTATTCAGGTCTGGGAGTAGCTGTGTTCCGTGCCTTTCCTGCCAAt
gccgccctcttccttggaTATGAGCTGGCCAGAGAAATTTTGGACTAG

Synonyms

Publications