rna7926, rna7926 (mRNA) Nannochloropsis gaditana

Overview
Namerna7926
Unique Namerna7926
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1914
Alignment locationKK037247.1:129304..129865 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100554g3.201.mrna
Orig protein idgnl|cribi|Naga_100554g3.201
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:129304..129865 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100554g3gene7678Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7926rna7926-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22767.1cds7904Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7926 ID=rna7926|Name=rna7926|organism=Nannochloropsis gaditana|type=mRNA|length=1914bp
ACCATGTTGCACAGGTGTGTGGTAAGCAGATAGCAGAGAAGGGTTCGGAG
CACATTGGCGCCATATCATTCCCGCAGCACTATTGGCAGCCCCAGCAAGA
ACAGGGATGGGAACACTAAAATATCCCCGCTCGAACAACGTCGTCGGTCT
GATATCTCACCATCTTGGCGTCTGACGGCCTTCTTGCTAGCCCGACTGGG
GATGGACGATATACCCTCAGGAATGCATGGCTCCACGCCCACACATAACG
CGTCCTCTGGCACGGCAGCGGCAGGCCCTGCCCCTGAGGTTACTGCCCCC
TTTCCGCCCGTCCTCGTGACTGGCGTAGAGATGAAAGGCTTGCACACAAG
CGCCAGTACCTACAAAAGGGGCCGGGAGCGGGAGGATTCTGGGACCTTTT
CTCTTCCAAGGGGAGGACCAGAGGCATCATTGGGCAAGGGATGCGGGGAG
GTGGAATCCATTATCAATGGACAGGCGATCAAACGTTTGCGCATTGCAGG
ATCCGTCGACCTGAGTGAGATCGTCGACCTGCACGACCCATTCGATGGAG
GAGTGCAAGGGGCTGGGAGAGGAGAGGGGGGCAAGGAAGGAGGAGGAGGA
GGAGGAGGAGGAGGGGAGGGAGGAGGTCTGTGTGACGCCTTTATCTATCA
CCGGCAATTACTGCGTCTTCACCAGCGCCAAGAGCACGAAAAAGGGCGGA
AATCCACACCGGCACAGCCACACGTTCCAGCTACCCCTTCCGAGCCTGAA
ACAGGAAACGATCTCGCTGAGTGGCACCTGCACAAGGCGTCACGTGGTCC
GCTGGAACGAAGCACCAGCAGTGGGAGCAAGGAGGCGAGCCGCCCAGGCA
TTGGCGGTGATGGGAGTGACCGGTCGGGCAGGGTGGGCGCCCTCGCCCCA
ACAGAGAGCGGAGCCCGGGAGAGGGACGGTCTGCCGCGATCTCTGTCTGA
CCCGTGTCTTGCCTCACCGGGGGCTCCGGGAGGGGCGAGTCCTGGGAGCA
TGGAGAAAGGGAGGAAGGAAGGGAGGGGGTATCGGGCGAATCCTGCGGAC
CAGCAGGGATGGCGTCGCCCAGGAAGCTCTTCGCCCTCCTCCCCCCGATC
CTCCGAAGGGAGGAAGGGGGGGAAGGAGGGCAGGAGGGACGGGGGTATTG
GCGGGTCGGAGGACGGGCATGCCAGGGGCTGGGTGCGGGGGGAGGTGGCT
TGGGAGGAAGCGGACGTGAACTACTCGTTGATCAACAACCTGTTGGGACG
TTTGCATTTGGAGAAAGTTCGACGCTTTGTGCCTTATGGTCCTGCGGGCG
GTCCTGGGAAGGAGAGGGGCATGGACGCTGGCTCGGGGTAGATGGAGGGG
GAGGGGGAGGACGGGGAAATGGCAGAGGGGGATAACGACTTACATGGTAT
ATTTTGGGTTGTGCCGCAAAAGCTTGTATGTACATAGGCGGTGTCTGGGG
AGGGGCGAGAAAATGGTCGATTTGGAATGACGAACACTGCCAAGTTGACC
TGAGCACGCGTGATGACACAGGAGGGCTTTGGGAACGACAGGCAGGAGGC
CACGATACAAGTTGGCAGTCTATGTAAGACCTTTTTCTTTTGTGACCTGG
GAGCTGTGCATAGATTGAACATTGGAATGTGAACATTGAATAATCAAACG
GGCTGCTGGGAAGACGAAGAAAGCAGAGTGGGATGACAAGGACAGGCGAC
CTGCCGCTCCCAAAGAAGAAAAGTACAGACGCCTCCTGACCCCGCGCTCA
TCCGCTGCTAGCAGTGAGAGCCCGAGCATGCCTACGAGAGATGCGTACTA
AAAACGGTACCAAAGTACCCAAGTTCAATCCCTGATGGAACGGAAGATTA
TTATTCGCATGCAATGAAGGCGTCTTTCGCGCATCTTTATGGTCTGGACA
TTTTGAAAGGTGGT
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protein sequence of rna7926

>rna7926-protein ID=rna7926-protein|Name=rna7926|organism=Nannochloropsis gaditana|type=polypeptide|length=165bp
MGRGGGWGVSLFSITSIPYHPHDNSRTGWHLLSPPFWTPSLWWGVLVPVR
RDASRVSPNGGYTSGLHGESGQREREEQPCACRIVVTIQRNQMASNLSST
VHTCLRRPACHHLSKCPDHKDARKTPSLHANNNLPFHQGLNLGTLVPFLV
RISRRHARALTASSG
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mRNA from alignment at KK037247.1:129304..129865-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7926 ID=rna7926|Name=rna7926|organism=Nannochloropsis gaditana|type=mRNA|length=562bp|location=Sequence derived from alignment at KK037247.1:129304..129865- (Nannochloropsis gaditana)
ATGGGTAGAGGAGGAGGATGGGGGGTGTCTTTATTTTCGATAACGTCCAT
TCCATACCATCCACACGACAACTCACGCACAGGCTGGCATCTGCTATCAC
CGCCTTTTTGGACTCCGAGCTTGTGGTGGGGAGTCTTGGTCCCAGTTCGG
CGTGACGCGTCTCGCGTCTCACCCAACGGAGGGTATACATCAGGGCTACA
TGGGGAAGTCACTTGAAGGGGGGATGGGGGGGGCGACGTGATATGGAGTG
GCGTGGACTTGGGTATGACAGTCGGGGCAGAGAGAACGGGAGGAGCAGCC
ATGTGCATGTAGGATAGTGGTTACCATACAAAGAAATCAAATGGCTTCAA
ATTTGTCGAGTACAGTGCACACATGTCTCCGTCGACCGGCATGTCACCAC
CTTTCAAAATGTCCAGACCATAAAGATGCGCGAAAGACGCCTTCATTGCA
TGCGAATAATAATCTTCCGTTCCATCAGGGATTGAACTTGGGTACTTTGG
TACCGTTTTTAGTACGCATCTCTCGTAGGCATGCTCGGGCTCTCACTGCT
AGCAGCGGATGA
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Coding sequence (CDS) from alignment at KK037247.1:129304..129865-

>rna7926 ID=rna7926|Name=rna7926|organism=Nannochloropsis gaditana|type=CDS|length=996bp|location=Sequence derived from alignment at KK037247.1:129304..129865- (Nannochloropsis gaditana)
TCGGGGCAGAGAGAACGGGAGGAGCAGCCATGTGCATGTAGGATAGTGGT
TACCATACAAAGAAATCAAATGGCTTCAAATTTGTCGAGTACAGTGCACA
CATGTCTCCGTCGACCGGCATGTCACCACCTTTCAAAATGTCCAGACCAT
AAAGATGCGCGAAAGACGCCTTCATTGCATGCGAATAATAATCTTCCGTT
CCATCAGGGATTGAACTTGGGTACTTTGGTACCGTTTTTAGTACGCATCT
CTCGTAGGCATGCTCGGGCTCTCACTGCTAGCAGCGGATGAATGGGTAGA
GGAGGAGGATGGGGGGTGTCTTTATTTTCGATAACGTCCATTCCATACCA
TCCACACGACAACTCACGCACAGGCTGGCATCTGCTATCACCGCCTTTTT
GGACTCCGAGCTTGTGGTGGGGAGTCTTGGTCCCAGTTCGGCGTGACGCG
TCTCGCGTCTCACCCAACGGAGGGTATACATCAGGGCTACATGGGGAATC
GGGGCAGAGAGAACGGGAGGAGCAGCCATGTGCATGTAGGATAGTGGTTA
CCATACAAAGAAATCAAATGGCTTCAAATTTGTCGAGTACAGTGCACACA
TGTCTCCGTCGACCGGCATGTCACCACCTTTCAAAATGTCCAGACCATAA
AGATGCGCGAAAGACGCCTTCATTGCATGCGAATAATAATCTTCCGTTCC
ATCAGGGATTGAACTTGGGTACTTTGGTACCGTTTTTAGTACGCATCTCT
CGTAGGCATGCTCGGGCTCTCACTGCTAGCAGCGGATGAATGGGTAGAGG
AGGAGGATGGGGGGTGTCTTTATTTTCGATAACGTCCATTCCATACCATC
CACACGACAACTCACGCACAGGCTGGCATCTGCTATCACCGCCTTTTTGG
ACTCCGAGCTTGTGGTGGGGAGTCTTGGTCCCAGTTCGGCGTGACGCGTC
TCGCGTCTCACCCAACGGAGGGTATACATCAGGGCTACATGGGGAA
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Synonyms
Publications