rna7925, rna7925 (mRNA) Nannochloropsis gaditana

Overview
Namerna7925
Unique Namerna7925
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length533
Alignment locationKK037247.1:127455..129470 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100554g2.205.mrna
Orig protein idgnl|cribi|Naga_100554g2.205
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:127455..129470 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100554g2gene7677Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7925rna7925-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22771.1cds7903Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7925 ID=rna7925|Name=rna7925|organism=Nannochloropsis gaditana|type=mRNA|length=533bp
ACGTAGATCCTTTCTACTCTGAACACCTTCAGTCCAGGTGGTTGATTTTC
CTCGCGAATCACAGCTGCAAACGGGATCATATAATTGTCTCGGGCTCTGG
GAACGTGCGAAGCTTTCCTTCAGTGCATCTAATCCATTCGACGATTTCCT
GGACGCATCCGCGTCTACTGTCTTGACAAAAAGTCATGGAGTCAAAGCGA
GTAGAGCAAAGGGTCGACGAAGAGCGCCATAGCGTCCACGCGGGGGGCAC
AAATGATTCGCGGAGTTCTGAGGGGAGGGTTCAACAGGGTCATGGAAGAA
ACAGTAAGATGCTGTTACCATTCATGTCCAAGTTTGAGTGCTTCGAGCTC
TACGATTGTCCCGTTCAGGGCCTGCTTCTACTGGCAGGGACGGATCTCAA
GAAGCATGGCTACAGAATCCTCCGCCTGGACAAACGGGTGCCTGTCAACG
CCCATACCCCACTGAGTCAGGTGGTCTCGGAGGAACCCATCACCTACACG
GCAGCGTCGTGGTTGCTTTACCTCGAGAGACTT
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protein sequence of rna7925

>rna7925-protein ID=rna7925-protein|Name=rna7925|organism=Nannochloropsis gaditana|type=polypeptide|length=379bp
MDDIPSGMHGSTPTHNASSGTAAAGPAPEVTAPFPPVLVTGVEMKGLHTS
ASTYKRGREREDSGTFSLPRGGPEASLGKGCGEVESIINGQAIKRLRIAG
SVDLSEIVDLHDPFDGGVQGAGRGEGGKEGGGGGGGGGEGGGLCDAFIYH
RQLLRLHQRQEHEKGRKSTPAQPHVPATPSEPETGNDLAEWHLHKASRGP
LERSTSSGSKEASRPGIGGDGSDRSGRVGALAPTESGARERDGLPRSLSD
PCLASPGAPGGASPGSMEKGRKEGRGYRANPADQQGWRRPGSSSPSSPRS
SEGRKGGKEGRRDGGIGGSEDGHARGWVRGEVAWEEADVNYSLINNLLGR
LHLEKVRRFVPYGPAGGPGKERGMDAGSG
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mRNA from alignment at KK037247.1:127455..129470+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7925 ID=rna7925|Name=rna7925|organism=Nannochloropsis gaditana|type=mRNA|length=2016bp|location=Sequence derived from alignment at KK037247.1:127455..129470+ (Nannochloropsis gaditana)
ACCATGTTGCACAGGTGTGTGGTAAGCAGATAGCAGAGAAGGGTTCGGAG
CACATTGGCGCCATATCATTCCCGCAGCACTATTGGCAGCCCCAGCAAGA
ACAGGGATGGGAACACTAAAATATCCCCGCTCGAACAACGTCGTCGGTCT
GATATCTCACCATCTTGGCGTCTGACGGCCTTCTTGCTAGCCCGACTGGG
GATGGACGATATACCCTCAGGAATGCATGGCTCCACGCCCACACATAACG
CGTCCTCTGGCACGGCAGCGGCAGGCCCTGCCCCTGAGGTTActgccccc
tttccgcccgtCCTCGTGACTGGCGTAGAGATGAAAGGCTTGCACACAAG
CGCCAGTACCTACAAAAGGGgccgggagcgggaggattCTGGGacctttt
ctcttccaagGGGAGGACCAGAGGCATCATTGGGCAAGGGATGCGGGGAG
GTGGAATCCATTATCAATGGACAGGCGATCAAACGTTTGCGCATTGCAGG
ATCCGTCGACCTGAGTGAGATCGTCGACCTGCACGACCCATTCGATGGAG
GAGTGCAaggggctgggagaggagaggggggcaaggaaggaggaggagga
ggaggaggaggaggggagggaggaggtctgtGTGACGCCTTTATCTATCA
CCGGCAATTACTGCGTCTTCACCAGCGCCAAGAGCACGAAAAAGGGCGGA
AATCCACACCGGTATGATTGGTGCTTGGGACGGCCAGAAGGGTGGTGGCA
TCTTTATTCTTTTCGGCAGAATTTTTATTCTCACCAGTAGTcatgtcttc
tccttccttccaggcACAGCCACACGTTCCAGCTACCCCTTCCGAGCCTG
AAACAGGAAACGATCTCGCTGAGTGGCACCTGCACAAGGCGTCACGTGGT
CCGCTGGAACGAAGCACCAGCAGtgggagcaaggaggcgagCCGCCCAGG
CATTGGCGGTGATGGGAGTGACCGGTCGGGCAGGGTGGGCGCCCTCGCCC
CAACAGAGAGCGGAGcccgggagagggacggtCTGCCGCGATCTCTGTCT
GACCCGTGTCTTGCCTCACCGGGGGCTCCGGGAGGGGCGAGTCCTGGGAg
catggagaaagggaggaaggaagggagggggtatCGGGCGAATCCTGCGG
ACCAGCAGGGATGGCGTCGCCCAGGaagctcttcgccctcctccccccga
tcctccgaagggaggaagggggggaaggagggcaggagggacgggggtaT
TGGCGGGTCGGAGGACGGGCATGCCAGGGGCtgggtgcggggggaggtgg
cttgggaggaagcggacgtgAACTACTCGTTGATCAACAACCTGTTGGGA
CGTTTGCATTTGGAGAAAGTTCGACGCTTTGTGCCTTATGGTCCTGCGGG
CGGTcctgggaaggagaggggcatgGACGCTGGCTCGGGGtagatggagg
gggagggggaggacggggaaatgGCAGAGGGGGATAACGACTTACATGGT
ATATTTTGGGTTGTGCCGCAAAAGCTTGTATGTACATAGGCGGTGtctgg
ggaggggcgagaaaaTGGTCGATTTGGAATGACGAACACTGCCAAGTTGA
CCTGAGCACGCGTGATGACACAGGAGGGCTTTGGGAACGACAGGCAGGAG
GCCACGATACAAGTTGGCAGTCTATGTAAGACCTTTTTCTTTTGTGACCT
GGGAGCTGTGCATAGATTGAACATTGGAATGTGAACATTGAATAATCAAA
CGGGCTGctgggaagacgaagaaagcAGAGTGGGATGACAAGGACAGGCG
ACCTGCCGCTCCCAAAGAAGAAAAGTACAGACGCCTCCTGACCCCGCGCT
CATCCGCTGCTAGCAGTGAGAGCCCGAGCATGCCTACGAGAGATGCGTAC
TAAAAACGGTACCAAAGTACCCAAGTTCAATCCCTGATGGAACGGAAGAT
TATTATTCGCATGCAATGAAGGCGTCTTTCGCGCATCTTTATGGTCTGGA
CATTTTGAAAGGTGGT
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Coding sequence (CDS) from alignment at KK037247.1:127455..129470+

>rna7925 ID=rna7925|Name=rna7925|organism=Nannochloropsis gaditana|type=CDS|length=2280bp|location=Sequence derived from alignment at KK037247.1:127455..129470+ (Nannochloropsis gaditana)
ATGGACGATATACCCTCAGGAATGCATGGCTCCACGCCCACACATAACGC
GTCCTCTGGCACGGCAGCGGCAGGCCCTGCCCCTGAGGTTActgccccct
ttccgcccgtCCTCGTGACTGGCGTAGAGATGAAAGGCTTGCACACAAGC
GCCAGTACCTACAAAAGGGgccgggagcgggaggattCTGGGaccttttc
tcttccaagGGGAGGACCAGAGGCATCATTGGGCAAGGGATGCGGGGAGG
TGGAATCCATTATCAATGGACAGGCGATCAAACGTTTGCGCATTGCAGGA
TCCGTCGACCTGAGTGAGATCGTCGACCTGCACGACCCATTCGATGGAGG
AGTGCAaggggctgggagaggagaggggggcaaggaaggaggaggaggag
gaggaggaggaggggagggaggaggtctgtGTGACGCCTTTATCTATCAC
CGGCAATTACTGCGTCTTCACCAGCGCCAAGAGCACGAAAAAGGGCGGAA
ATCCACACCGgcACAGCCACACGTTCCAGCTACCCCTTCCGAGCCTGAAA
CAGGAAACGATCTCGCTGAGTGGCACCTGCACAAGGCGTCACGTGGTCCG
CTGGAACGAAGCACCAGCAGtgggagcaaggaggcgagCCGCCCAGGCAT
TGGCGGTGATGGGAGTGACCGGTCGGGCAGGGTGGGCGCCCTCGCCCCAA
CAGAGAGCGGAGcccgggagagggacggtCTGCCGCGATCTCTGTCTGAC
CCGTGTCTTGCCTCACCGGGGGCTCCGGGAGGGGCGAGTCCTGGGAgcat
ggagaaagggaggaaggaagggagggggtatCGGGCGAATCCTGCGGACC
AGCAGGGATGGCGTCGCCCAGGaagctcttcgccctcctccccccgatcc
tccgaagggaggaagggggggaaggagggcaggagggacgggggtaTTGG
CGGGTCGGAGGACGGGCATGCCAGGGGCtgggtgcggggggaggtggctt
gggaggaagcggacgtgAACTACTCGTTGATCAACAACCTGTTGGGACGT
TTGCATTTGGAGAAAGTTCGACGCTTTGTGCCTTATGGTCCTGCGGGCGG
TcctgggaaggagaggggcatgGACGCTGGCTCGGGGtagATGGACGATA
TACCCTCAGGAATGCATGGCTCCACGCCCACACATAACGCGTCCTCTGGC
ACGGCAGCGGCAGGCCCTGCCCCTGAGGTTActgccccctttccgcccgt
CCTCGTGACTGGCGTAGAGATGAAAGGCTTGCACACAAGCGCCAGTACCT
ACAAAAGGGgccgggagcgggaggattCTGGGaccttttctcttccaagG
GGAGGACCAGAGGCATCATTGGGCAAGGGATGCGGGGAGGTGGAATCCAT
TATCAATGGACAGGCGATCAAACGTTTGCGCATTGCAGGATCCGTCGACC
TGAGTGAGATCGTCGACCTGCACGACCCATTCGATGGAGGAGTGCAaggg
gctgggagaggagaggggggcaaggaaggaggaggaggaggaggaggagg
aggggagggaggaggtctgtGTGACGCCTTTATCTATCACCGGCAATTAC
TGCGTCTTCACCAGCGCCAAGAGCACGAAAAAGGGCGGAAATCCACACCG
gcACAGCCACACGTTCCAGCTACCCCTTCCGAGCCTGAAACAGGAAACGA
TCTCGCTGAGTGGCACCTGCACAAGGCGTCACGTGGTCCGCTGGAACGAA
GCACCAGCAGtgggagcaaggaggcgagCCGCCCAGGCATTGGCGGTGAT
GGGAGTGACCGGTCGGGCAGGGTGGGCGCCCTCGCCCCAACAGAGAGCGG
AGcccgggagagggacggtCTGCCGCGATCTCTGTCTGACCCGTGTCTTG
CCTCACCGGGGGCTCCGGGAGGGGCGAGTCCTGGGAgcatggagaaaggg
aggaaggaagggagggggtatCGGGCGAATCCTGCGGACCAGCAGGGATG
GCGTCGCCCAGGaagctcttcgccctcctccccccgatcctccgaaggga
ggaagggggggaaggagggcaggagggacgggggtaTTGGCGGGTCGGAG
GACGGGCATGCCAGGGGCtgggtgcggggggaggtggcttgggaggaagc
ggacgtgAACTACTCGTTGATCAACAACCTGTTGGGACGTTTGCATTTGG
AGAAAGTTCGACGCTTTGTGCCTTATGGTCCTGCGGGCGGTcctgggaag
gagaggggcatgGACGCTGGCTCGGGGtag
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Synonyms
Publications