rna7910, rna7910 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7910
Unique Name	rna7910
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4889
Alignment location	KK037247.1:77849..78448 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102367g1.2516.mrna
Orig protein id	gnl\|cribi\|Naga_102367g1.2516
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:77849..78448 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102367g1	gene7661	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22785.1	cds7888	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7910	rna7910-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:77849..78448-
coding sequence from alignment at KK037247.1:77849..78448-

mRNA sequence

>rna7910 ID=rna7910|Name=rna7910|organism=Nannochloropsis gaditana|type=mRNA|length=4889bp
GTGGCTAAGTGGGCACCACGTGGACTAGCGTACTGTTTTCATGAAAAAAA
GGTAGGGGCTATTAATCAAACAGGCGTCGTAGCCCTGTTTTCTGAGGGAA
AAAGCGAAGAGGAACAGGACACGTACTCATGAGTGGCACATGAGCGGATT
TCGGAGGGCAGCCAGTTCTTTGGCTCTGTCACATACACACATGCATGGCC
TTTTTCTGATGTAGAAATTGTGCGTGGCCGTTTGTCATTACGAGTCACAT
TCGCACGTGTGGCTCCTTTGTTTCATGTCATCCACGTTGTGTGTACTTTT
AATGTCCGTCAGAGGTTGAGAGATAACTTCGTACGTTGTTCTGTTACACG
CATTCCCTTGGTGCCTGGGAGAATGAGATGAACGCTCCGATGTTAGAAAA
TCAACAAGTGGAAAGGTAGTAAATTGCTTCAGTGGTTGGGACAGCCCTGT
TGACCACGAGTAAAGCGAAGCACTTCATTATCATCAAAGTGCGTGCGAAA
TGGAATGGGAAGGAGGATGAAAACAGGACAACGAACGTACTTAAAACACG
TGCCTAAAACCTGAATCCAACATCTCAACATCATGCAAGACAGGAGAGCG
ACGGACTCGGAGCCACCATCTTTGTAGATACCCAACGTATCGTGTCGCCG
CTGCGCACGTAGGAAGAATCTCTGTCGAGTACAGGTAGTATCACTTCTTC
CATAAACTCCGGGCAGACCGGCAGCCACGGGAAGGCTCCACACCACTCTG
GCCGCCACAAGGATTTTAAGCTCAAAGCGATCTGTGGTGCTTCCGTCGTC
ATCTTGTGTAGAAGCCACCTGATTGTCCCTGTGCGCCTTACCCAGTGCAA
GCATGTATCTGTTCAAGAGTAAGAAAAAGCCTGCTGGCAAGGGCGGATCT
CCTTATGGTCATAAGGAGAAGATTGACGACCATGAGAGGACCTACAACCT
TCACTACCGCAAACAAGAGCAGCCCCAACCAGGACACCGGTATCAAGTGA
ACCCGCAGCACGGACACGTTCCGGGCCTTTCCCCTCTCGAGCACGTCCAC
CCCATCTCCCCCGAACATGACTCGTGGCAACACCACGGTGGCCGGGGCTC
TTACCCTGCGAACGACCCTTGTCTGAGAGACCAGGGTTACTACCACCATG
CCCCGCCATACCAGCCGCAGGAAAACGGAGAGCACTGCGGCACCCTGGAT
GGAAGGGGCCGTTGGCCCGTCTGCCAACGTCCCAAGATGCAAAGCATCAT
TGCGGACGAACAGGACGCCCACACTGCTGCCACCTTTGTGTTTGACGAGG
ATGAGTACAGTAGCTACGATTCCTTTTCCAACCCTATCCCAGCTGGGCGG
CTGCGGCAGTGCCCGCCACCGCAACACCGACGACAGCCACCACAGGGGGG
AGGACAGCCACCACAGGGAGGAGGACACCGGTACAATTTCTTCCTTTCCC
CCTTACGTGGCAGCAAGAAAAGGCAGCAATCCGTCGCAGCGGCCGCAGCG
CCCACACAAAGTGACCTGCCGACGTACCGATTCCCGCCTCAATCCCAGCC
ACAGTGCCACAATGAGAACGGACGCGAAGGAGGGTACGTGCATCGGATCC
ACCCCTTTCCAACCGAGAAGGGGTTGCAGACGCAGGACCCGCGTGGTCCA
GAGCGACATGAGCAACGAGGGACGGGGCGGCAGCTGGAGCCTCTGGGAGA
GCCTAATGTGTCGTTGCATCGAGACGACGGCGGGACGGACGACCTGTCCT
CTACCCTTCCCCGGACACCACGCGGCTCGGATTCTCTGCCTTTGCCACCC
CTCGCCGGTGGGCGCCCGCGTCAGGTGATGGGGCAGTACGAGATTCTGGA
AACCTTGGGGAAAGGCATGAGCGGGAAGGTGAAGAAGGCTCGGCACATCC
AGACAGGGCAGGAGGTGGCGTTGAAGATCGTCGACAAATCAAAGGCTGTC
AAACGCACGCTTCTTCAGCTTCGCACCGAAATCACGGCCTTGAAGACCGT
GCGCCATCCCAACGTTCTGGAGCTTTTGCACGTGGAGCTTGACGCAGTTT
ACGTGAAGAAAAATGGGACCAAGGTACCCTCGATTGCCCTGGCCTTACAG
CTCGCCGCGGGTGGCGAATTGTTCGATTTTATGATGTATACGGGTTATTT
TCGGGAAGATATAGCCCGCACGCTCTTCCGGCAGCTGGTTGGGGCCATGC
AGTACTGCCACGATCGGAACATCTACCATCGAGACATCAAGCCGGAGAAT
TTGCTTTTGGACTCCTTTTTCCAACTTAAGATCGCCGACTTTGGCTTGGC
CGCCATCCGTTCCGATCCATTGGACGTGTTGCGGACCGAGTGCGGGACTC
GCTCGTACATGGCACCGGAGATTTTACAGCACGAGGGTTACGAAGGGGGA
AAAGCGGACGTGTGGTCGATGGGGGTGGTGCTCTTCATCCTCTTGGCGGG
GAACCCTCCCTTTCAAATGGCGCGACGGGGGGACTGGTGGTTCAACGCCT
TGTTGGAGAACGATTGGGAACGGTTTTGGAAGGCCCATTTAAAGTACGCC
CCCCATTTCCCTCCGGCCGCCCAGACCTTTCTATCCTCCCTTTTTGAGCC
CTGTCCTTCCCGCCGGCCTAGTACGGAGCAAGTGCTGCATTCCGAATGGC
TCGCCGGTCCCTGCCTGACGCCGGACCAGCTCCACGCGGAAATGGCGGCC
CGGCAAGCAAACGTGGCGCGGGAGAAGGCAAAAGAACGGGAGAAGGCGAA
AGCCGAGAAACTGCGCAAGGCACAGGAAGCTCAAGCCGCCGCCGCGGCAG
TGGCCCAGGCCCGTGGAACGTCCACAGCCGACGGACCTGGGATGTCAGGG
CTTGCGTCCCACAACGCGGTGGCGACGGCTGTCCCGGACGTGACGTGTGG
GAGCGACGTGATGTTCCAGGACCACATGACGCGCCGGCGGTCCGTGAGTG
GAGGGGAGGGCGAGGTGGAGGTGGTGGGGCTGGCGGAGGGCGGGGAAGGG
GGTATGAAAGAAGGTGGGGATGGACGCACTCGGAAACAAGCCCCGCTTTT
GCCGTCTGAGAAAGGACTGAAGGCCTACACGTACTTTTATTCCCACGCGT
CCGACTCGGAGGAGCTTTTGGACCGGCTGCATTTCGTCTTGATGATGCGC
ATGTCGGCGACGATCAAACCACGGGAGCATACCCAGCAAGAGGAGGCGGA
GGGTGCCGGCTTCCACCTGCGGTGCCTGGTCCCCCTAACGGCCGCAAAAG
TGCGGATGGACGTACGGCTGTGGCGGGTGGAGGACGAGGGGGAGGGAGAG
GGGGAGGGAGCGAAGGTGGTGTTGCACGTGGTAGAGGCGGTGCGGAAGGC
GGGGGACCCTGTCCTCTTTCATCGCTTGTACAACAACTTGAAGAGAAAGA
TGGAGGAGGAAGAGAGAGTGACGGCGGGGAAGCTGGGAACGCTGGAATCG
GGGCTTGCCTTGCCTTGGCTCTTGCCCTCCACACCCTCCAGAGAGGCGCG
AACGAAGGCGACCGAAGCAGGGATGGAGGGAGGGGGGGAGAGCGGAAAGG
AGGGGGAGGAAGAGTATCCGCCTCCGGAGCCTTTGCACGAGGAAAGAATG
AGCGATCTGGTGGGAATGCTGTAAAGAGATCGAGGCGGAGAGGTAAATAG
GGGAGAAAGAGACGTTTTTAGCAGGGAAGATTTACGCGCAGAGAACCCAC
GAGAGATGGCGAAACGGGGGAGAAGGGATCAAATAGTGAAGGCAGGGAGG
AATCAGTAAGAGGGTAGTGTAAGGAGAAGGTCGGAAGTGTACGAGGTATA
CGTGTGAATGAAAGACCGTGGAAACATATGGCCAATATTCCTCATTCGAA
GAGAGGAGGAAGGTCGACGGCGTCAGAAAAGATAAGAGAGCGGCAGTGGT
AGATTTAATCGGGAAGAAGGAGGAAGTTTTAGCGTATAGATATGTTGTGG
TTGTATACGAGCAACAGGTATGACGGGTGCGAGCGCGCCTTGACCAACTC
CCATTTTTATGCTATGCCTCAAACAAACGTCACGGTGTGACGAACAGCTA
CGATTGCAACACACACAACGGTTACGACTGACGTAACGGTTGCAACACAC
GGAAAAGGTTGCAGTAAAATGTCATGCATCAGGTATTCACATGCGTGCGG
TTCAAAACCTGGTGACATTTCAGGGTAGGAATAAGCACGACAAAGGGGGG
AAATACAGAAGTTGTAACTGGAAAAGGCGTGTCATACGAGTAGAGGAGAG
GTGCCCGAGTCTTTTTTGAGGAAGAAGAATCCCGTGTACGTCATGCACAG
AAAAGAGAACATTAGACTCCGTTGGAAGTGGCAAGGGAGAGAGAAACTCT
CTGTAAGAGCAGCGAAGGATGCATGCAGGATGTGAAGAAGCAGATACAGA
AGCAGTTAGACGGGTGGCATGCTAAAAGACAATACAGCACAGCCCTGGGA
GTCTAGGGCGTTCACGGGGCCGCGTACAGCTTTTGAAGCTCTCAGCTTTG
AGTGTAGATAGCATTTAAGAATTTAAAAAAAGGGGAATGAAGGGAATTAA
TTAATATACTAATGGCTCGTACTTTCCGCAAGCAAATTAATGCACGCATG
ATGAATAACAAACGAGGCACCGGGACATCCTGCAATATAAAGGCACGTGG
GTGGCTGCGTTGTTGAAGAAATTACCAAGACACGAAACGGAATGTAAAAA
GACAGCTTACGCCCTCGACGCGGAATGTAACGAAATATGTTGTCTTGACT
TTTCCCATTGGAATTTATCATGCTTTGGTGCTGACGAGATCGATAACCTT
CACATCTTCCCTTGTGAAATAATTCCGTCATTCGGTCTCTCCATAGTTTT
CAAAGGGAAACAAAAACAATTAAAACCTGTTCATTGACA

protein sequence of rna7910

>rna7910-protein ID=rna7910-protein|Name=rna7910|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
MVATGSFRKRPCPIEGVLPRRRCLLPSSPSFLSSLLPYLPTVSFPLETLC
FLLTLSLCAIFCFRIIINILPDMLFPRCLFCIPPTALVFERPAWWPQCCK

mRNA from alignment at KK037247.1:77849..78448-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7910 ID=rna7910|Name=rna7910|organism=Nannochloropsis gaditana|type=mRNA|length=600bp|location=Sequence derived from alignment at KK037247.1:77849..78448- (Nannochloropsis gaditana)
AAAGTGCCCAAGCATGCGGGATAGTAAGTTCTTTTTTCTGTCCTTTGATG
CCGTTGACTGCAGGCGTCGTTGCTGAGGATATTAGCCCCCTTTCAGCATG
GAAATGAAGCAAACCAACCCTACTTCTGTGGGAGGCATGCCTCCTCCCTG
TGTGAGCTCTGGAGAAGGGAGAATCCAGGACCGTCAGGCTGGGCGACTTA
AGGTGACTGCAACATGGTGGCGACGGGATCTTTTCGTAAACGTCCTTGTC
CGATCGAGGGCGTGCTTCCCAGGCGTCGATGCCTCCTCCCTTCCTCCCCC
TCCTTCCTTTCCTCCCTCCTTCCCTACCTGCCCACCGTTTCTTTTCCCCT
CGAGACTCTTTGCTTCCTCCTGACCTTGTCTTTGTGCGCAATATTTTGCT
TCCGTATTATTATAAATATTCTACCCGACATGTTATTCCCCCGGTGCTTA
TTTTGCATCCCTCCGACGGCTCTGGTATTTGAACGGCCAGCGTGGTGGCC
GCAATGTTGCAAGTAATAGCTCAACGTCACCCGATCGCGTCAGACATTTT
GAACGCATCCCTCCCTTTAGAAATAAAAAACATCCCATTTCGGTGCGCAT

Coding sequence (CDS) from alignment at KK037247.1:77849..78448-

>rna7910 ID=rna7910|Name=rna7910|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at KK037247.1:77849..78448- (Nannochloropsis gaditana)
ATGGTGGCGACGGGATCTTTTCGTAAACGTCCTTGTCCGATCGAGGGCGT
GCTTCCCAGGCGTCGATGCCTCCTCCCTTCCTCCCCCTCCTTCCTTTCCT
CCCTCCTTCCCTACCTGCCCACCGTTTCTTTTCCCCTCGAGACTCTTTGC
TTCCTCCTGACCTTGTCTTTGTGCGCAATATTTTGCTTCCGTATTATTAT
AAATATTCTACCCGACATGTTATTCCCCCGGTGCTTATTTTGCATCCCTC
CGACGGCTCTGGTATTTGAACGGCCAGCGTGGTGGCCGCAATGTTGCAAG
TAA

Synonyms

Publications