rna7904, rna7904 (mRNA) Nannochloropsis gaditana

Overview
Namerna7904
Unique Namerna7904
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length833
Alignment locationKK037247.1:61850..62848 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101359g2.4708.mrna
Orig protein idgnl|cribi|Naga_101359g2.4708
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:61850..62848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101359g2gene7656Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7904rna7904-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22792.1cds7882Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7904 ID=rna7904|Name=rna7904|organism=Nannochloropsis gaditana|type=mRNA|length=833bp
GGCTTTCCTTACAAGACACATGTGGATTTCACCACTTTCGGACTTTCCGA
GGATGGTGTCGTTTTCTTCCGCTTATTTGAAGATGTCTTACCAATTTATT
CCACAGGGGGAGAGACGCGTTCGTCAGCTTCAGCAGGAAATCCGGGTAAT
TCACAGGGGGCATTACTCTACGATCTATGTCTCCCTTCTACCACGAATAA
TCATACCAACCTATTTATTTTGCCAGTATAACGTCGATCATGTCGGCAAT
GACGGATGAGTCCACCATGGAGGACGAAGCGGCAGATGTCTTGGGGTGTG
AGACCACGGGGCAACCTTCGTCCTACGAAACCCTAGTAGAAGAGAACAGA
CGGCTCAAAGCCCAGCTTCACTGCCAGGAGTCACAGTTGCGACTCCACGA
GCAGGAGCGACTCAAGCAGGGACGACATATCCCTCCTCCATCGGCCCATT
TCCCTCCTTGCGCCTCCACTGCCTCCCCTCCCGTCCCCTCTCCCCCGGCT
TCCTCCTCCTCCTCTTCCCCTTCCAACCCTCTTCCTCTTCCTCCCGTACA
CTCTCTGTCCTCGTCGGAGATCTCTAGATATTCACGCCAGCTGCTTGTCT
CCCGCTTTGGGGTCACGGGTCAGAGGAACCTGCTCTCGTCCTCCGTCCTG
GTCGTAGGGGCCGGTGATCCATGGGGACAGCCAGGTGGGGACGAAGAAGG
CGGTCTCGGCCTCGGCTCGAGTCCGGGATTTGAATGGTGGCCTGCGGGTG
AGCGTGCTGGAGGAGGACGTGGGCTATGGGAACGTGGCGTCGGTGATTGC
CGGGTGGGACCTGGTGGTGGACGCGAGCGATAA
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protein sequence of rna7904

>rna7904-protein ID=rna7904-protein|Name=rna7904|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp
MSPPPSPGARGKRKERSVSLSSERGGNGAARIQKTHHGHHKKRKSEERDE
RGRNGRQRRGENGRNEDDNNRREEEEDEFGRGERGRGDRRREGRRRSESE
GQGGGWRGGRRRSESEERGREGRREARERRSRSRSPRRGYEGSGRPHSPP
TRRQLEREREARQGQGRWEGVREGNEGREGRRSRWEAGNGGGVERGATAL
PGETYEEFRLRRRRELGEESAVDVWARSPSPPTRSEGRAKAGGKEGALKK
KEHGREGKKVEKKTGSKRRKKKPRSPSPSSSSSSSSSSSSSSSSSTSSSS
S
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mRNA from alignment at KK037247.1:61850..62848+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7904 ID=rna7904|Name=rna7904|organism=Nannochloropsis gaditana|type=mRNA|length=999bp|location=Sequence derived from alignment at KK037247.1:61850..62848+ (Nannochloropsis gaditana)
CAGCACCATCTCCACAAATCGTCAACTATACTCCCCATTTCACGATGTAT
GACATCCCGGGACAGGTAGAACCACAGCGGCGGTCACTTTTTCGGCatgt
ctccgcctccgtcgccGGGGGCGCGTGGGAAACGCAAGGAAAGGAGCGTA
TCATTGTCctcggaaagaggaggaaatggagccGCACGAATCCAGAAGAC
ACACCACGGACACCacaaaaaaaggaaaagtgaAGAACGGGACGAAAGGG
GCCGGAATGGGCGGCAGCGGCGCGGGGAAAATGGTAGAAACGAGGATGAC
AATAACCGacgtgaggaagaggaagacgagtttgggcggggggaaagagg
gcgaggggatcgaaggcgggagggaaggaggaggagcgagagcgaggggc
AAGGTGGAggttggaggggggggagaaggaggagtgagagcgaggagagg
ggaagagaggggaggagggaggcacgggaAAGGCGTAGCAGGAGTCGCAG
TCCTCGGAGAGGGTATGAAGGGTCCGGCCGACCTCATTCTCCCCCCACGC
GGCGGCAATTGGAACGAGAGCGGGAGGCACGCCAGGGacagggaaggtgg
gagggtgtgcgggaagggaatgaaggccgggaaggacggaggtcGCGATG
GGAAGCAGGCAATGGGGGAGGAGTAGAAAGAggggccacggccttgcCCG
GAGAGACCTACGAGGAATTTCGGTTGCGACGACGCCGAGAGCTCGGGGAG
GAGTCGGCGGTGGATGTCTGGGCAcgttcgccctcccccccgacgaggag
tgaggggagggccaaggcgggcgggaaggagggggctttgaagaagaagg
agcacgggagggaagggaaaaaggtggagaagaagacgggttcgaagagg
aggaaaaagaagccacggagtccctctccctcctcctcttcctcctcttc
ctcctcttcctcctcctcctcttcgtcgtcgacctcctcctcctcctct
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Coding sequence (CDS) from alignment at KK037247.1:61850..62848+

>rna7904 ID=rna7904|Name=rna7904|organism=Nannochloropsis gaditana|type=CDS|length=903bp|location=Sequence derived from alignment at KK037247.1:61850..62848+ (Nannochloropsis gaditana)
atgtctccgcctccgtcgccGGGGGCGCGTGGGAAACGCAAGGAAAGGAG
CGTATCATTGTCctcggaaagaggaggaaatggagccGCACGAATCCAGA
AGACACACCACGGACACCacaaaaaaaggaaaagtgaAGAACGGGACGAA
AGGGGCCGGAATGGGCGGCAGCGGCGCGGGGAAAATGGTAGAAACGAGGA
TGACAATAACCGacgtgaggaagaggaagacgagtttgggcggggggaaa
gagggcgaggggatcgaaggcgggagggaaggaggaggagcgagagcgag
gggcAAGGTGGAggttggaggggggggagaaggaggagtgagagcgagga
gaggggaagagaggggaggagggaggcacgggaAAGGCGTAGCAGGAGTC
GCAGTCCTCGGAGAGGGTATGAAGGGTCCGGCCGACCTCATTCTCCCCCC
ACGCGGCGGCAATTGGAACGAGAGCGGGAGGCACGCCAGGGacagggaag
gtgggagggtgtgcgggaagggaatgaaggccgggaaggacggaggtcGC
GATGGGAAGCAGGCAATGGGGGAGGAGTAGAAAGAggggccacggccttg
cCCGGAGAGACCTACGAGGAATTTCGGTTGCGACGACGCCGAGAGCTCGG
GGAGGAGTCGGCGGTGGATGTCTGGGCAcgttcgccctcccccccgacga
ggagtgaggggagggccaaggcgggcgggaaggagggggctttgaagaag
aaggagcacgggagggaagggaaaaaggtggagaagaagacgggttcgaa
gaggaggaaaaagaagccacggagtccctctccctcctcctcttcctcct
cttcctcctcttcctcctcctcctcttcgtcgtcgacctcctcctcctcc
tct
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Synonyms
Publications