rna7902, rna7902 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7902
Unique Name	rna7902
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1008
Alignment location	KK037247.1:59376..59991 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_102982g1.2067.mrna
Orig protein id	gnl\|cribi\|Naga_102982g1.2067
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:59376..59991 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102982g1	gene7654	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22793.1	cds7880	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7902	rna7902-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:59376..59991-
coding sequence from alignment at KK037247.1:59376..59991-

mRNA sequence

>rna7902 ID=rna7902|Name=rna7902|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTTCGTCTTTC
CCGACAGGCCTACGCTTCCCGTCTTCACGCGCAGACGCCTCACTATCTCA
TCGACGTCCGGGACCCCACCCAATTTGCCATCTGCTCCTTACCGAATGCC
ATCAATATCCCCCTGGCCTCCCTCGCGTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTCATCTCCCTCTCCTGAAGGCGGGAAGGACGACGGGGCTACCA
CTACCTCCCCATTTCTCTCGCTTCCTTCACTCCCCCCCCGCGATGCTCCT
GTCTACGTGATCTGTCGCCGCGGTGTCATGTCTCAAAAAGCGACCCGGAT
GTTGCTGGAGGGAGGGTGGCAGCGGGTGTGGAACGTGAGGGGGGGACTGG
TGCAGTGGAGGGAGGAGGTCGACGGGCAATTCCCCATGTACTGAGGTACG
TAGAGCGGGCAGGCGAGAAGGGAAAGGTACAATTCAGGAACGGAGGGGAT
CTGTAAGAGCAGAGGGAGACCACAAAAGGTGACAATGATGTACGCTCTCG
GATCGGCGGGAAGGAAGACGGGGTCTCGCTCCCAGATTTCCTGTCCTTTC
TTGGGATAATAGATGATGAAGCAGTGGGATTGCTTGCATGGAAGCAAAGA
AAAGGCGGGGGTCCAGGCTCGAAGAGTCTCGTCGTCTTCGCCTTGATCAG
GAAAAGCGAGGGCAGGAAGTCAATCCAAAAAAGACTTTCTTTATCCCCCA
ACGGGCGGGCGCGCCGCGCTTTGCCAGCAGGTGCCCTAAGAGGAAATTCC
TTCGCTTTACTTCATTCCTCCCCATCCTGCCTCTGCCTTACATCGACCTG
TGTCCATTCCCCCTTATCCCTCCTTCCTTCCCTCCCTCCCTCCCTCGCTC
CTCCCTCCTTCCGGGTCACAACAGCCAACGCTCCAAGCGATCCCACTCTT
CACTCCACCTGTCTGCTTGCTTCTGCCCCATCCATTCCATCCATCGCCCC
AGGCACCC

protein sequence of rna7902

>rna7902-protein ID=rna7902-protein|Name=rna7902|organism=Nannochloropsis gaditana|type=polypeptide|length=127bp
GSSQAPGRQPRPPSPLLPPPPLRRHLLHLPLPLPRPPPSSLPACPLCSGQ
LTTLAECASWAAERNLRGPRLTCPSSLPPSLPPSLLPPEHDITCQVGPRL
GRRDGGRGEGREGGREDGKAPPSCPDT

mRNA from alignment at KK037247.1:59376..59991-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7902 ID=rna7902|Name=rna7902|organism=Nannochloropsis gaditana|type=mRNA|length=616bp|location=Sequence derived from alignment at KK037247.1:59376..59991- (Nannochloropsis gaditana)
GGAAGTTCTCAAGCTCCTGGCCGACAGCCCCGCCCTCCCTCCCCTCTCCT
CCCGCCTCCTCCTCTACGACGGCACCTCCTCCACCTCCCCCTTCCTCTCC
CTCGCCCTCCCCCTTCCTCCCTCCCTGCCTGCCCTCTATGCTCCGGCCAA
CTCACCACCCTGGCGGAGTGTGCCTCGTGGGCAGCGGAACGAAACCTTCG
AGGTCCGCGCCTGACCTGCCCGTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTGCTTCCACCGGAGCATGACATCACTTGCCAGGTGGGACCTCGCCTT
GGGAGGAGGGATGGTGGGAGAGGGGAAGGGAGGGAGGGAGGGAGAGAGGA
CGGGAAGGCACCACCCTCCTGCCCCGACACTTGAGCGGGATTGGAGATGT
TACCAGTGTTTTCATCCCTCCCTCTCGCTCTCCTTTTTCCCCCTCCCTCC
TTCCCTCCTTTCTTTCCTCCTTCACATCGTTCTTTCTTGCCTCCCTCCTT
CCCTCCTTTCTCCCGTCCCTCCTATCCTCCTTTCCTTCCTTCCTGACTAG
CACTTTCTCTTCGAGTGCACATTATGGTCTTTTTCTCTTGACGCGTGACT
CCGTGAGTCTAATGCC

Coding sequence (CDS) from alignment at KK037247.1:59376..59991-

>rna7902 ID=rna7902|Name=rna7902|organism=Nannochloropsis gaditana|type=CDS|length=384bp|location=Sequence derived from alignment at KK037247.1:59376..59991- (Nannochloropsis gaditana)
GGAAGTTCTCAAGCTCCTGGCCGACAGCCCCGCCCTCCCTCCCCTCTCCT
CCCGCCTCCTCCTCTACGACGGCACCTCCTCCACCTCCCCCTTCCTCTCC
CTCGCCCTCCCCCTTCCTCCCTCCCTGCCTGCCCTCTATGCTCCGGCCAA
CTCACCACCCTGGCGGAGTGTGCCTCGTGGGCAGCGGAACGAAACCTTCG
AGGTCCGCGCCTGACCTGCCCGTCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTGCTTCCACCGGAGCATGACATCACTTGCCAGGTGGGACCTCGCCTT
GGGAGGAGGGATGGTGGGAGAGGGGAAGGGAGGGAGGGAGGGAGAGAGGA
CGGGAAGGCACCACCCTCCTGCCCCGACACTTGA

Synonyms

Publications