rna7901, rna7901 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7901
Unique Name	rna7901
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	591
Alignment location	KK037247.1:58266..59273 -

Link to JBrowse

Properties


Property Name	Value
Product	adenylyltransferase and sulfurtransferase mocs3
Orig transcript id	gnl\|cribi\|Naga_102055g2.10487.mrna
Orig protein id	gnl\|cribi\|Naga_102055g2.10487
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037247.1	supercontig	KK037247.1:58266..59273 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_102055g2	gene7653	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22794.1	cds7879	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7901	rna7901-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037247.1:58266..59273-
coding sequence from alignment at KK037247.1:58266..59273-

mRNA sequence

>rna7901 ID=rna7901|Name=rna7901|organism=Nannochloropsis gaditana|type=mRNA|length=591bp
GAGGAAATCAGCGCCAAGAGCTTGAGTGAGGTCAAAGACATGATGGAGGC
CTTGGGCCTGGGTGGCTTGTCCCCTTCTGGTTCCTCGAGAAAGGCCGAGG
GAGGGAAGGGGGCCGGACGGGTACGGGGGGACGAAGAGGAGGCACCGCGC
CAATGCCATGCACGGAGTAGGAAGGGGGGGAAGGAGGGAGGGAGGGAGGG
AGGGAGGAGGGGGTGCCTGGGGCGATGGATGGAATGGATGGGGCAGAAGC
AAGCAGACAGGTGGAGTGAAGAGTGGGATCGCTTGGAGCGTTGGCTGTTG
TGACCCGGAAGGAGGGAGGAGCGAGGGAGGGAGGGAGGGAAGGAAGGAGG
GATAAGGGGGAATGGACACAGGTCGATGTAAGGCAGAGGCAGGATGGGGA
GGAATGAAGTAAAGCGAAGGAATTTCCTCTTAGGGCACCTGCTGGCAAAG
CGCGGCGCGCCCGCCCGTTGGGGGATAAAGAAAGTCTTTTTTGGATTGAC
TTCCTGCCCTCGCTTTTCCTGATCAAGGCGAAGACGACGAGACTCTTCGA
GCCTGGACCCCCGCCTTTTCTTTGCTTCCATGCAAGCAATC

protein sequence of rna7901

>rna7901-protein ID=rna7901-protein|Name=rna7901|organism=Nannochloropsis gaditana|type=polypeptide|length=147bp
SLPPSLPPSLLPSLRLSRQAYASRLHAQTPHYLIDVRDPTQFAICSLPNA
INIPLASLASSLPPSLPPSSSPSPEGGKDDGATTTSPFLSLPSLPPRDAP
VYVICRRGVMSQKATRMLLEGGWQRVWNVRGGLVQWREEVDGQFPMY

mRNA from alignment at KK037247.1:58266..59273-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7901 ID=rna7901|Name=rna7901|organism=Nannochloropsis gaditana|type=mRNA|length=1008bp|location=Sequence derived from alignment at KK037247.1:58266..59273- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTTCGTCTTTC
CCGACAGGCCTACGCTTCCCGTCTTCACGCGCAGACGCCTCACTATCTCA
TCGACGTCCGGGACCCCACCCAATTTGCCATCTGCTCCTTACCGAATGCC
ATCAATATCCCCCTGGCCTCCCTCGCGTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTCATCTCCCTCTCCTGAAGGCGGGAAGGACGACGGGGCTACCA
CTACCTCCCCATTTCTCTCGCTTCCTTCACTCCCCCCCCGCGATGCTCCT
GTCTACGTGATCTGTCGCCGCGGTGTCATGTCTCAAAAAGCGACCCGGAT
GTTGCTGGAGGGAGGGTGGCAGCGGGTGTGGAACGTGAGGGGGGGACTGG
TGCAGTGGAGGGAGGAGGTCGACGGGCAATTCCCCATGTACTGAGGTACG
TAGAGCGGGCAGGCGAGAAGGGAAAGGTACAATTCAGGAACGGAGGGGAT
CTGTAAGAGCAGAGGGAGACCACAAAAGGTGACAATGATGTACGCTCTCG
GATCGGCGGGAAGGAAGACGGGGTCTCGCTCCCAGATTTCCTGTCCTTTC
TTGGGATAATAGATGATGAAGCAGTGGGATTGCTTGCATGGAAGCAAAGA
AAAGGCGGGGGTCCAGGCTCGAAGAGTCTCGTCGTCTTCGCCTTGATCAG
GAAAAGCGAGGGCAGGAAGTCAATCCAAAAAAGACTTTCTTTATCCCCCA
ACGGGCGGGCGCGCCGCGCTTTGCCAGCAGGTGCCCTAAGAGGAAATTCC
TTCGCTTTACTTCATTCCTCCCCATCCTGCCTCTGCCTTACATCGACCTG
TGTCCATTCCCCCTTATCCCTCCTTCCTTCCCTCCCTCCCTCCCTCGCTC
CTCCCTCCTTCCGGGTCACAACAGCCAACGCTCCAAGCGATCCCACTCTT
CACTCCACCTGTCTGCTTGCTTCTGCCCCATCCATTCCATCCATCGCCCC
AGGCACCC

Coding sequence (CDS) from alignment at KK037247.1:58266..59273-

>rna7901 ID=rna7901|Name=rna7901|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at KK037247.1:58266..59273- (Nannochloropsis gaditana)
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTTCGTCTTTC
CCGACAGGCCTACGCTTCCCGTCTTCACGCGCAGACGCCTCACTATCTCA
TCGACGTCCGGGACCCCACCCAATTTGCCATCTGCTCCTTACCGAATGCC
ATCAATATCCCCCTGGCCTCCCTCGCGTCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCTCATCTCCCTCTCCTGAAGGCGGGAAGGACGACGGGGCTACCA
CTACCTCCCCATTTCTCTCGCTTCCTTCACTCCCCCCCCGCGATGCTCCT
GTCTACGTGATCTGTCGCCGCGGTGTCATGTCTCAAAAAGCGACCCGGAT
GTTGCTGGAGGGAGGGTGGCAGCGGGTGTGGAACGTGAGGGGGGGACTGG
TGCAGTGGAGGGAGGAGGTCGACGGGCAATTCCCCATGTACTGA

Synonyms

Publications