rna7900, rna7900 (mRNA) Nannochloropsis gaditana

Overview
Namerna7900
Unique Namerna7900
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length699
Alignment locationKK037247.1:58056..58646 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102055g1.10488.mrna
Orig protein idgnl|cribi|Naga_102055g1.10488
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:58056..58646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102055g1gene7652Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7900rna7900-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22795.1cds7878Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7900 ID=rna7900|Name=rna7900|organism=Nannochloropsis gaditana|type=mRNA|length=699bp
TTGGAACATTACATCACCTCCTGCCTTGTCTGCGCTTTCTCCGCTCTCTT
TGTTATCCCCTGTCTCGTGTAAAACTGATTTTCCCTTTCCCCCTATCCGC
TCCCCTCCCTTCTCTCCCCCCCCTTCTCCCTCCCTCCCTCCCACCCACAG
GCGATCTCCGCCAAGATCGCTCTCATCCCCCTCCTCGCCAAGGCGGACAG
CATGACGGCCGAAGAGACCTTGGCGTTTCGATCTTTTGTTTTTGAGGCCT
GCCAACATCATGCCATCCGGCTCTTCGACTTCGGGTCTGAGGCCAAGCGA
CGTGTGGGGATTCCCACCGATTTGGTGGCCCCGCCCTTTGCGGTCGTTGC
CTCCAATCAATTCGACGAGGTCAAGGGAAGCGGCTCCTTCTGGCCTGTCC
GCGACTACCATTGGGGCACCTGCGAAGCTTTCTCCACGGAACATTCCGAT
TGCACTTACCTTAAGAAGCTTCTGCTGGAGGAGGGTTTCCACGACCTGCG
CCAGGCAACGGAAGAGCGGTACATGGCGTATCGGTGCTCGTACTACCAGG
AAAAAGAGGAGGAAGCACGAGCCAGCCGTGCCAAGGCCGAAAAACAGCGC
CAATTCGGTTGGCTCCTCGTGGCGGTGCTCCTACTTATGGGGGCAGCCCA
CGCGGTTTTCGCGCGTCTGGCAGGGCGGGAGGGAGGGCGGGATGGAGGA
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protein sequence of rna7900

>rna7900-protein ID=rna7900-protein|Name=rna7900|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
EEISAKSLSEVKDMMEALGLGGLSPSGSSRKAEGGKGAGRVRGDEEEAPR
QCHARSRKGGKEGGREGGRRGCLGRWMEWMGQKQADRWSEEWDRLERWLL
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mRNA from alignment at KK037247.1:58056..58646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7900 ID=rna7900|Name=rna7900|organism=Nannochloropsis gaditana|type=mRNA|length=591bp|location=Sequence derived from alignment at KK037247.1:58056..58646+ (Nannochloropsis gaditana)
GAGGAAATCAGCGCCAAGAGCTTGAGTGAGGTCAAAGACATGATGGAGGC
CTTGGGCCTGGGTGGCTTGTCCCCTTCTGGTTCCTCGAGAaaggccgagg
gagggaagggggccggACGGGTAcggggggacgaagaggaggcaccGCGC
CAATGCCATGCACGgagtaggaagggggggaaggagggagggagggaggg
agggaggagggggtgccTGGGGCGATGGATGGAATGGATGGGGCAGAAGC
AAGCAGACAGGTGGAGTGAAGAGTGGGATCGCTTGGAGCGTTGGCTGTTG
TGAcccggaaggagggaggagcgagggagggagggagggaaggaaggagg
gataagGGGGAATGGACACAGGTCGATGTAAGGCAGAGgcaggatgggga
ggaatgAAGTAAAGCGAAGGAATTTCCTCTTAGGGCACCTGCTGGCAAAG
CGCGGCGCGCCCGCCCGTTGGGGGATAAAGAAAGTCTTTTTTGGATTGAC
TTCCTgccctcgcttttcctgATCAAGGCGAAGACGACGAGACTCTTCGA
GCCTGGACCCccgccttttctttgcttccaTGCAAGCAATC
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Coding sequence (CDS) from alignment at KK037247.1:58056..58646+

>rna7900 ID=rna7900|Name=rna7900|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at KK037247.1:58056..58646+ (Nannochloropsis gaditana)
GAGGAAATCAGCGCCAAGAGCTTGAGTGAGGTCAAAGACATGATGGAGGC
CTTGGGCCTGGGTGGCTTGTCCCCTTCTGGTTCCTCGAGAaaggccgagg
gagggaagggggccggACGGGTAcggggggacgaagaggaggcaccGCGC
CAATGCCATGCACGgagtaggaagggggggaaggagggagggagggaggg
agggaggagggggtgccTGGGGCGATGGATGGAATGGATGGGGCAGAAGC
AAGCAGACAGGTGGAGTGAAGAGTGGGATCGCTTGGAGCGTTGGCTGTTG
TGA
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Synonyms
Publications