rna789, rna789 (mRNA) Nannochloropsis gaditana

Overview
Namerna789
Unique Namerna789
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length933
Alignment locationCM002456.1:424061..425188 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100106g1.1440.mrna
Orig protein idgnl|cribi|Naga_100106g1.1440
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:424061..425188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100106g1gene755Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna789rna789-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29866.1cds789Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna789 ID=rna789|Name=rna789|organism=Nannochloropsis gaditana|type=mRNA|length=933bp
ATGGCGGATGATGAAGACGAAATCTTGCCCCAGGTCTTGGACGTGGGAGG
GGATTCTGAACTTTTTGGACTGGACTTGCATCCTACGCAAGACATGTTAG
CGCTGGGCCTTGTGGATGGCAGGGCTTTGCTGTATTCTTATCTGGAGAAA
GGGGCAGTTTGCGCTTTGCACGCCGAAACGGGCGCACACAAAGAAGCTTG
CCGTGCTGTCTTGTTTGAACCTTCTCTTGGTGTTCAAGTTTTTACTGCCT
CCTCGGACAAGAGCATACGTGCGCTAGACATTGAGACGGGCAAGAAGGAC
TGGGACGTGGACGGTGCCCATCCTGACGCGGTCAACTGCCTTACTTATTG
GGGAGAAGGGAGACTCTTAGTATCCGGTGACGATGTAGGCGGAGTGAAGC
TGTGGGATTGCCGACAATCGAGGAAAGCCGTGGTCTCGGTCCACAAGCAC
GAGGATTTCATTGCCGACCTCCTGGTCCACGAGGGCACCTTGTTCGCGGC
CAGCGGGGACAACACTCTATCAACATATGATCTGAGGCAGCGAAAGCTGG
CAGCCCGCACCATGGACCAGGAGGATGAGCTCTTGAGCCTTTCTGTCCTG
AAGCACGGCCGGAAGGTGGTGGCGGGGACCCAAAGCGGGGTCTTGCTCAT
CTATTCCTGGGGCGAGTGGCTGAACAGCTCGGATCGTTTCGTAGGCCACC
CGGAGACGGTGGAGGCCTTGGTGAAGGTGGACGAGGAGACCTTGCTGACG
GGCTCGAGCGACGGCCTGATCCGCCTGTGCTCGGTGCTGCCCAACAGGTT
GCTGGGGGTGGTAGGCACCCACGATGCCTTCCCCGTGGAGGGCATGCGGC
TGTCGCGAGACGGCGAGGTGCTCGTCTCGGTGGCGCATGACAGTTGTGTC
AGGTTTTGGGACCTGAGTTCGGGAAGACAGTGA
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protein sequence of rna789

>rna789-protein ID=rna789-protein|Name=rna789|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MGLVVTARQDRAFSHFLCPLLSLALAVHIVDQRSSFPFNLPPSLRKVPLN
SLRPSSLPNSLPPSLPLVPLQERTMPVFPQFLAPQVHHLIHFVKLESGAA
QAQGTEKWGTSKLQTSDDFLHA
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mRNA from alignment at CM002456.1:424061..425188+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna789 ID=rna789|Name=rna789|organism=Nannochloropsis gaditana|type=mRNA|length=1128bp|location=Sequence derived from alignment at CM002456.1:424061..425188+ (Nannochloropsis gaditana)
gaagaggaggaagaggaggaagaggaagccagTAGCAGCAGCGAGGAGTC
AACAAGTGGGcatgaaaggagagggagaaaggacaaaTCGGTGCCCAAGA
GATTGCGGATGACGCCCGCCGAGAGCTTCTTCAAGGATCTGTGAGGGCGT
GGCGAACCGGGGCTTCTGTGTCGGTGCGGGACTCGTGGCCTCtaaaggga
agggcaggtggggagagggaagttCTGAGACGCCACCCCAATCAGCGGGC
AGTAGGGTCGTGAGGAACATTtatcccctccttgatcccTGGGGGGACGC
TTGCACTCTTGGAAGCAGAACGACATAGAGCATTGTACAGCGGAGAGACG
CAGGCATGGGCTTGGTTGTAACGGCGCGTCAGGATCGAGCATTCTCGCAC
TTTTTATGCCCGCTTCTTTCTTTGGCCCTAGCCGTCCATATCGTTGATCA
AAgatcctctttccccttcaaccTGCCCCCGTCGCTGCGCAAAGTCCCTC
TCaactccctccgcccttcctccctcccgaattccctccctccctccctc
cctcttgtcccccTGCAGGAGCGGACAATGCCCGTCTTTCCTCAGTTTCT
CGCACCACAAGTGCACCATCTCATTCACTTCGTCAAACTCGAGTCCGGTG
CTGCTCAAGCGCAGGGAACGGAGAAGTGGGGCACCTCCAAGTTGCAGACC
TCTGACGATTTCCTGCATGCCTGAAagaagggcaggaaagggaggagata
gtACACGATACTCTAAAACGTAAAACATAGAGTGCGATGCTATTaaaaag
caaggaaaagaagagactTGAGCCAGAATAGAATCGACGGCACTGGATCG
AAACGTACCCTCGTAGGTGAGAAGATTCTCGGATAAGTCCAGGCACCGCA
GCCGTCGGAAATATCGAGCCTCGAGTACAACCGCCACGCCTGTGAAGGCC
TCCGTCTCTAAACATGCCTCCCGCAAATCCAGATCCTGCAGCCAGGGGCA
GCTTCCTTGCTTGAGAGCCTGGAAGAAGGGCTTCGTGTCCTTGTCCGTCA
GGGGGCACCCCCCCAGGGAGAGGCGTTTGAGCTTCCGACACGCCCCGTGC
CTCCAAGCGTTGACCAAGCCCAGacaca
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Coding sequence (CDS) from alignment at CM002456.1:424061..425188+

>rna789 ID=rna789|Name=rna789|organism=Nannochloropsis gaditana|type=CDS|length=369bp|location=Sequence derived from alignment at CM002456.1:424061..425188+ (Nannochloropsis gaditana)
ATGGGCTTGGTTGTAACGGCGCGTCAGGATCGAGCATTCTCGCACTTTTT
ATGCCCGCTTCTTTCTTTGGCCCTAGCCGTCCATATCGTTGATCAAAgat
cctctttccccttcaaccTGCCCCCGTCGCTGCGCAAAGTCCCTCTCaac
tccctccgcccttcctccctcccgaattccctccctccctccctccctct
tgtcccccTGCAGGAGCGGACAATGCCCGTCTTTCCTCAGTTTCTCGCAC
CACAAGTGCACCATCTCATTCACTTCGTCAAACTCGAGTCCGGTGCTGCT
CAAGCGCAGGGAACGGAGAAGTGGGGCACCTCCAAGTTGCAGACCTCTGA
CGATTTCCTGCATGCCTGA
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Synonyms
Publications