rna7888, rna7888 (mRNA) Nannochloropsis gaditana

Overview
Namerna7888
Unique Namerna7888
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1059
Alignment locationKK037247.1:25455..26401 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100178g10.3210.mrna
Orig protein idgnl|cribi|Naga_100178g10.3210
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037247.1supercontigKK037247.1:25455..26401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100178g10gene7641Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7888rna7888-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22805.1cds7866Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7888 ID=rna7888|Name=rna7888|organism=Nannochloropsis gaditana|type=mRNA|length=1059bp
TCGATGTGAAGCAGGAGCCGCGCTCTTGAAGCGTGTCCGGGATCATCGCC
GCGTGAAACACAGGCAGACAGTGCCTGCCTCGAACGTATGGCTTCATATA
AGGCACACAAGGAGTTTAATGCTGTCAGAGATTGATTAGCAGCCTTGTCG
GTTTCGGCCCCATAGGCACATTAAAAGCTCATGCACTTGCTTCGAGACAA
GCGGAGAGGGAGGTTTTCTCGAAGCGTCGTCTCTGAGAGACACGCGGAGC
GAGATAAGAAAAAGCCGTCCACAGCAACGCAAGGAAAATCGTGGAAAGGA
TGTGCTGTTTCGAGTAAGAGTAAAAAAGGGTGTTTCTGCCCCTTGGCAAG
CTCATCGAGCACTGCACAGGGCCCCCTTTCCCGCCGAGTCCTTGTGCCCT
CCCTGCGCCCGGGCTACCTTATCACCTTACTTGCCGTCGATTTTCTCCTG
AAAGGCAATTTACCTTGCGCTGACGCCTTTCTGCCCCGCGTCCACTCTCA
AGCTCGTCTCTGGGCACGATGCACCCGCTCAGTCCCTTGCCTGACTCCGC
TTCAGCCGCGGTCCCCGTCCTCCCCCGGGGCTCAGATTGCTCCCAGCACG
GACGGCATCGACCCCACATTTCCCGCTCCACCTCAAGTCTTTTCCACTCC
GGACGCATGCCTGTCGCCCTCCCCGGTCATCCCGGTCCGTCGCGCGCCTG
TGAACCTGACCACACCCTGCGCACTCACCCTCGCCTTCCCTGATGTGGAG
AGGAGGAGCACCAGGGAGGGGACTCCGGGCTACCCGGAGGCTTCCAAAAG
ACACCAAGTACCCCCAGCCCATATCTCGCAGGCAAACTTTCTCTCGCGCT
GCCTCCCTCCTACCCCTGCGCCCACCCTCCTTCCCTCCTTCCCTCCCTCC
CTCCCTTGCTTCCTCGACCTTCATCTCCTGCCCCCGCGGCACTTGGGATA
CGTACTCAAGGAGCTAAGCGCTCCGGGAAGAAGAAGGCGGGAAGGGGGGG
GGGTTGACGGGAAGGAGGGAGTTCTGGAGGCCGTATGCGATGCAGTGGCG
CAGAGCCTG
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protein sequence of rna7888

>rna7888-protein ID=rna7888-protein|Name=rna7888|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MKRGAQRVFQPAQTCVSRGDDPGHASRARLLLHIDVVLQKPQRLTAQVRH
DLHHKPVFIGQNYGYMSSYFPKGSFVDLAVMGSVPRFSFLPVRSSGKAFN
LVSIAHHYMALKLNNPSIAAQ
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mRNA from alignment at KK037247.1:25455..26401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7888 ID=rna7888|Name=rna7888|organism=Nannochloropsis gaditana|type=mRNA|length=947bp|location=Sequence derived from alignment at KK037247.1:25455..26401+ (Nannochloropsis gaditana)
AGACGGCGATACCAAAGGCTCTCTTTGTCCAAACACGGTTGACTCTTGGC
TTCCCGCAGCCCCGAGTGCTAGGAGGGTGAGGACTGACAGTAAAAGTCTT
GTAGTCTTATAAATGCCTTTACAATGAAAAGAGGGGCACAAAGGGTGTTC
CAGCCCGCCCAAACCTGTGTTTCACGCGGCGATGATCCCGGACACGCTTC
AAGAGCGCGGCTCCTGCTTCACATCGATGTCGTGCTTCAAAAGCCACAAC
GACTCACCGCACAGGTCCGACATGACCTGCATCATAAGCCAGTATTTATC
GGCCAAAATTATGGGTACATGAGCTCCTATTTTCCGAAAGGATCTTTTGT
CGACCTTGCCGTCATGGGTTCGGTAcctcgcttttccttccttcctgtcc
gtTCCAGTGGCAAAGCATTTAATCTCGTTTCCATTGCTCATCATTACATG
GCGTTGAAACTAAACAATCCTTCTATCGCAGCGCAGTAGATGAGATTAGA
AAGCACCACGGCGAGGACACAAAGTGCTTGGACACACATGAAGTCATACC
GGGCTCGATAAGGCCTACTTTCCCAGCTATAACCTCACCTCCCCAGACCC
CTGGTACTTGCAAGAGGCAGAAATACTCATCACAACAATGCCATCAGAAA
CGTATGGGCGACACGTTAGGAAGATTGAAATAAATGCCAATGTGAATTGA
AAAATGCATATTAAGGATTAGGGTTAGTTTAGGGTTGGTACATATTTTAT
GTGCTGTCGTCCAGAGATCCATTCACAAGGTGTTCAACTTTGTCTTTAAA
GAAAATAACGTAAAATATTGAAATGGAGTTCCTTAGGACTGTTTCCTATA
GCTTTCTCCAGCAAAATAAAACTCCATTATTATGTTATAGAATGACACGC
GTACTTGCCCAATAAAGAAAAGATTTCAATAAAAACCAAAGCAGATT
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Coding sequence (CDS) from alignment at KK037247.1:25455..26401+

>rna7888 ID=rna7888|Name=rna7888|organism=Nannochloropsis gaditana|type=CDS|length=366bp|location=Sequence derived from alignment at KK037247.1:25455..26401+ (Nannochloropsis gaditana)
ATGAAAAGAGGGGCACAAAGGGTGTTCCAGCCCGCCCAAACCTGTGTTTC
ACGCGGCGATGATCCCGGACACGCTTCAAGAGCGCGGCTCCTGCTTCACA
TCGATGTCGTGCTTCAAAAGCCACAACGACTCACCGCACAGGTCCGACAT
GACCTGCATCATAAGCCAGTATTTATCGGCCAAAATTATGGGTACATGAG
CTCCTATTTTCCGAAAGGATCTTTTGTCGACCTTGCCGTCATGGGTTCGG
TAcctcgcttttccttccttcctgtccgtTCCAGTGGCAAAGCATTTAAT
CTCGTTTCCATTGCTCATCATTACATGGCGTTGAAACTAAACAATCCTTC
TATCGCAGCGCAGTAG
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Synonyms
Publications