rna7856, rna7856 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7856
Unique Name	rna7856
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	593
Alignment location	CM002474.1:135029..136145 -

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Properties


Property Name	Value
Product	ankyrin repeat protein
Orig transcript id	gnl\|cribi\|Naga_100295g6.2579.mrna
Orig protein id	gnl\|cribi\|Naga_100295g6.2579
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:135029..136145 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100295g6	gene7609	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22837.1	cds7834	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7856	rna7856-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:135029..136145-
coding sequence from alignment at CM002474.1:135029..136145-

mRNA sequence

>rna7856 ID=rna7856|Name=rna7856|organism=Nannochloropsis gaditana|type=mRNA|length=593bp
GATGGCCCTCTGACACGAGCGACCCAAGCTTCTGACCTGACACGAACGTT
GCCTCCATCATGCGATCGACCTCATTGTCCCTAGCTCCCAGACTCATCCA
TTTCCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCAGCAAGCCATGTTGGA
GCCCTGCCGCCTCGACCATCTCCTGAAGGGGTGGTTCTGCCATCTCCTGA
CCCGCAGCCCTGGCGCCCCTCAAGCCCTGCGCAACCCGTCCTCACCTGTC
GTAGAGTCGATCCTCCCGCGCTTAAGCACTGCCTCCCCTCACCTCCTTGC
CCGTGCCTGCACTGAGGGCCAAGCGGCTTGGAAGATCCTCGGGGGCCGGA
AAGGGAAGGCCTTGCCGACTCTGGAGGTGCATGCAGCTGGCAGCCTTTGT
CTTGGGGCCTCGCTTTCCTCCTCCTCGCTCTGCCCCTCCACCTCAACCGC
CTCCTCCACCGACAGATTGAATGACCCCGCACTTGGCCGCGATGGCAGCC
CTGCGAGCATGGGCGGCGATGGGGTGAAGAACAAGGGAACAGGCAGGTAC
TGGGGCTCGGAGAGGGACTCTCGAAAAACGCTCGCGCCCCCTT

protein sequence of rna7856

>rna7856-protein ID=rna7856-protein|Name=rna7856|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MHQPSPDGSNLLPVPLLLHSAAQWGLEKIVLCLLESHSEAIDVTDEHGWT
PLMLAASRGHSSVVGCLLDRGADVHLRDLDGMTALTHAAAGRLGNAKVVQ
LLLEKGGADPGAACKWGSTPLMEAAALGFEGRMQALLTRRRGANQGRGGK
SETKKTWSGGSRVSIDRQDGKGATALFKVRARGGTRPEREI

mRNA from alignment at CM002474.1:135029..136145-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7856 ID=rna7856|Name=rna7856|organism=Nannochloropsis gaditana|type=mRNA|length=1117bp|location=Sequence derived from alignment at CM002474.1:135029..136145- (Nannochloropsis gaditana)
GCCCAAGGCGGCTATAAACATGTAATTGACTAACGAGAGAGCCCTCAAAA
AACCACTTTAATTCGCAAAGACCTTCTGACAGGCACTCACGCGGGTATTA
CTGTGGCCACGCACCTCAACCACAGCCGTGGCAAACCAAAGGACGCATTG
TGGCATACTGCCAAGCTTACCGGGATAGCTGACGTAATTTTGCGTACATC
GTCAGAAACAGAAAAGGCCGTATCGCCGTGCCACAGGCATAGCTGCCTGA
TAAAGATTGTGCTCCGGAAGAAAGTAGATGCATCAGCCTTCACCAGACGG
TAGTAACCTGCTCCCTGTGCCTCTTCTTCTTCATAGTGCGGCGCAATGGG
GGCTTGAAAAGATAGTCCTATGTCTATTGGAATCCCATTCCGAGGCCATC
GATGTGACGGACGAGCACGGATGGACGCCCCTGATGCTGGCGGCCTCCCG
AGGACATAGCTCCGTGGTGGGGTGCCTGCTCGACCGCGGCGCCGACGTCC
ACCTGCGAGACCTGGACGGGATGACAGCCTTGACACATGCCGCTGCCGGG
CGACTGGGCAATGCCAAGGTGGTACAGCTATTGCTGGAAAAAGGCGGGGC
GGACCCTGGGGCGGCCTGTAAGTGGGGGTCGACCCCGCTCATGGAGGCGG
CGGCCTTGGGCTTCGAGGGGCGCATGCAGGCCCTCCTCACGCGCAGGAGG
GGAGCAAATCAAGGGCGTGGGGGGAAAAGCGAGACGAAGAAAACATGGAG
TGGCGGAAGTCGTGTGAGTATTGACCGCCAGGATGGGAAAGGCGCGACGG
CTTTGTTTAAGGTGAGGGCGAGGGGAGGGACGAGGCCCGAGAGAGAGATA
TGAAAAAGAAAGTGAAGCAATCCGTACAAACTCCTTGTAGCACAATGTTG
GGGTGTGATATCCAGGCACATGGACAATCATGTTGATAAAATGCAATGCC
CTCCAGGCCTGCCTGTACGGACGGGTGGGGGCCGTTAAGCTCCTCCTCGG
CGCAGGCGCGGACCCCAGGATCCCCACCCACGACGGCCTCTCGCCCATGC
TCGCCACCCTGTCCTGCCCACGCGGCAGGGGACTACAAATAGCGCGCTTG
CTCGAGGTGGGTCGGAC

Coding sequence (CDS) from alignment at CM002474.1:135029..136145-

>rna7856 ID=rna7856|Name=rna7856|organism=Nannochloropsis gaditana|type=CDS|length=576bp|location=Sequence derived from alignment at CM002474.1:135029..136145- (Nannochloropsis gaditana)
ATGCATCAGCCTTCACCAGACGGTAGTAACCTGCTCCCTGTGCCTCTTCT
TCTTCATAGTGCGGCGCAATGGGGGCTTGAAAAGATAGTCCTATGTCTAT
TGGAATCCCATTCCGAGGCCATCGATGTGACGGACGAGCACGGATGGACG
CCCCTGATGCTGGCGGCCTCCCGAGGACATAGCTCCGTGGTGGGGTGCCT
GCTCGACCGCGGCGCCGACGTCCACCTGCGAGACCTGGACGGGATGACAG
CCTTGACACATGCCGCTGCCGGGCGACTGGGCAATGCCAAGGTGGTACAG
CTATTGCTGGAAAAAGGCGGGGCGGACCCTGGGGCGGCCTGTAAGTGGGG
GTCGACCCCGCTCATGGAGGCGGCGGCCTTGGGCTTCGAGGGGCGCATGC
AGGCCCTCCTCACGCGCAGGAGGGGAGCAAATCAAGGGCGTGGGGGGAAA
AGCGAGACGAAGAAAACATGGAGTGGCGGAAGTCGTGTGAGTATTGACCG
CCAGGATGGGAAAGGCGCGACGGCTTTGTTTAAGGTGAGGGCGAGGGGAG
GGACGAGGCCCGAGAGAGAGATATGA

Synonyms

Publications