rna7854, rna7854 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7854
Unique Name	rna7854
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1834
Alignment location	CM002474.1:133452..134123 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100293g1.8351.mrna
Orig protein id	gnl\|cribi\|Naga_100293g1.8351
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:133452..134123 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100293g1	gene7607	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22845.1	cds7832	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7854	rna7854-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:133452..134123-
coding sequence from alignment at CM002474.1:133452..134123-

mRNA sequence

>rna7854 ID=rna7854|Name=rna7854|organism=Nannochloropsis gaditana|type=mRNA|length=1834bp
AATGCTGTCTGTCCATTTTTGCTGCATTATGTTCCCATCGAAAACTACCA
CGCACTTCTAAGGAAGCAGCGACGACCGAGAACTTCAATCTCCCGGCCTA
AGCATTGCACCACTTATGACAACGAGCAAAGCTGTTGCTGCCGCTGCTGG
CTCCGTTGCTAGCACACGGGATCATGGCATTCTACTTCGTTCTCTTTATC
GCGCGATGAGCAGACATGGCAAATGGTTTGACGCCACGCCAATGGCTAAA
GCGGTTATTCCATTCCCTTTACCTTTTTCTTACCAAGTGCTTCTCGGTGG
TCATAACCGTGATTTCTACGGACAAAATCTCTCCGTGCATGAGGCCATTC
GTTGTGGTTTCGGCCCTGCCGCGTCTTCGCACGCGCAAACAGAGGTGAGC
GAGGAGCTACGTATCGACATGACGCTGCAACTGGCGAGGCAATTGGCAGG
ATGGCGGCACTTGCTCTCCTCCTCCTCTTCTTCCTTCTCTGCGCCTCTAA
TATCGCAAGCAACCAGGCCCTTGGACTCTCTGAGCTCCTCAGCCGCGACC
GCAGGCACCGAGAGTGAGACGGGGGGTGTCTTTCACCCGCTGACAGTGGA
TGTGGCGCCCTACACACGAGAGCTGATTCCCGCATTTTTTTTCACGTATT
TTTCAACAGCATCTAGTCTTTCCCCTCTTGGGGCCCCCTCCTCCTCTTCC
TCCTCTTCTCCCTCCTCCTCGTCGTCCTCCTCCTCGTCAACCTCCAGTAC
CACCTCCACCTCTTCTTTCTCCTCCCTCCCTTCCTCCCCTGTGACCTATC
AAGAAGTCTATGGCAATGCCCGCAAACATAACTCACAGCTACATGCTGCG
CTAGAGAAGCTCGAAGAAGCAGAGCGGCTCTTGGAGGCGGGAGGAAGGGA
GGGAGGGGTGATAGATCGGGAAAGAATCAAGAGCCTGTACCAGATGTCAC
TCGCTCTTTATCCAACGGCCGATGCACGGACGTACCTCGCGTACCTGCTG
TCCTATGAGGGGGCTTTGAAAGAGGCGAAAGAGGAGCTTAAGGAGGCAAT
GAAGCAGGACGCAGAATTTGGCAATGCCTGGAACGATTTGGGCTTGTACC
TGTGGCAGGAGGGGCGGCGCGAAGAGGCTTTAAAGGTGTTGGCAGAGGCA
AAGAAGAAGCGCCGCTATCAAGTGCGATACAAGCCTTACCTGAACAGCGG
GCACATATTCCTGGAACTCGGTCAGCCCACCTCCGCCCTTGTCGAGTATC
TCCACGCGCTCCATCACGCGGGGCCCGACCGGGGGCGAGAGATCCGAGCC
GTTATTTGCGACATGGCACGGGTGCTGTCCCAGGAGGAGTTGAGGGAGGG
AGGGGGTTAGGTGAGGGAGGGGCGGAGGAAGAGGGAAGGGGGCGGGAAAG
CGACGCGGGGGGGAAGAGGATGAGAGGAAAGGCCGAGGATATTCAGATTT
GAAGCATGCAGAGCATGGGCGTCGGGAGAGTGAAAGAGAGACAGCAAGGC
GAGTTTGGCGTGTCGGTGGGCTACAGTCTCAATTCTTTCGCCGGGCGCTT
ATTTATTATTAGATCACTCGTTCATTCTGTTCTCGCTTATTAATGAAATA
CTCGATTTCAATGCCAGTTCAACACTCCATCACACAAAAGCTAGAAAGTA
TACAAACAAGCTCACGCATCATTGTGGCCTCACACATCACTCGGGGCATC
CATTGATCGCATGTCTTCGCCACCCCAGCCACCCCTCCTCTCCTTGTCGA
CGCGTCGCCCAAGACGTCTCACGACCGAGACAAGCTCTGCCGATAAAATT
TCACAATTTGTCGCTCGCTGCACTCGCTCTTTCC

protein sequence of rna7854

>rna7854-protein ID=rna7854-protein|Name=rna7854|organism=Nannochloropsis gaditana|type=polypeptide|length=107bp
MRGIRGDRVSSRCASGWTGRERENRGAWREVTKWNFGEEVGRRTGGRKRG
GNGAGGGKERVQRATNCEILSAELVSVVRRLGRRVDKERRGGWGGEDMRS
MDAPSDV

mRNA from alignment at CM002474.1:133452..134123-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7854 ID=rna7854|Name=rna7854|organism=Nannochloropsis gaditana|type=mRNA|length=672bp|location=Sequence derived from alignment at CM002474.1:133452..134123- (Nannochloropsis gaditana)
AGCGTGACACGGAGGCCTTCACGACAGGGGACGAGGAGGAGGAGGAGAAG
GAGGGAGCATGGGAGGAGGAGGGTGATGAGGGGACTGAGAGTGTAACGGC
CGAGAGGGAGGTGGTTGAGGTGCAGAATGAGGAAGAGGAATGGTGAAGGG
AAGAAGGGGGGATCCAGGTAGTATAGGCGATGCGTGGTATAAGAGGAGAT
CGGGTGTCCTCGAGATGTGCATCAGGATGGACAGGAAGAGAGAGGGAAAA
CAGGGGAGCATGGAGGGAGGTTACGAAGTGGAATTTCGGTGAAGAGGTGG
GAAGAAGGACAGGGGGGCGCAAAAGAGGGGGGAATGGAGCAGGGGGGGGG
AAAGAGCGAGTGCAGCGAGCGACAAATTGTGAAATTTTATCGGCAGAGCT
TGTCTCGGTCGTGAGACGTCTTGGGCGACGCGTCGACAAGGAGAGGAGGG
GTGGCTGGGGTGGCGAAGACATGCGATCAATGGATGCCCCGAGTGATGTG
TGAGGCCACAATGATGCGTGAGCTTGTTTGTATACTTTCTAGCTTTTGTG
TGATGGAGTGTTGAACTGGCATTGAAATCGAGTATTTCATTAATAAGCGA
GAACAGAATGAACGAGTGATCTAATAATAAATAAGCGCCCGGCGAAAGAA
TTGAGACTGTAGCCCACCGACA

Coding sequence (CDS) from alignment at CM002474.1:133452..134123-

>rna7854 ID=rna7854|Name=rna7854|organism=Nannochloropsis gaditana|type=CDS|length=324bp|location=Sequence derived from alignment at CM002474.1:133452..134123- (Nannochloropsis gaditana)
ATGCGTGGTATAAGAGGAGATCGGGTGTCCTCGAGATGTGCATCAGGATG
GACAGGAAGAGAGAGGGAAAACAGGGGAGCATGGAGGGAGGTTACGAAGT
GGAATTTCGGTGAAGAGGTGGGAAGAAGGACAGGGGGGCGCAAAAGAGGG
GGGAATGGAGCAGGGGGGGGGAAAGAGCGAGTGCAGCGAGCGACAAATTG
TGAAATTTTATCGGCAGAGCTTGTCTCGGTCGTGAGACGTCTTGGGCGAC
GCGTCGACAAGGAGAGGAGGGGTGGCTGGGGTGGCGAAGACATGCGATCA
ATGGATGCCCCGAGTGATGTGTGA

Synonyms

Publications