rna7832, rna7832 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7832
Unique Name	rna7832
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1574
Alignment location	CM002474.1:73169..75379 -

Link to JBrowse

Properties


Property Name	Value
Product	MORN repeat-containing protein
Orig transcript id	gnl\|cribi\|Naga_100341g6.8451.mrna
Orig protein id	gnl\|cribi\|Naga_100341g6.8451
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:73169..75379 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100341g6	gene7588	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22865.1	cds7811	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7832	rna7832-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:73169..75379-
coding sequence from alignment at CM002474.1:73169..75379-

mRNA sequence

>rna7832 ID=rna7832|Name=rna7832|organism=Nannochloropsis gaditana|type=mRNA|length=1574bp
TCCCCAGTCCCCCCACTCCGTCCACCCCCCCTTCGTCGCTTATTGTTGCG
CAAATAATGCCAAGTTTTGCCGGCTTGAGTTACGAAAATTTCTCTCTCCA
CGCCAAATCGTGCCTCAAGGCCTTTCACTTCCAATTGTTTTCGCAAGACT
GGCACGCGGCTCACCAATCTTTGAGAATCATCTTTCCTCAGCGGCAACCC
GATAGCAAGGCGGGAAAAAAATGCCAGAACGAGGAGCCCAACGACCACAA
CCAACAACTGCGGAAAGAGGGGAATTGTAAGCAACAGCTACTCTGCATCT
GGCGCAACATGGCTCATCTCTCTTTACGGAATCGTCGCGTTGAAGTCGCC
GAGCACTGTTTAAGCTACATGGGCCACATCCGAGGTGTGCATGCCGTTCG
AGAAGCTGTGTCTAGCCCCTCTCTTTACCCCTCCCTTCCTTCCTTGACCT
CCTCCACGTGCTCTACGGACATTCCCCTTGGGATGGTTGCCATCCAGCTT
GGCCTGCTTCAGGAAGCAGCTGCTCTTTACATCCGTGCAAAACGTTTCGA
TCTCCTCAATCGCATGTACCAGGCGGCAGGAAAATGGGAGAAGGCTTTAC
AGGTAGCTGAGAAAGATGATAGGTTACATCTTCGCACAACCCACTTTCAG
TACGCCCGGCGCTTGGAAAGGATGAGTGAATGGGATAAGGCGATCTTTCA
CTATGAGAAGGCAGGAGCACAGGCGCGGGAGGTGCCAAGGATGTTGCACA
AAGCAGGAAAAATCGAAGATTTGGAAAAATACCTGTCGAGACAGAAGTCG
ACAGTAGCAGACCGAGAATCTGGAGACGCAAAGATGCTTTGGCGTTGGTG
GGGAAGGTATTGTGAGTCAAAGAGAGACGTAAAAGCTGCAAAGGAGGCGT
ACCGGAAGGCGGCAGACCTGGTGGCTCTGGTGAGACTCGCCTGCGTTGCC
CAAGATGTGGGTGCTGCAGAAGCGTTGTTGGATGACAAAGATGCCGGGGC
ATTACATCAAGGTGAAATATCCTGGAGACAGGCCTCCAACCACGCAATGA
AAGCCGCGGCTTCCTATCACCTCGCCCGTCACTATGAGGGAGCCCTCTAC
GATGTTCTTCCCGCTCTCACCCACTACGCGCGTGCAGGATGTTTCAAGCA
CTGTATACGTTTAGCCAAGGCGCATGAGCTCGACAATGACGTCATGCAAT
ATGCCTTACAAAGCGGGCAGGCCGACCTAATGCAAGATAGCGCCCAATAT
TTCCTGAAACTGGACCAGAGTGAAAGAGCACAGGAGTTGATAGGCAAGGC
CAGAAAAATGCGAGAATCTTGACCCAGGGAGATGTTGTGAATTTAATTAA
AAAAGGAAAGTAGTTCAAAACAAAGAAGGAAACGATAAATGCCGGATTAA
GGGAAGTTGACCCAATCGTCATGACACTCCGCGGCATACTATGTTCTGCC
AGTCTTAGTGTTATTAAGCCTACTTTTATTGCTCATCGCATTCCTTACCA
AGAAAAGAATTTACGCATGTTTATAGTCGCCCAGAGAGCCATACAGACAA
AGTACAAACGTCAAAAATCAAACT

protein sequence of rna7832

>rna7832-protein ID=rna7832-protein|Name=rna7832|organism=Nannochloropsis gaditana|type=polypeptide|length=736bp
MANVTNKNAMYMGELIDNKRDGQGVCRWEDGNVYDGEWREDKRHGRGMFM
IGETGDEYVGEWKHGKADGYGVMTWVLGTRYEGLWKENRRNGFGTFYYLD
GVIYRGDWVENKRHGKGTLIFPDGSLFIGEFKDDNVAGGEGRYYAVAFAL
DRTFPESKAEEIPALAMKEVNAKLREIQAKSSHDQNPPASSYQSPHSSPW
APNPMQNSPAEAAGHPSPHVYLPPPPPPSQHIANPNVLGFNNNYNNNNIN
NIRNSSSINNSNNAGRAAPGNVFGSSPPNQVLGLGMSPTGAPQGVFQIPT
PSSSAIFHTNSPLVHATNAGSGAASNSSDAQYCSPYPTRQALQQHHGPVQ
PQPPYARPQQSQSPPPSISRPPHPQQSQPAPPPPRQANPPHPRRKAPGFA
RLKEIGLERHLLRDLLVATLGESREVDRYLGLLRPRGLDNLLSLKLRITS
TEELKQAGVHRVIHARKLWKALQEVDASTLLPPPTSRPQLHHFLFTLFEF
WSLDDPLLTTYVRLFNDRLGLNLHEELILLTEKDLRRLPMLDGHRIALLH
AREEMLELKKQQLFEKQRKRQEQLQQRQHEQREQQLQQPRIRSGPPPPAL
PRSRPGGSKAPTPPRPQPRPAGRSSSPSSPPPRPSRPVHPSQPQRQQTPP
PPNHPQRMEEPPRQRQHHRHAQLPDHHHSSPSQQRYKPPMPQKRPIHPNL
PPESPKSPNPVVTFAYAGRGRRGSPHLYFGDSDERR

mRNA from alignment at CM002474.1:73169..75379-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7832 ID=rna7832|Name=rna7832|organism=Nannochloropsis gaditana|type=mRNA|length=2211bp|location=Sequence derived from alignment at CM002474.1:73169..75379- (Nannochloropsis gaditana)
ATGGCAAACGTGACAAATAAAAATGCAATGTACATGGGAGAGCTCATCGA
TAATAAGCGGGATGGGCAGGGAGTGTGTCGATGGGAAGATGGGAATGTAT
ACGATGGCGAATGGCGTGAGGATAAGCGTCACGGTCGAGGCATGTTCATG
ATCGGTGAGACAGGGGACGAATACGTCGGCGAATGGAAACACGGGAAAGC
GGATGGATACGGAGTGATGACCTGGGTATTGGGTACACGGTACGAGGGCT
TGTGGAAGGAAAACCGTCGAAATGGCTTTGGGACGTTCTATTACTTGGAC
GGCGTGATCTATCGGGGCGACTGGGTAGAAAACAAACGTCACGGGAAAGG
TACACTTATTTTTCCGGACGGGAGTCTGTTTATCGGCGAGTTTAAGGACG
ACAATGTGGCTGGGGGGGAAGGGCGCTACTACGCCGTCGCCTTTGCGCTG
GATCGCACCTTTCCGGAGAGCAAAGCAGAAGAAATTCCCGCCCTGGCCAT
GAAGGAAGTCAATGCAAAGCTACGAGAAATACAGGCTAAATCGTCGCACG
ATCAAAATCCCCCTGCCTCTTCATACCAATCGCCACATAGTAGCCCTTGG
GCTCCTAACCCCATGCAGAACTCTCCAGCGGAAGCTGCCGGACACCCCTC
TCCCCACGTATACCTTCCTCCTCCGCCACCACCTTCCCAGCATATTGCTA
ATCCTAATGTCTTGGGGTTCAACAACAACTATAACAACAATAATATCAAC
AATATCAGGAACAGCAGCAGCATCAACAATAGCAACAACGCTGGGAGGGC
AGCACCTGGAAATGTTTTTGGGAGCTCCCCCCCGAATCAAGTGCTCGGCT
TAGGGATGAGCCCAACCGGGGCTCCTCAGGGCGTCTTTCAGATTCCTACC
CCGAGCAGCAGTGCAATTTTCCACACAAACAGTCCTTTGGTCCACGCAAC
AAATGCGGGAAGCGGCGCCGCCAGCAACAGCAGCGATGCCCAATATTGTT
CTCCGTACCCAACGCGGCAAGCGCTGCAGCAGCACCATGGACCGGTGCAA
CCGCAGCCTCCTTATGCACGGCCGCAGCAGTCACAGTCGCCACCACCCTC
AATATCCCGGCCGCCACACCCACAGCAATCGCAGCCGGCGCCGCCCCCAC
CACGCCAAGCGAACCCCCCTCACCCCCGTCGGAAAGCCCCTGGTTTTGCT
CGCCTGAAGGAGATCGGCTTGGAGCGGCATTTGCTCCGAGATCTTCTCGT
GGCAACCTTGGGAGAAAGCCGGGAGGTCGATCGGTACCTTGGCCTCCTGC
GACCCAGAGGCCTGGATAATTTGTTGTCGCTCAAGCTGCGTATCACCTCC
ACAGAAGAGTTAAAACAAGCCGGCGTCCATCGGGTCATTCATGCCCGCAA
GTTGTGGAAGGCTTTGCAGGAGGTGGATGCCAGCACTCTTTTGCCCCCCC
CCACATCCCGCCCCCAGCTCCACCACTTCCTTTTTACCTTGTTCGAGTTT
TGGTCCCTGGACGACCCGTTGCTGACAACGTACGTACGGCTCTTCAATGA
CCGGCTTGGCCTGAACTTGCACGAGGAATTGATTCTTCTGACGGAAAAAG
ACTTGCGACGCTTACCCATGTTGGACGGACATCGGATTGCGCTCTTGCAC
GCCCGGGAAGAAATGCTCGAGCTGAAGAAGCAGCAGCTTTTCGAAAAGCA
ACGCAAGCGCCAGGAACAACTACAGCAGCGACAACACGAGCAAAGAGAGC
AACAACTCCAACAGCCACGTATACGATCCGGCCCCCCTCCTCCCGCCCTC
CCCCGGAGCCGGCCTGGAGGGTCCAAAGCCCCCACACCGCCCCGACCTCA
ACCCCGCCCGGCGGGGCGCTCGTCGTCTCCGTCATCCCCGCCTCCACGTC
CTTCCAGGCCGGTGCACCCATCGCAACCACAGCGACAACAAACCCCACCA
CCTCCCAACCACCCTCAAAGAATGGAAGAGCCACCACGACAACGTCAGCA
CCACCGTCACGCCCAGCTGCCAGACCACCATCATTCGTCGCCATCGCAGC
AGCGGTACAAGCCACCAATGCCTCAAAAACGACCAATACACCCTAATCTA
CCCCCAGAATCTCCAAAATCTCCCAATCCCGTTGTAACTTTCGCATATGC
TGGGAGAGGAAGGAGAGGATCACCACATCTCTACTTCGGAGACTCAGATG
AGCGGAGATGA

Coding sequence (CDS) from alignment at CM002474.1:73169..75379-

>rna7832 ID=rna7832|Name=rna7832|organism=Nannochloropsis gaditana|type=CDS|length=2211bp|location=Sequence derived from alignment at CM002474.1:73169..75379- (Nannochloropsis gaditana)
ATGGCAAACGTGACAAATAAAAATGCAATGTACATGGGAGAGCTCATCGA
TAATAAGCGGGATGGGCAGGGAGTGTGTCGATGGGAAGATGGGAATGTAT
ACGATGGCGAATGGCGTGAGGATAAGCGTCACGGTCGAGGCATGTTCATG
ATCGGTGAGACAGGGGACGAATACGTCGGCGAATGGAAACACGGGAAAGC
GGATGGATACGGAGTGATGACCTGGGTATTGGGTACACGGTACGAGGGCT
TGTGGAAGGAAAACCGTCGAAATGGCTTTGGGACGTTCTATTACTTGGAC
GGCGTGATCTATCGGGGCGACTGGGTAGAAAACAAACGTCACGGGAAAGG
TACACTTATTTTTCCGGACGGGAGTCTGTTTATCGGCGAGTTTAAGGACG
ACAATGTGGCTGGGGGGGAAGGGCGCTACTACGCCGTCGCCTTTGCGCTG
GATCGCACCTTTCCGGAGAGCAAAGCAGAAGAAATTCCCGCCCTGGCCAT
GAAGGAAGTCAATGCAAAGCTACGAGAAATACAGGCTAAATCGTCGCACG
ATCAAAATCCCCCTGCCTCTTCATACCAATCGCCACATAGTAGCCCTTGG
GCTCCTAACCCCATGCAGAACTCTCCAGCGGAAGCTGCCGGACACCCCTC
TCCCCACGTATACCTTCCTCCTCCGCCACCACCTTCCCAGCATATTGCTA
ATCCTAATGTCTTGGGGTTCAACAACAACTATAACAACAATAATATCAAC
AATATCAGGAACAGCAGCAGCATCAACAATAGCAACAACGCTGGGAGGGC
AGCACCTGGAAATGTTTTTGGGAGCTCCCCCCCGAATCAAGTGCTCGGCT
TAGGGATGAGCCCAACCGGGGCTCCTCAGGGCGTCTTTCAGATTCCTACC
CCGAGCAGCAGTGCAATTTTCCACACAAACAGTCCTTTGGTCCACGCAAC
AAATGCGGGAAGCGGCGCCGCCAGCAACAGCAGCGATGCCCAATATTGTT
CTCCGTACCCAACGCGGCAAGCGCTGCAGCAGCACCATGGACCGGTGCAA
CCGCAGCCTCCTTATGCACGGCCGCAGCAGTCACAGTCGCCACCACCCTC
AATATCCCGGCCGCCACACCCACAGCAATCGCAGCCGGCGCCGCCCCCAC
CACGCCAAGCGAACCCCCCTCACCCCCGTCGGAAAGCCCCTGGTTTTGCT
CGCCTGAAGGAGATCGGCTTGGAGCGGCATTTGCTCCGAGATCTTCTCGT
GGCAACCTTGGGAGAAAGCCGGGAGGTCGATCGGTACCTTGGCCTCCTGC
GACCCAGAGGCCTGGATAATTTGTTGTCGCTCAAGCTGCGTATCACCTCC
ACAGAAGAGTTAAAACAAGCCGGCGTCCATCGGGTCATTCATGCCCGCAA
GTTGTGGAAGGCTTTGCAGGAGGTGGATGCCAGCACTCTTTTGCCCCCCC
CCACATCCCGCCCCCAGCTCCACCACTTCCTTTTTACCTTGTTCGAGTTT
TGGTCCCTGGACGACCCGTTGCTGACAACGTACGTACGGCTCTTCAATGA
CCGGCTTGGCCTGAACTTGCACGAGGAATTGATTCTTCTGACGGAAAAAG
ACTTGCGACGCTTACCCATGTTGGACGGACATCGGATTGCGCTCTTGCAC
GCCCGGGAAGAAATGCTCGAGCTGAAGAAGCAGCAGCTTTTCGAAAAGCA
ACGCAAGCGCCAGGAACAACTACAGCAGCGACAACACGAGCAAAGAGAGC
AACAACTCCAACAGCCACGTATACGATCCGGCCCCCCTCCTCCCGCCCTC
CCCCGGAGCCGGCCTGGAGGGTCCAAAGCCCCCACACCGCCCCGACCTCA
ACCCCGCCCGGCGGGGCGCTCGTCGTCTCCGTCATCCCCGCCTCCACGTC
CTTCCAGGCCGGTGCACCCATCGCAACCACAGCGACAACAAACCCCACCA
CCTCCCAACCACCCTCAAAGAATGGAAGAGCCACCACGACAACGTCAGCA
CCACCGTCACGCCCAGCTGCCAGACCACCATCATTCGTCGCCATCGCAGC
AGCGGTACAAGCCACCAATGCCTCAAAAACGACCAATACACCCTAATCTA
CCCCCAGAATCTCCAAAATCTCCCAATCCCGTTGTAACTTTCGCATATGC
TGGGAGAGGAAGGAGAGGATCACCACATCTCTACTTCGGAGACTCAGATG
AGCGGAGATGA

Synonyms

Publications