rna7823, rna7823 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7823
Unique Name	rna7823
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1850
Alignment location	CM002474.1:54250..55445 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100931g2.4618.mrna
Orig protein id	gnl\|cribi\|Naga_100931g2.4618
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:54250..55445 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100931g2	gene7578	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7823	rna7823-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22872.1	cds7802	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:54250..55445-
coding sequence from alignment at CM002474.1:54250..55445-

mRNA sequence

>rna7823 ID=rna7823|Name=rna7823|organism=Nannochloropsis gaditana|type=mRNA|length=1850bp
CCTATCATTCTACCCGGGGCTTCCCGGCGTCCTCCTTCCCCCCTTTCCTC
CCGTACCGACTGACCTTCTCCGGAAAGCATTGCGAGACGAAGGTGGAAAT
GAGGGAGGACTTTCCTGCCCCTCGGTCTCCAAGGAGGAGAATGCGCACGG
TGTCTTTCATGCCCCCCTGGTGATGTAGGTAGAGCACACGGGGAGAAGCA
ATTAAGACCGGTCTCCACCCTGGCATCATGTTGTAAGCCGCCTCCGTCGA
AAAAACATACTCCTTTGGCGCATAATTACAATCACATCACACATTCCCTG
GGATTGTGACGGCCAAATGCTGAAAATGTCGTTGCTTCCACCAGGATCGA
GATCGCGGCGGGAATAGCTAGAAGCCCCGAGCCTGCTTCCTTGCCTCTTT
GAACACATCACCGAATGAGTACGCACCGGTCCATAACGCAAAGCACGCGG
GCTCCACGACGCAAAGTACGTGGGGGTTGACCTGTTCGTGCGCGTTTCCT
CAACATGTTGCCGCACCGTGTTCAAGAGAAGGACTCCGTGCATCTACAGG
GCTCGCCACCCCGCTTCAAGAAGCAGTACTAGCAGGAGCGAGCGCTCGAC
TCGATCGATACTCTCAGGTTTCGGTCACACAAATCGACGTGCCTTCACCC
ACAGCCACGTACTATCTCAGCCACATGGCCAGGTAGGACAATGTCTTTCT
TGCGGATACTGGACCATGACCTGGACGACCCGCTGTTCCTTCGTCTCTTC
GACTCTCTTGGCCTGAACTCCCATCAAGAAGTCGAGCTCATCCATGTCCT
GAAACGGATCACCACGCCGATGGAGACCTTGATAGCCCGAGGCCGGAGCA
GAGAGGCACTTGCCTTCTTGGAGAAACGACAGCAACAACGACAACAATTG
CAACGACAACAAAGACAACCGCCACAACCATTAGTAGAAGAAGAAGCACG
ACTATCGCCACAGACCTGTGTAGCGGCACCCTTTCCCGGGCCGGGACCGA
GTGTGTGGGGCACCGTGCAGGAAGCGGGGCAGGCCGCCGTTCCACGCCTT
CCCTCCTCCTCGCCCTGCTTCCACCTCAGAGACCCCACAGTGCCTTCCCC
GGCGGCCCTTACTGCGAGCCCAGCCTTGGCCCAGGGGCATGCGTCGCGCC
AAGACGCACCGGCACGCCGGGTGCTCGTTACTTTTTCCAGTGGCAGGTGC
CAGGCCGCAGGGGCGAAGAGGTTCCTCTATTCTTCGCACAGGGCGAGCCG
GGCCGGGGAGGACGCCTTCGTGGAGGAGATCCAGGAGCAGGTGCGGCAAT
GGCGGGACTCCGGGGGGGGAAGAGGAGGGAGCGAGGGGGAAGAGACGTAC
AGTGTCAGCGTCAATTTCTCCCCGTCGGGCGCACTGAAGAAGACGGTGTG
GAAAGTGACGGCGGGGGAGGGAAGGAAGGGAGGGGGGAGGGAGGGGGAGA
GGAAGACACCGACTTCGATGTGTTGGCGAACGTGTCGCTGCTCCGTGTCT
CCACTCCCGCGCTTCCCGCCCTTTCCCCCCCCTCGCCCTCCTCCGCACCT
TCCCCCTTGTCTCCCTCCTCCCTCCCACCCGCCCCCTCCCTCACGTGAGT
CCAAAGCAACAACAAGCTTGGTTGATGCCGCGTACTTGCTTTCGTCGGAT
TATGACGCCCCTTTTTTTTCTCTTTTTTTCCGGTTCCATCTCCATCTTGA
TCGTTGAAGTCCCCCCCTGGAACGGGCGCTCCTTCCCCTTGATCCCCTCA
CCAGTCGAGCCTCTGCACCACCCTTTCTTCCCTTCCGTCCCTGCCTCGTC
AGAAACCTACACTAGTACGCTTGCACACACGATCCTCCCCTCTCCCCTCC

protein sequence of rna7823

>rna7823-protein ID=rna7823-protein|Name=rna7823|organism=Nannochloropsis gaditana|type=polypeptide|length=228bp
MLLRVLAAKSVDFWTVIAESRGGLLASSPAPLRPPRPGSCVIRSCDLDIP
HAYNRKMTIVTTAAAAVLRLSRRRCTASLHQTMRHVRPSPFSTNASGRAH
TPPHHLEVTPEVRRRNRFVALACVVFAGSVYTYSIRKLKEEDLSDLEEEV
TVVNLHESGLKATKFKSLLEESRGDAAAEAAEEAVEEEMERQLEQGVVEG
VAMIAEEEGRGEEGGKGGWKRWVFFWRR

mRNA from alignment at CM002474.1:54250..55445-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7823 ID=rna7823|Name=rna7823|organism=Nannochloropsis gaditana|type=mRNA|length=1196bp|location=Sequence derived from alignment at CM002474.1:54250..55445- (Nannochloropsis gaditana)
ATGCTGTTACGCGTCCTGGCGGCCAAAAGCGTGGACTTTTGGACAGTGAT
AGCCGAGTCAAGGTATCACTAGCCTGTCGCCTAGTGCTTCTTCAGCGACA
GCACACGGGAAATTGAAAATGGGAAAGGGATTAAAGCCCACACCAGGAGT
GGAAAAAAGCCGCACCACCGCATCACTATCTTTTGTTTGCCATGGTTTTC
CATCTGTATGTGACGCTTTTGCCATGACCCATTCCTTGCACATTAAGAGG
CGGTCTGCTTGCTTCAAGCCCCGCTCCTCTTCGACCTCCCCGGCCTGGGA
GCTGCGTCATTCGGAGCTGCGATCTCGATATACCACACGCATATAATCGG
AAGATGACCATCGTCACGACCGCGGCGGCTGCGGTACTTCGTCTGAGCCG
CAGAAGATGTACAGCTTCCTTGCACCAGACCATGCGCCATGTGCGCCCGT
CACCCTTCTCGACAAATGCGAGCGGACGAGTAAGTGCATTCAGTAGATTG
GCAGCCTTCTATTTTGCCTACCACATGCTGGCCTCATTTACCTTTACCCC
TGAATGTAGGCGCATACACCGCCCCATCATCTGGAAGTGACACCGGAAGT
CCGGCGGCGCAATCGGTTCGTCGCATTGGCATGCGTGGTCTTTGCGGGGT
CTGTCTACACGTACTCGATCCGGAAATTGAAAGAGGTACGTCCGGCGCGG
GCACGGGAAAGAACGTGCACGGAGGCGTCAACCTCCTCAGCGGTGTCGCT
TTGGACCATGGTGTTATTGATTTTGTGAATGGGCGGCTACCCTCGTGTGA
TCTGTGCGCAATGGCGGCGCTATCGTGTCGGAACGAGAACGAGGCTCGGA
TCCAGATGTCGATCCTGAGAGACTTCCACCACCACCTCCACTCCCTCTCA
AATCGTCTCCTTCCCTCCCTTTCCTCCAGGAGGACCTGTCGGACCTGGAA
GAGGAAGTGACGGTGGTGAACTTGCACGAAAGCGGGTTGAAGGCCACCAA
GTTCAAGAGCCTCCTAGAGGAGAGCCGGGGGGACGCGGCGGCGGAGGCGG
CGGAGGAGGCGGTGGAGGAGGAGATGGAGCGGCAGCTAGAGCAAGGGGTG
GTGGAGGGGGTGGCCATGATCGCGGAGGAGGAAGGGAGGGGGGAGGAGGG
AGGGAAGGGGGGTTGGAAACGCTGGGTTTTCTTCTGGCGGCGATGA

Coding sequence (CDS) from alignment at CM002474.1:54250..55445-

>rna7823 ID=rna7823|Name=rna7823|organism=Nannochloropsis gaditana|type=CDS|length=2748bp|location=Sequence derived from alignment at CM002474.1:54250..55445- (Nannochloropsis gaditana)
GAGGACCTGTCGGACCTGGAAGAGGAAGTGACGGTGGTGAACTTGCACGA
AAGCGGGTTGAAGGCCACCAAGTTCAAGAGCCTCCTAGAGGAGAGCCGGG
GGGACGCGGCGGCGGAGGCGGCGGAGGAGGCGGTGGAGGAGGAGATGGAG
CGGCAGCTAGAGCAAGGGGTGGTGGAGGGGGTGGCCATGATCGCGGAGGA
GGAAGGGAGGGGGGAGGAGGGAGGGAAGGGGGGTTGGAAACGCTGGGTTT
TCTTCTGGCGGCGATGAGCGCATACACCGCCCCATCATCTGGAAGTGACA
CCGGAAGTCCGGCGGCGCAATCGGTTCGTCGCATTGGCATGCGTGGTCTT
TGCGGGGTCTGTCTACACGTACTCGATCCGGAAATTGAAAGAGAGGCGGT
CTGCTTGCTTCAAGCCCCGCTCCTCTTCGACCTCCCCGGCCTGGGAGCTG
CGTCATTCGGAGCTGCGATCTCGATATACCACACGCATATAATCGGAAGA
TGACCATCGTCACGACCGCGGCGGCTGCGGTACTTCGTCTGAGCCGCAGA
AGATGTACAGCTTCCTTGCACCAGACCATGCGCCATGTGCGCCCGTCACC
CTTCTCGACAAATGCGAGCGGACGAATGCTGTTACGCGTCCTGGCGGCCA
AAAGCGTGGACTTTTGGACAGTGATAGCCGAGTCAAGGAGGACCTGTCGG
ACCTGGAAGAGGAAGTGACGGTGGTGAACTTGCACGAAAGCGGGTTGAAG
GCCACCAAGTTCAAGAGCCTCCTAGAGGAGAGCCGGGGGGACGCGGCGGC
GGAGGCGGCGGAGGAGGCGGTGGAGGAGGAGATGGAGCGGCAGCTAGAGC
AAGGGGTGGTGGAGGGGGTGGCCATGATCGCGGAGGAGGAAGGGAGGGGG
GAGGAGGGAGGGAAGGGGGGTTGGAAACGCTGGGTTTTCTTCTGGCGGCG
ATGAGCGCATACACCGCCCCATCATCTGGAAGTGACACCGGAAGTCCGGC
GGCGCAATCGGTTCGTCGCATTGGCATGCGTGGTCTTTGCGGGGTCTGTC
TACACGTACTCGATCCGGAAATTGAAAGAGAGGCGGTCTGCTTGCTTCAA
GCCCCGCTCCTCTTCGACCTCCCCGGCCTGGGAGCTGCGTCATTCGGAGC
TGCGATCTCGATATACCACACGCATATAATCGGAAGATGACCATCGTCAC
GACCGCGGCGGCTGCGGTACTTCGTCTGAGCCGCAGAAGATGTACAGCTT
CCTTGCACCAGACCATGCGCCATGTGCGCCCGTCACCCTTCTCGACAAAT
GCGAGCGGACGAATGCTGTTACGCGTCCTGGCGGCCAAAAGCGTGGACTT
TTGGACAGTGATAGCCGAGTCAAGGAGGACCTGTCGGACCTGGAAGAGGA
AGTGACGGTGGTGAACTTGCACGAAAGCGGGTTGAAGGCCACCAAGTTCA
AGAGCCTCCTAGAGGAGAGCCGGGGGGACGCGGCGGCGGAGGCGGCGGAG
GAGGCGGTGGAGGAGGAGATGGAGCGGCAGCTAGAGCAAGGGGTGGTGGA
GGGGGTGGCCATGATCGCGGAGGAGGAAGGGAGGGGGGAGGAGGGAGGGA
AGGGGGGTTGGAAACGCTGGGTTTTCTTCTGGCGGCGATGAGCGCATACA
CCGCCCCATCATCTGGAAGTGACACCGGAAGTCCGGCGGCGCAATCGGTT
CGTCGCATTGGCATGCGTGGTCTTTGCGGGGTCTGTCTACACGTACTCGA
TCCGGAAATTGAAAGAGAGGCGGTCTGCTTGCTTCAAGCCCCGCTCCTCT
TCGACCTCCCCGGCCTGGGAGCTGCGTCATTCGGAGCTGCGATCTCGATA
TACCACACGCATATAATCGGAAGATGACCATCGTCACGACCGCGGCGGCT
GCGGTACTTCGTCTGAGCCGCAGAAGATGTACAGCTTCCTTGCACCAGAC
CATGCGCCATGTGCGCCCGTCACCCTTCTCGACAAATGCGAGCGGACGAA
TGCTGTTACGCGTCCTGGCGGCCAAAAGCGTGGACTTTTGGACAGTGATA
GCCGAGTCAAGGAGGACCTGTCGGACCTGGAAGAGGAAGTGACGGTGGTG
AACTTGCACGAAAGCGGGTTGAAGGCCACCAAGTTCAAGAGCCTCCTAGA
GGAGAGCCGGGGGGACGCGGCGGCGGAGGCGGCGGAGGAGGCGGTGGAGG
AGGAGATGGAGCGGCAGCTAGAGCAAGGGGTGGTGGAGGGGGTGGCCATG
ATCGCGGAGGAGGAAGGGAGGGGGGAGGAGGGAGGGAAGGGGGGTTGGAA
ACGCTGGGTTTTCTTCTGGCGGCGATGAGCGCATACACCGCCCCATCATC
TGGAAGTGACACCGGAAGTCCGGCGGCGCAATCGGTTCGTCGCATTGGCA
TGCGTGGTCTTTGCGGGGTCTGTCTACACGTACTCGATCCGGAAATTGAA
AGAGAGGCGGTCTGCTTGCTTCAAGCCCCGCTCCTCTTCGACCTCCCCGG
CCTGGGAGCTGCGTCATTCGGAGCTGCGATCTCGATATACCACACGCATA
TAATCGGAAGATGACCATCGTCACGACCGCGGCGGCTGCGGTACTTCGTC
TGAGCCGCAGAAGATGTACAGCTTCCTTGCACCAGACCATGCGCCATGTG
CGCCCGTCACCCTTCTCGACAAATGCGAGCGGACGAATGCTGTTACGCGT
CCTGGCGGCCAAAAGCGTGGACTTTTGGACAGTGATAGCCGAGTCAAG

Synonyms

Publications