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Properties
| Property Name | Value |
|---|
| Product | ubiquitin thioesterase otub1 |
| Orig transcript id | gnl|cribi|Naga_100676g3.10430.mrna |
| Orig protein id | gnl|cribi|Naga_100676g3.10430 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002474.1 | supercontig | CM002474.1:43498..46271 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna7818 ID=rna7818|Name=rna7818|organism=Nannochloropsis gaditana|type=mRNA|length=2405bp
GGCGCTTTGACGTGGGGGTGTTCATGCGCCTATCCAATTGCCGATCTTAG
AGACTGCCAAAACGACAGAAGTACTCGCAACACTTCTCAATGTACATGGC
TGGAAAGTGCATGGCGAAGTCTTCTGTCTAAGCTTGTCATGGTCTTCCAA
AACAGTCGACAAAGCAGCTCTTTATTTGCTGCTATGGTGCGTCAAGGTTG
ATGTTGAGCTCCGGCCCTGCATGGTCGTCGATCCTATATTTCAAAACCCA
TTACAAGGGAAAAAGAAGCCAGACTGTGAACCCCAAATATTTCCACACAG
GCGATCCTTGGCATCTTAAAGGACCGCGGTCTGTGACGATCGTTCGCCTT
GGCCTCTTTGGTTCGACTTTTCCGTCCTCTTTCTCTTCCTCCTGCTTCTT
GACCCTCTTCATAGAAACCTCTACCTCCCTCCTTCGCCTATAAGGCCATT
GGAGCAGCCATAACCACGATGCAACAAAGAGAAGAAGCCTCATCTCTGCC
ACGAGCTGAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGCCG
GTCATAATCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTCAA
CAGGAAGAAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGACC
GCTTGAACCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGAGA
AAGGCTTTGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAATG
CGGCGCATCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTCGC
GTATCTGGCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGGAG
AAGAAAAAGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGAAA
GAATGGGAGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTACT
GACTGTTGGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTTCG
TGGAGGAGTTGGAGGCACTCCCCCATAAAAGCCTGTCGGATTTAGAATCA
ACTTTCAACGAGCCCCACGGCGTGGCCTCCTACATGGTCTGGTACTGTCG
CCTCCTGACTTCCGGGTATTTGAAGAAGCACAAGGAGGAGTACGAGGCCT
TCTTGGATGCCAGCTACCGAGACATGGACGACTTCTGCGTCCGGGAAGTG
GAGCCGACGGGCAAGGAATGCGAGCAGGTGCAGATCATGGCCTTGGTCCG
GGCCTTGGGCGTGTGCGTCCGCATCGAATATCTGGACGGGAGAGCGTTGC
CGCCAGGGGGGCAATTGCCCTGCCACGTTTTGCCTGACGAATGGGACGGT
GGAAAGGAGGAGGGGGTGCCTGTGACGTTGCTGTACCGGCCCGGGCACTA
CGATCTGCTGGTCAAGTGAGCTGGGGGGGTCGCTGTGGAGGCGCAGAAGG
GTGTGTTTGGAAAAGAAGTGGTGAAAGGGGGCGAGCAAATATGCAGGCAG
TCACAGGTAGCGAAAGAACAACGACGCCTGTTGGTCGGGAGTATCGATGC
AAGGTTTTGTGACAGCAGCTCCATGTACAGGTCAGACGCGGAGGGCAGAC
AGTGCATGGTTTGGCGGGATTGGGACTTCCATCTATCCGGGAAAGTCCCC
GAAGCCATGCCATCCGAGGGATGGTGCGCTAGTCTCTTGGCAGATAGTGT
GCCCCAGGGGAATGAAAATAGTAGAATGTCATTGTGGTGGCGGGCCCCAT
TTCCTTTTCCTGTTTAGCCAAGTACCCTTTCAATCTCGTATCCGACTTTG
TTCATATTGCTCCAGCGATTGCGGATTTCAATGAAGACAAAGTTCCGATG
AATGTTATTTTATATTGTTGTGAAGGTGATCTCAGACTTTGCTTATAAAA
TGTATACAAGTGCACCTGGTAATCAAGCATCCAGCTAACTCGGATCGTTG
TGCGTGTAAGTTGGCTGCTACTACGAGTACAAGAGAGCCGCGCGGTCATT
GACGCGATCGAAGGCATCATTTGCAGGTATTTCAAGGTAATGGGAGATGC
TTCCGTCCATCACAGCTGGTATGGGGGCAGGTTAGAGTGAACCTGAGAAG
GGACGGCCCATGGGGAGGATCTCATTTGTTCCCAAAAGCGGTACCTTCGA
GCGCAACTGTGGGATATGATTGCTGTATGCACCCACTTAATGGAATGGGC
TATGAGAAGTATGATACAGGGAAAAGCCATTGACAATTGATGACATTTTA
AAACAAATAAAGGTCATCAACCATTGACCTCTCTTACGACAGAAACATCG
CGGGGAGTGGATGTGAGTTGGTGATATGTCAATGTAAAATTATTTAAAAC
CAGTACACTTGTGCACGCGCGAATCTGTAATACTTTCGTAGTTTCTGGAT
TCATT back to topprotein sequence of rna7818 >rna7818-protein ID=rna7818-protein|Name=rna7818|organism=Nannochloropsis gaditana|type=polypeptide|length=316bp
MQQREEASSLPRAEDVHENGLSQSQAAGHNHQVEEDRDLLTIAQQEEIDS
QIAASQPLVGPLEPPSMLLQAYKDNPEKGFVEGVEDLARRYARMRRIRRD
GNCFYRAFLFAYLAGLVEEGIEDGRKGEEKEGGGGKGRKRGRKKEWERFS
QTVKDSKAWLLTVGYEEVAIDIFWEVFVEELEALPHKSLSDLESTFNEPH
GVASYMVWYCRLLTSGYLKKHKEEYEAFLDASYRDMDDFCVREVEPTGKE
CEQVQIMALVRALGVCVRIEYLDGRALPPGGQLPCHVLPDEWDGGKEEGV
PVTLLYRPGHYDLLVK back to topmRNA from alignment at CM002474.1:43498..46271- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna7818 ID=rna7818|Name=rna7818|organism=Nannochloropsis gaditana|type=mRNA|length=2774bp|location=Sequence derived from alignment at CM002474.1:43498..46271- (Nannochloropsis gaditana)
AAAACAGTCGACAAAGCAGCTCTTTATTTGCTGCTATGGTGCGTCAAGGT
TGATGTTGAGCTCCGGCCCTGCATGGTCGTCGATCCTATATTTCAAAACC
CATTACAAGGGAAAAAGAAGCCAGACTGTGAACCCCAAATATTTCCACAC
AGGCGATCCTTGGCATCTTAAAGGACCGCGGTCTGTGACGATCGTTCGCC
TTGGCCTCTTTGGTTCGACTTTTCCGTCCTCTTTCTCTTCCTCCTGCTTC
TTGACCCTCTTCATAGAAACCTCTACCTCCCTCCTTCGCCTATAAGGCCA
TTGGAGCAGCCATAACCACGATGCAACAAAGAGAAGAAGCCTCATCTCTG
CCACGAGCTGAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGC
CGGTCATAATCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTC
AACAGGAAGAAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGA
CCGCTTGAACCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGA
GAAAGGCTTTGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAA
TGCGGCGCATCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTC
GCGTATCTGGCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGG
AGAAGAAAAAGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGA
AAGAATGGGAGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTA
CTGACTGTTGGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTT
CGTGGAGGAGGTACGTGGCAAGGGAGGAAAGGATGGGAATGCCCCAATGG
AACAGGAAGAGGGCTTGTGCGTGGGCTGTTGCAGGTGGTACTTTTCCCCT
CGTTTCCGCCCTTATTCCTCCCCCTTAACCCCATTAAACAGTTGGAGGCA
CTCCCCCATAAAAGCCTGTCGGATTTAGAATCAACTTTCAACGAGCCCCA
CGGCGTGGCCTCCTACATGGTCTGGTACTGTCGCCTCCTGACTTCCGGGT
ATTTGAAGAAGCACAAGGAGGAGTACGAGGCCTTCTTGGATGCCAGGTAA
GAAGCATAGAGGCGAGGGAGGGAGTTTTATTATAAAAAAACTGGTGTGGC
GGATCCCTCACAAAGTCTTATGATCTGCGTCTTTGTGTGGGACCGCGCCC
TGAGTCCTCCCCTTCAGTCCCGTCCTCGCTCTGTGCTGAGGGTGCGACAC
AGCGGGTGGGGCCACGAGTGGACTCCCTTTCCGGCCCGGTCTTTGCATGC
CTGGAGCCTGCCATGTGTACATGCCCTTCCTTTTTGCTTCCCACACTCTG
CTGCCACCGACACGCTTATGTCGCCCCTCCCAGGGGGGGGCTACCGTCTT
GCAGTCCGGCCCCGGCACTGATCTAGACCGCTTGGTCCATCTCTTTCATA
CTTTTCCCAACATCCCTGGGGCGCACTCACAGCTACCGAGACATGGACGA
CTTCTGCGTCCGGGAAGTGGAGCCGACGGGCAAGGAATGCGAGCAGGTGC
AGATCATGGCCTTGGTCCGGGCCTTGGGCGTGTGCGTCCGCATCGAATAT
CTGGACGGGAGAGCGTTGCCGCCAGGGGGGCAATTGCCCTGCCACGTTTT
GCCTGACGAATGGGACGGTGGAAAGGAGGAGGGGGTGCCTGTGACGTTGC
TGTACCGGCCCGGGCACTACGATCTGCTGGTCAAGTGAGCTGGGGGGGTC
GCTGTGGAGGCGCAGAAGGGTGTGTTTGGAAAAGAAGTGGTGAAAGGGGG
CGAGCAAATATGCAGGCAGTCACAGGTAGCGAAAGAACAACGACGCCTGT
TGGTCGGGAGTATCGATGCAAGGTTTTGTGACAGCAGCTCCATGTACAGG
TCAGACGCGGAGGGCAGACAGTGCATGGTTTGGCGGGATTGGGACTTCCA
TCTATCCGGGAAAGTCCCCGAAGCCATGCCATCCGAGGGATGGTGCGCTA
GTCTCTTGGCAGATAGTGTGCCCCAGGGGAATGAAAATAGTAGAATGTCA
TTGTGGTGGCGGGCCCCATTTCCTTTTCCTGTTTAGCCAAGTACCCTTTC
AATCTCGTATCCGACTTTGTTCATATTGCTCCAGCGATTGCGGATTTCAA
TGAAGACAAAGTTCCGATGAATGTTATTTTATATTGTTGTGAAGGTGATC
TCAGACTTTGCTTATAAAATGTATACAAGTGCACCTGGTAATCAAGCATC
CAGCTAACTCGGATCGTTGTGCGTGTAAGTTGGCTGCTACTACGAGTACA
AGAGAGCCGCGCGGTCATTGACGCGATCGAAGGCATCATTTGCAGGTATT
TCAAGGTAATGGGAGATGCTTCCGTCCATCACAGCTGGTATGGGGGCAGG
TTAGAGTGAACCTGAGAAGGGACGGCCCATGGGGAGGATCTCATTTGTTC
CCAAAAGCGGTACCTTCGAGCGCAACTGTGGGATATGATTGCTGTATGCA
CCCACTTAATGGAATGGGCTATGAGAAGTATGATACAGGGAAAAGCCATT
GACAATTGATGACATTTTAAAACAAATAAAGGTCATCAACCATTGACCTC
TCTTACGACAGAAACATCGCGGGGAGTGGATGTGAGTTGGTGATATGTCA
ATGTAAAATTATTTAAAACCAGTACACTTGTGCACGCGCGAATCTGTAAT
ACTTTCGTAGTTTCTGGATTCATT back to topCoding sequence (CDS) from alignment at CM002474.1:43498..46271- >rna7818 ID=rna7818|Name=rna7818|organism=Nannochloropsis gaditana|type=CDS|length=2853bp|location=Sequence derived from alignment at CM002474.1:43498..46271- (Nannochloropsis gaditana)
CTACCGAGACATGGACGACTTCTGCGTCCGGGAAGTGGAGCCGACGGGCA
AGGAATGCGAGCAGGTGCAGATCATGGCCTTGGTCCGGGCCTTGGGCGTG
TGCGTCCGCATCGAATATCTGGACGGGAGAGCGTTGCCGCCAGGGGGGCA
ATTGCCCTGCCACGTTTTGCCTGACGAATGGGACGGTGGAAAGGAGGAGG
GGGTGCCTGTGACGTTGCTGTACCGGCCCGGGCACTACGATCTGCTGGTC
AAGTGATTGGAGGCACTCCCCCATAAAAGCCTGTCGGATTTAGAATCAAC
TTTCAACGAGCCCCACGGCGTGGCCTCCTACATGGTCTGGTACTGTCGCC
TCCTGACTTCCGGGTATTTGAAGAAGCACAAGGAGGAGTACGAGGCCTTC
TTGGATGCCAGATGCAACAAAGAGAAGAAGCCTCATCTCTGCCACGAGCT
GAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGCCGGTCATAA
TCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTCAACAGGAAG
AAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGACCGCTTGAA
CCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGAGAAAGGCTT
TGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAATGCGGCGCA
TCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTCGCGTATCTG
GCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGGAGAAGAAAA
AGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGAAAGAATGGG
AGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTACTGACTGTT
GGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTTCGTGGAGGA
GCTACCGAGACATGGACGACTTCTGCGTCCGGGAAGTGGAGCCGACGGGC
AAGGAATGCGAGCAGGTGCAGATCATGGCCTTGGTCCGGGCCTTGGGCGT
GTGCGTCCGCATCGAATATCTGGACGGGAGAGCGTTGCCGCCAGGGGGGC
AATTGCCCTGCCACGTTTTGCCTGACGAATGGGACGGTGGAAAGGAGGAG
GGGGTGCCTGTGACGTTGCTGTACCGGCCCGGGCACTACGATCTGCTGGT
CAAGTGATTGGAGGCACTCCCCCATAAAAGCCTGTCGGATTTAGAATCAA
CTTTCAACGAGCCCCACGGCGTGGCCTCCTACATGGTCTGGTACTGTCGC
CTCCTGACTTCCGGGTATTTGAAGAAGCACAAGGAGGAGTACGAGGCCTT
CTTGGATGCCAGATGCAACAAAGAGAAGAAGCCTCATCTCTGCCACGAGC
TGAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGCCGGTCATA
ATCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTCAACAGGAA
GAAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGACCGCTTGA
ACCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGAGAAAGGCT
TTGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAATGCGGCGC
ATCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTCGCGTATCT
GGCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGGAGAAGAAA
AAGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGAAAGAATGG
GAGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTACTGACTGT
TGGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTTCGTGGAGG
AGCTACCGAGACATGGACGACTTCTGCGTCCGGGAAGTGGAGCCGACGGG
CAAGGAATGCGAGCAGGTGCAGATCATGGCCTTGGTCCGGGCCTTGGGCG
TGTGCGTCCGCATCGAATATCTGGACGGGAGAGCGTTGCCGCCAGGGGGG
CAATTGCCCTGCCACGTTTTGCCTGACGAATGGGACGGTGGAAAGGAGGA
GGGGGTGCCTGTGACGTTGCTGTACCGGCCCGGGCACTACGATCTGCTGG
TCAAGTGATTGGAGGCACTCCCCCATAAAAGCCTGTCGGATTTAGAATCA
ACTTTCAACGAGCCCCACGGCGTGGCCTCCTACATGGTCTGGTACTGTCG
CCTCCTGACTTCCGGGTATTTGAAGAAGCACAAGGAGGAGTACGAGGCCT
TCTTGGATGCCAGATGCAACAAAGAGAAGAAGCCTCATCTCTGCCACGAG
CTGAGGACGTTCACGAGAACGGCCTAAGTCAAAGTCAGGCGGCCGGTCAT
AATCATCAAGTCGAGGAAGACCGGGACCTCCTCACCATAGCTCAACAGGA
AGAAATCGATTCACAAATCGCTGCTTCCCAGCCCTTAGTTGGACCGCTTG
AACCCCCATCCATGTTGTTACAGGCATATAAAGATAACCCAGAGAAAGGC
TTTGTGGAGGGCGTGGAGGACTTGGCGAGACGATACGCGAGAATGCGGCG
CATCCGAAGGGATGGAAATTGTTTTTACCGGGCATTTTTGTTCGCGTATC
TGGCCGGGCTGGTGGAAGAAGGGATCGAAGATGGAAGGAAAGGAGAAGAA
AAAGAGGGAGGAGGAGGGAAAGGGAGGAAACGGGGCAGAAAGAAAGAATG
GGAGCGGTTCTCACAAACAGTCAAGGACAGTAAAGCCTGGTTACTGACTG
TTGGGTACGAAGAAGTGGCGATCGATATATTCTGGGAAGTTTTCGTGGAG
GAG back to top
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