rna7815, rna7815 (mRNA) Nannochloropsis gaditana

Overview
Namerna7815
Unique Namerna7815
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length785
Alignment locationCM002474.1:41822..43356 -

Link to JBrowse

Properties
Property NameValue
ProductWW/Rsp5/WWP
Orig transcript idgnl|cribi|Naga_100676g2.10428.mrna
Orig protein idgnl|cribi|Naga_100676g2.10428
GbkeymRNA
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002474.1supercontigCM002474.1:41822..43356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100676g2gene7572Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7815rna7815-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22876.1cds7794Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7815 ID=rna7815|Name=rna7815|organism=Nannochloropsis gaditana|type=mRNA|length=785bp
TTCCAGGTGGACGCCATAGGCGGATCTCGCACGGGCGGAGACGAGACGGG
GAGCGACAATGAGGTCCAACGGACGATGCTCCAGATCGTGACGGAGCTGG
ACGGCTTCGACCCGCGTGGGAACATTAAGGTGCTTATGGCCACCAACCGG
CCTGACACCCTCGATCCAGCCCTTCTCCGCCCGGGACGCCTGGATCGAAA
GGTGGAATTCGCGCTGCCAGACCTGGAGGGACGTGCGCACATTCTAAAAA
TCCATACCAAGGCCATGAATGTGGACCGCGACATCCGCTTTGAGGTGATT
GCCCGTTTGTGCCCCAACACGACGGGGGCAGAGCTACGGAGTGTCTGCAC
GGAGGCTGGGATGTTTGCGATCCGGGCTCGGAAAAAGAGCATTAGCGAGA
AGGATTTCATGGACAGTGTCAACAAGGTGATCAAAGGATATCAGAAATTC
TCGGCGACGCCCAAATACATGGTGTACAATTAGAGGTATTATGGGTGGCG
CATGGGATCAGCGGGCATCGCGAGAGCAGGCGCGTGTACGAGAGAAAGAG
CAAAGCAACGTCTACAGCGGAAGTCCGACGGTGCCTCCGGGATGTGTTTG
GCATTGTGGCACGAAGTAAGAATGAAAAGAAACAACCACAAGATTGGCAC
CAGTTCATGTCCTTGTCGTGCCGGAATGTTACCATCCTTCCCCCGGGCGC
CCTACCCCATTCTTCCTTTCCGTTTCCCCTCCTCCCCTCCTTTCTCATTT
GGGTGGCGATCCCGGTGGCGGGGGGGGCACAAATG
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protein sequence of rna7815

>rna7815-protein ID=rna7815-protein|Name=rna7815|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MNMKPSLSLLSFFLNLLMILLPSFPLTYRFQTGTHSTESLRKREKMAGRG
RGRGMTLPAWMTKEGGPTQTAEARSSSNGDHSGSNTNPLGGLQDHVSTTN
VPQGGRRSRWEADQPSQAALPTSAPAQHSSIKQAPTPPPARAASPSPANA
NPTTISAPPVLGAAPSSTTPASGEGTALASAAYGSLSTSGTNAPTASTAG
YPQMHMQHQQAYGNWQHPLQHPQGQQDYYHQYYQQQQMQQHQQYYAQAQQ
AAAYAAAMPPAPAPAPASAPPPVPPEIADNVEEGYQPVYDPKTQYWYFWN
AASNQVTWEKPLKDKSKAFVPPPPPGSPPK
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mRNA from alignment at CM002474.1:41822..43356-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7815 ID=rna7815|Name=rna7815|organism=Nannochloropsis gaditana|type=mRNA|length=1535bp|location=Sequence derived from alignment at CM002474.1:41822..43356- (Nannochloropsis gaditana)
CAGACAACAGACGAGGGTTGAGTGTCCACATCTTCCGCGCGCATTCATGC
TCAGCAGGCTGTGTTAGTCATGAATATGAAGCCATCTCTTTCCCTCTTGT
CTTTCTTCTTAAACCTCCTGATGATCTTACTTCCCTCCTTCCCTCTAACC
TATCGCTTCCAGACCGGTACACACTCGACAGAGTCCCTGAGGAAGCGTGA
AAAGATGGCGGGACGTGGACGCGGCAGGGGTATGACGTTGCCAGCGTAAG
TACATAGGGCTTGGCCTTCCTTTTTTGTCGGCCTCACTCACGACACTCGA
CCTCTCTCATCTGCCCCTCCATTTCGTCGCTGCCGAACTGATCTGTCCGA
GGACGGGGAAATTCACGTGTCACCCGTCCTTCGATGATTTTAAGAAAGTG
AAGATGTGAAATGTAGATGCCTAGAATGCAATGCACTGACGCGTATTTTA
AAACTTCAGGTGGATGACTAAAGAAGGTGGGCCGACCCAGACTGCGGAGG
CGCGCAGCAGCAGCAATGGCGACCACAGTGGCAGCAATACAAATCCTCTC
GGGGGACTCCAAGACCATGTCTCCACTACGAATGTGCCCCAGGGAGGCCG
ACGGTCCAGATGGGAAGCTGATCAGCCTTCCCAGGCTGCCCTTCCTACAT
CGGCTCCCGCCCAACATTCCAGTATCAAACAAGCACCGACGCCCCCCCCA
GCGCGAGCAGCCTCCCCTTCTCCTGCCAATGCCAATCCTACGACCATCAG
CGCGCCGCCAGTGCTGGGAGCTGCACCGTCCTCAACCACACCGGCCTCGG
GCGAAGGCACCGCTTTGGCATCTGCGGCCTATGGGAGCTTATCCACGTCT
GGAACCAATGCTCCCACCGCCAGCACGGCGGGCTATCCGCAAATGCACAT
GCAGCATCAGCAGGCCTACGGCAACTGGCAACATCCCCTCCAGCACCCTC
AGGGTCAACAAGACTACTACCACCAGTATTACCAGCAGCAGCAAATGGTA
CGTCCTCGGAAACGTATCTCGGTGGATTCAGCTGCCTTGTTCTTTTCTTC
TTCCCCTTCTCACCATGCAATCCCCCCTTTTCTCTTCACCTCTCTTAGCA
GCAGCACCAGCAGTACTATGCCCAGGCGCAACAAGCGGCTGCCTACGCCG
CTGCCATGCCTCCTGCTCCTGCCCCAGCGCCCGCTTCGGCCCCTCCACCG
GTACCTCCTGAAATCGCGGACAATGTGGAGGAGGGCTATCAACCCGTCTA
CGACCCCAAGACCCAGTACTGGTATTTTTGGAACGCGGCGTCCAATCAGG
TCACGTGGGAGAAGCCTTTGAAAGACAAGAGCAAGGCATTTGTGCCCCCC
CCGCCACCGGGATCGCCACCCAAATGAGAAAGGAGGGGAGGAGGGGAAAC
GGAAAGGAAGAATGGGGTAGGGCGCCCGGGGGAAGGATGGTAACATTCCG
GCACGACAAGGACATGAACTGGTGCCAATCTTGTGGTTGTTTCTTTTCAT
TCTTACTTCGTGCCACAATGCCAAACACATCCCGG
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Coding sequence (CDS) from alignment at CM002474.1:41822..43356-

>rna7815 ID=rna7815|Name=rna7815|organism=Nannochloropsis gaditana|type=CDS|length=2979bp|location=Sequence derived from alignment at CM002474.1:41822..43356- (Nannochloropsis gaditana)
CAGCAGCACCAGCAGTACTATGCCCAGGCGCAACAAGCGGCTGCCTACGC
CGCTGCCATGCCTCCTGCTCCTGCCCCAGCGCCCGCTTCGGCCCCTCCAC
CGGTACCTCCTGAAATCGCGGACAATGTGGAGGAGGGCTATCAACCCGTC
TACGACCCCAAGACCCAGTACTGGTATTTTTGGAACGCGGCGTCCAATCA
GGTCACGTGGGAGAAGCCTTTGAAAGACAAGAGCAAGGCATTTGTGCCCC
CCCCGCCACCGGGATCGCCACCCAAATGAGTGGATGACTAAAGAAGGTGG
GCCGACCCAGACTGCGGAGGCGCGCAGCAGCAGCAATGGCGACCACAGTG
GCAGCAATACAAATCCTCTCGGGGGACTCCAAGACCATGTCTCCACTACG
AATGTGCCCCAGGGAGGCCGACGGTCCAGATGGGAAGCTGATCAGCCTTC
CCAGGCTGCCCTTCCTACATCGGCTCCCGCCCAACATTCCAGTATCAAAC
AAGCACCGACGCCCCCCCCAGCGCGAGCAGCCTCCCCTTCTCCTGCCAAT
GCCAATCCTACGACCATCAGCGCGCCGCCAGTGCTGGGAGCTGCACCGTC
CTCAACCACACCGGCCTCGGGCGAAGGCACCGCTTTGGCATCTGCGGCCT
ATGGGAGCTTATCCACGTCTGGAACCAATGCTCCCACCGCCAGCACGGCG
GGCTATCCGCAAATGCACATGCAGCATCAGCAGGCCTACGGCAACTGGCA
ACATCCCCTCCAGCACCCTCAGGGTCAACAAGACTACTACCACCAGTATT
ACCAGCAGCAGCAAATGATGAATATGAAGCCATCTCTTTCCCTCTTGTCT
TTCTTCTTAAACCTCCTGATGATCTTACTTCCCTCCTTCCCTCTAACCTA
TCGCTTCCAGACCGGTACACACTCGACAGAGTCCCTGAGGAAGCGTGAAA
AGATGGCGGGACGTGGACGCGGCAGGGGTATGACGTTGCCAGCCAGCAGC
ACCAGCAGTACTATGCCCAGGCGCAACAAGCGGCTGCCTACGCCGCTGCC
ATGCCTCCTGCTCCTGCCCCAGCGCCCGCTTCGGCCCCTCCACCGGTACC
TCCTGAAATCGCGGACAATGTGGAGGAGGGCTATCAACCCGTCTACGACC
CCAAGACCCAGTACTGGTATTTTTGGAACGCGGCGTCCAATCAGGTCACG
TGGGAGAAGCCTTTGAAAGACAAGAGCAAGGCATTTGTGCCCCCCCCGCC
ACCGGGATCGCCACCCAAATGAGTGGATGACTAAAGAAGGTGGGCCGACC
CAGACTGCGGAGGCGCGCAGCAGCAGCAATGGCGACCACAGTGGCAGCAA
TACAAATCCTCTCGGGGGACTCCAAGACCATGTCTCCACTACGAATGTGC
CCCAGGGAGGCCGACGGTCCAGATGGGAAGCTGATCAGCCTTCCCAGGCT
GCCCTTCCTACATCGGCTCCCGCCCAACATTCCAGTATCAAACAAGCACC
GACGCCCCCCCCAGCGCGAGCAGCCTCCCCTTCTCCTGCCAATGCCAATC
CTACGACCATCAGCGCGCCGCCAGTGCTGGGAGCTGCACCGTCCTCAACC
ACACCGGCCTCGGGCGAAGGCACCGCTTTGGCATCTGCGGCCTATGGGAG
CTTATCCACGTCTGGAACCAATGCTCCCACCGCCAGCACGGCGGGCTATC
CGCAAATGCACATGCAGCATCAGCAGGCCTACGGCAACTGGCAACATCCC
CTCCAGCACCCTCAGGGTCAACAAGACTACTACCACCAGTATTACCAGCA
GCAGCAAATGATGAATATGAAGCCATCTCTTTCCCTCTTGTCTTTCTTCT
TAAACCTCCTGATGATCTTACTTCCCTCCTTCCCTCTAACCTATCGCTTC
CAGACCGGTACACACTCGACAGAGTCCCTGAGGAAGCGTGAAAAGATGGC
GGGACGTGGACGCGGCAGGGGTATGACGTTGCCAGCCAGCAGCACCAGCA
GTACTATGCCCAGGCGCAACAAGCGGCTGCCTACGCCGCTGCCATGCCTC
CTGCTCCTGCCCCAGCGCCCGCTTCGGCCCCTCCACCGGTACCTCCTGAA
ATCGCGGACAATGTGGAGGAGGGCTATCAACCCGTCTACGACCCCAAGAC
CCAGTACTGGTATTTTTGGAACGCGGCGTCCAATCAGGTCACGTGGGAGA
AGCCTTTGAAAGACAAGAGCAAGGCATTTGTGCCCCCCCCGCCACCGGGA
TCGCCACCCAAATGAGTGGATGACTAAAGAAGGTGGGCCGACCCAGACTG
CGGAGGCGCGCAGCAGCAGCAATGGCGACCACAGTGGCAGCAATACAAAT
CCTCTCGGGGGACTCCAAGACCATGTCTCCACTACGAATGTGCCCCAGGG
AGGCCGACGGTCCAGATGGGAAGCTGATCAGCCTTCCCAGGCTGCCCTTC
CTACATCGGCTCCCGCCCAACATTCCAGTATCAAACAAGCACCGACGCCC
CCCCCAGCGCGAGCAGCCTCCCCTTCTCCTGCCAATGCCAATCCTACGAC
CATCAGCGCGCCGCCAGTGCTGGGAGCTGCACCGTCCTCAACCACACCGG
CCTCGGGCGAAGGCACCGCTTTGGCATCTGCGGCCTATGGGAGCTTATCC
ACGTCTGGAACCAATGCTCCCACCGCCAGCACGGCGGGCTATCCGCAAAT
GCACATGCAGCATCAGCAGGCCTACGGCAACTGGCAACATCCCCTCCAGC
ACCCTCAGGGTCAACAAGACTACTACCACCAGTATTACCAGCAGCAGCAA
ATGATGAATATGAAGCCATCTCTTTCCCTCTTGTCTTTCTTCTTAAACCT
CCTGATGATCTTACTTCCCTCCTTCCCTCTAACCTATCGCTTCCAGACCG
GTACACACTCGACAGAGTCCCTGAGGAAGCGTGAAAAGATGGCGGGACGT
GGACGCGGCAGGGGTATGACGTTGCCAGC
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Synonyms
Publications