rna7813, rna7813 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7813
Unique Name	rna7813
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3394
Alignment location	CM002474.1:39150..40213 +

Link to JBrowse

Properties


Property Name	Value
Product	26s protease regulatory subunit 7
Orig transcript id	gnl\|cribi\|Naga_100788g1.10001.mrna
Orig protein id	gnl\|cribi\|Naga_100788g1.10001
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002474.1	supercontig	CM002474.1:39150..40213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100788g1	gene7570	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7813	rna7813-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22882.1	cds7792	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002474.1:39150..40213+
coding sequence from alignment at CM002474.1:39150..40213+

mRNA sequence

>rna7813 ID=rna7813|Name=rna7813|organism=Nannochloropsis gaditana|type=mRNA|length=3394bp
CCGACAGGATCCAGGTCCATCCAGGCCCTTCCTCCCGCACGATATGCCCA
GTGTCACGTATGCTATTCAACACCAATTACGAGGTTCCCACTCGGGGTTG
TTCGGTTTGGGTTAAAGTTTGAAGGGAGGGCGGACCGCGCTTCTCAAGAA
TTCTTCTCATTTAAGCGAGGGGTAGCAGCGGCACCTGGTTTCCACGGGCA
CATGTTACCACTGCCCTCCCACGTGTGCTTGCACGCACCAAACGACTCCC
ACAAGCGTATGATTGTGCAGCGGTTGGACACATACGAGAAAGAGACACTT
TCGGGAATAATTGCACCAGTCATTTTTTGAGCGTGAGGCCCGGGGGATGA
TGGGCGGCAGGGCTCCTCTCCCTTGACCTGGGGACTGTCTGAAGAGAGTT
CAATTGAAGCGTAGGCCAGTGCGTGGTGCTTCGAGGCAAGTAAGTGCGAT
GTGGAGAATGACTTTGGCGCAGGAATAATTACAACAGACCACCGATGGCC
AAGGTTTTGGGAGAAACAGGCATTGGCCATATCAACAAGAAGGACTCCTC
CTGCTAACCTCCTCCCATTTCCAAACCTTTGTGGCGGTACCCTGCCTTAG
ATTTTGCCTTTAGCCCCTCGTATGACTCATTCTCTCCTCCCGCATGCTTT
TAATCCTGTTTTGGTTTATGTCGACAGGATTCTGGACGAGCGATGTTGGT
ACTAACTTGCTTTTAAAAGGGGTACAACTTGTACGCAACTCTTCACTAGA
TATGTTTGCTATTGAGCGGTACGAAGCCACAGAGGCGCTCGAAAATCGAC
AAGATGGCCAAGCCGAGAAGAACGACAAGCTTGCCCAGTATCTGGCGCGA
GTGCGGTCACGACATGGCCTTAAGAAGGAGAAAAAAAGCCAAAAACGACC
TCGAGTAGCAGAGGAGGGGGTAGGACAGCCAACAGATGTTCGCGCTCCCT
CAATGGAAAGTTCGGGCCTAGAACGGAAAAAAAAGAAAGAAGATCGTGGA
ACCGAGAGATGTGAGAGAACGACGCAGGGTACGCAGGCAAAAGCGAGGCA
CCCGGCGGACCCTCCCCCTCTCCCCTCGGCATCGCCCGCATTCCTGCCTT
TTCCCACGTCTGGGACCCCTTCTTCCCTCCCTGCCAGCTCCCCTCCCTCC
CTCGACCCTCCCAGCCGTGCCACCCCAGGGCTCGACAGCGTGCGTCGCCT
CTTGAGTGGGCACATGCACAAGGCGACCCGGAGCCGACCGCTTCCCTTCC
CACCAGTGGCCTCGGGAGGGACGGAGATAGGACGGTCGGAGGGAGCCAAG
ATGGAAGAGCAGTCTATCCTGGCCTCGCATACCGCCCCCGGAAAGGCCTC
TTTGCCTCCCTCCAAAACGTCCGCCCAAGACATTGACGGGTCGGCCCACC
GTCCCCAGGCACGAGGCCCCCAAGGCCCTACCACCCAGCCTGCCACGTTC
CCCACCTCCCTCCGCCCCTCCCTCCCCTCCTCCCTCCCCATGGCCGACGC
GTGGAAGCGTTGGGGTCTCGACACCCGCCTCCTCCCAATTCTGGCGTCCC
GAGGCATGTCTACCCTCCTCCCGGTCCAAGCACAGGTCCTCCCGCACCTC
CTCCCGCCCCTCCTGCCGCCCGCCCGACTCCTCCCTTGCCGGGACGCAGT
AGTCTGCGCCCCCACGGGGAGTGGGAAGACCTTGATCTACGTCCTTGTTC
TTCTCCACCAGCTCGCCAACCGCCGGGTGGGGAGGTTGAGGGGGCTTGTC
CTGGTTCCTAGCCGGGACCTCGCCACGCAGGTTTGGCGGGAATTCCAGAC
TTTGGCCCCCACGGTAGGAGTTAAGGTGGGCTTGGCGGTGGGCCAGTCGG
ATTTCCAGGCGGAGCAACAAAGGGTGATGGGGTGGGAAGGCGGGGGGAAG
GAGGGCGGGAGGGGCGTGGACGTGTTGGTGGCTACCCCGGGGAGGTTGAT
CGATCATTTGGAGAGGACCCCAGGCTTCACGCTCACGCACTTGCGGTGCC
TGGTGCTGGACGAGGCGGACCGCCTCCTCAACCAGTCTTACCAGGGGTGG
TCAAGCCGGATCCACCACGCCATCTACTCGCCCCGCCCGGGGACCTTCTC
CCTCCCTCCCTCCGCCCCGCCCTCCCCTCCGCCCTCCTCCTCCGCCTGGG
GCGCCGCAGCGGCCCTGGAGGACGTGGTTGGCTCGTCCTACACCCTACGT
CCCACCACCCAACGTCTTCCTTTCCCCGCTTCCTCCCTTCCTTCCTCCTC
CCTCCGCCCGCCCCTCCCCTTGTCCAAACTCCTCTTCTCGGCCACCGTCA
CGACCAACCCTCAGAAACTCGCCCGTCTCCACCTTAGCTTTCCTCGGTAC
TTCTCCGTTCACGGGCATATCCTCGACCCGCCTCCCTCCCACGCCCTAGG
GGGGGACGAGGACGAGCCCCCCGTAGGCAGCGGCCTGCCCTCTACCTTGC
GGGAGGACGTGGTGCCCTGTACCAGCCAGAATAAACCCCTCCTCCTCCTT
GCCCTCCTTCTCCGGGAGCTCAGGGCCTTCGCCTCCTCCCCGCCTATTCC
CCCTGCCTCAGGCCCGCCCTTGGTCCTCGTCTTTACCTCCTCCCTCGACT
CGACCCATCGCCTGAGCCGACTGCTTCAACTCTGCACCGCCACCCTCCAG
GTTCCCGAGAACTCCTTCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCGCCCTTCGACAGGTAGCAGCATCGTCGGAGAATTTTCCTCCT
CCCTGTCTCAACCGCAACGGGCCGCCTTATTGCAGCGATGCCTGGGAGCC
GCACCGGGGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGG
CGGGGTGCGGGTCCTGGTGGCCTCGGACGGGATGGCCAGGGGCATCGACC
TCCCCAACGTGAGCGCGGTCATCAACTACGACACTCCCCGTCAAGTCAGC
ACCTACATCCACCGCGTCGGGCGCACAGCTCGGGCGGGGAGGGAGGGCCG
GAGCTTCACTTTTTTGAAGCGGGGCCAAGAGAAAGAGTTCGAACGGCTTC
GGAGAGCGGTTGGGGACGGGGGCAAATGGCGAGAGGTGGGGAGGATCACG
GCGGGGAAGTTGGGGCCGTTGGAGCCGTTTCTTCCGGGGTACAAGAAGGC
GTTGCGGGGGCTGAAAGAGGTGATGGGGTGGGAGAAGGGGGGGAGGTTGA
AGACTACGGAGGGGATGAATGAGGGGCTGGTGCGACAGATGTTGCGGATG
GACGCGGGCCTGGGCGGGAACGCGGCGGGCCAAGGGAAGGAGGGGGAGGA
AGCTGGGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGAACGAGGAGGGGG
AGGAGGAGGAGGAGGAGGAGGAGGAAGGAGAGGGCGCCACCTGA

protein sequence of rna7813

>rna7813-protein ID=rna7813-protein|Name=rna7813|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MASEAGACQTRNVGNYDDDEEEEKEIPPLDEGDIALLKTYGLGPYTTSIK
KREEDIKNLQEKVKELIGIKESDSGLSLPSQWDLVSDKQMMQEEQPLQVA
RCTKIINPGQDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRTK
YSIQIPLPPKIDPTVSLMTVEDKPDVTYDEVGGAKDAAL

mRNA from alignment at CM002474.1:39150..40213+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7813 ID=rna7813|Name=rna7813|organism=Nannochloropsis gaditana|type=mRNA|length=1064bp|location=Sequence derived from alignment at CM002474.1:39150..40213+ (Nannochloropsis gaditana)
ATGGCAAGTGAAGCAGGTGCATGCCAAACCCGAAATGTGGGAAActacga
cgacgatgaagaggaggagaaggagatccCGCCcctggacgagggggacA
TCGCCTTGCTGAAGACATACGGATTGGGACCGTACACGACCAGCATCAAG
AAACGCGAGGAGGATATCAAGAATTTACAGGTCCGTGTGAAGGAGGTTCG
GGACGGATTTGTAGTGGCTTCttgaagggaggcggaggtggacaCGGACC
GTACGCCTCGGTCCTTGCGGCTCAGCCGTCTCTCCCGATGCTGACTTCCT
CCGCACGTACTTGCACCATCTCACGTCGGCAATTTACCACAGGAGAAAGT
GAAAGAGCTGATAGGGATCAAGGAAAGTGACagcggcctctccctcccat
cccaaTGGGACCTGGTCTCTGACAAGCAGATGATGCAGGAGGAGCAACCA
TTGCAGGTAGGGAAACGGGGGGCGgcatgggggaggacagggaagggtaa
acagaaaggaaagagcatGCAGAGCTaggggacggaagggacggaaggga
aggggacgcaATGAGCTgatgttccctccctccctcccttcccccttcag
gTGGCCCGATGCACCAAGATTATCAATCCGGGGCAGGACGACGCCAAATA
CGTGATCAATGTGAAGCAAATCGCCAAGTTTGTGGTGGGCTTGGGCGACA
AGGTCTCTCCCACGGACATTGAGGAGGGCATGCGCGTTGGCGTGGACCGC
ACCAAGTACTCCATTCAGGtcgccaccccctccttcccgccctccctccc
gccctccttcctttccttctcctgctttccTGCCCGGTAGTCTTGGGGCT
CTTGGATGCttatcctccttttcccttcgtctctccctccctccctccct
cgcccagatcccccttccccccaagaTCGACCCGACCGTCTCCCTTatga
cggtggaggacaagCCGGACGTCACCTACGACGAGGTGGGCGGGGCGAAG
GACGCGTTGGAGAAActgagggaggtggtggagctgcccctcctccaccc
ggaGCGCTTTGTGA

Coding sequence (CDS) from alignment at CM002474.1:39150..40213+

>rna7813 ID=rna7813|Name=rna7813|organism=Nannochloropsis gaditana|type=CDS|length=2850bp|location=Sequence derived from alignment at CM002474.1:39150..40213+ (Nannochloropsis gaditana)
ATGGCAAGTGAAGCAGGTGCATGCCAAACCCGAAATGTGGGAAActacga
cgacgatgaagaggaggagaaggagatccCGCCcctggacgagggggacA
TCGCCTTGCTGAAGACATACGGATTGGGACCGTACACGACCAGCATCAAG
AAACGCGAGGAGGATATCAAGAATTTACAGGAGAAAGTGAAAGAGCTGAT
AGGGATCAAGGAAAGTGACagcggcctctccctcccatcccaaTGGGACC
TGGTCTCTGACAAGCAGATGATGCAGGAGGAGCAACCATTGCAGgTGGCC
CGATGCACCAAGATTATCAATCCGGGGCAGGACGACGCCAAATACGTGAT
CAATGTGAAGCAAATCGCCAAGTTTGTGGTGGGCTTGGGCGACAAGGTCT
CTCCCACGGACATTGAGGAGGGCATGCGCGTTGGCGTGGACCGCACCAAG
TACTCCATTCAGatcccccttccccccaagaTCGACCCGACCGTCTCCCT
TatgacggtggaggacaagCCGGACGTCACCTACGACGAGGTGGGCGGGG
CGAAGGACGCCGCTTTGTGAATGGCAAGTGAAGCAGGTGCATGCCAAACC
CGAAATGTGGGAAActacgacgacgatgaagaggaggagaaggagatccC
GCCcctggacgagggggacATCGCCTTGCTGAAGACATACGGATTGGGAC
CGTACACGACCAGCATCAAGAAACGCGAGGAGGATATCAAGAATTTACAG
GAGAAAGTGAAAGAGCTGATAGGGATCAAGGAAAGTGACagcggcctctc
cctcccatcccaaTGGGACCTGGTCTCTGACAAGCAGATGATGCAGGAGG
AGCAACCATTGCAGgTGGCCCGATGCACCAAGATTATCAATCCGGGGCAG
GACGACGCCAAATACGTGATCAATGTGAAGCAAATCGCCAAGTTTGTGGT
GGGCTTGGGCGACAAGGTCTCTCCCACGGACATTGAGGAGGGCATGCGCG
TTGGCGTGGACCGCACCAAGTACTCCATTCAGatcccccttccccccaag
aTCGACCCGACCGTCTCCCTTatgacggtggaggacaagCCGGACGTCAC
CTACGACGAGGTGGGCGGGGCGAAGGACGCCGCTTTGTGAATGGCAAGTG
AAGCAGGTGCATGCCAAACCCGAAATGTGGGAAActacgacgacgatgaa
gaggaggagaaggagatccCGCCcctggacgagggggacATCGCCTTGCT
GAAGACATACGGATTGGGACCGTACACGACCAGCATCAAGAAACGCGAGG
AGGATATCAAGAATTTACAGGAGAAAGTGAAAGAGCTGATAGGGATCAAG
GAAAGTGACagcggcctctccctcccatcccaaTGGGACCTGGTCTCTGA
CAAGCAGATGATGCAGGAGGAGCAACCATTGCAGgTGGCCCGATGCACCA
AGATTATCAATCCGGGGCAGGACGACGCCAAATACGTGATCAATGTGAAG
CAAATCGCCAAGTTTGTGGTGGGCTTGGGCGACAAGGTCTCTCCCACGGA
CATTGAGGAGGGCATGCGCGTTGGCGTGGACCGCACCAAGTACTCCATTC
AGatcccccttccccccaagaTCGACCCGACCGTCTCCCTTatgacggtg
gaggacaagCCGGACGTCACCTACGACGAGGTGGGCGGGGCGAAGGACGC
CGCTTTGTGAATGGCAAGTGAAGCAGGTGCATGCCAAACCCGAAATGTGG
GAAActacgacgacgatgaagaggaggagaaggagatccCGCCcctggac
gagggggacATCGCCTTGCTGAAGACATACGGATTGGGACCGTACACGAC
CAGCATCAAGAAACGCGAGGAGGATATCAAGAATTTACAGGAGAAAGTGA
AAGAGCTGATAGGGATCAAGGAAAGTGACagcggcctctccctcccatcc
caaTGGGACCTGGTCTCTGACAAGCAGATGATGCAGGAGGAGCAACCATT
GCAGgTGGCCCGATGCACCAAGATTATCAATCCGGGGCAGGACGACGCCA
AATACGTGATCAATGTGAAGCAAATCGCCAAGTTTGTGGTGGGCTTGGGC
GACAAGGTCTCTCCCACGGACATTGAGGAGGGCATGCGCGTTGGCGTGGA
CCGCACCAAGTACTCCATTCAGatcccccttccccccaagaTCGACCCGA
CCGTCTCCCTTatgacggtggaggacaagCCGGACGTCACCTACGACGAG
GTGGGCGGGGCGAAGGACGCCGCTTTGTGAATGGCAAGTGAAGCAGGTGC
ATGCCAAACCCGAAATGTGGGAAActacgacgacgatgaagaggaggaga
aggagatccCGCCcctggacgagggggacATCGCCTTGCTGAAGACATAC
GGATTGGGACCGTACACGACCAGCATCAAGAAACGCGAGGAGGATATCAA
GAATTTACAGGAGAAAGTGAAAGAGCTGATAGGGATCAAGGAAAGTGACa
gcggcctctccctcccatcccaaTGGGACCTGGTCTCTGACAAGCAGATG
ATGCAGGAGGAGCAACCATTGCAGgTGGCCCGATGCACCAAGATTATCAA
TCCGGGGCAGGACGACGCCAAATACGTGATCAATGTGAAGCAAATCGCCA
AGTTTGTGGTGGGCTTGGGCGACAAGGTCTCTCCCACGGACATTGAGGAG
GGCATGCGCGTTGGCGTGGACCGCACCAAGTACTCCATTCAGatccccct
tccccccaagaTCGACCCGACCGTCTCCCTTatgacggtggaggacaagC
CGGACGTCACCTACGACGAGGTGGGCGGGGCGAAGGACGCCGCTTTGTGA

Synonyms

Publications