rna78, rna78 (mRNA) Nannochloropsis gaditana

Overview
Namerna78
Unique Namerna78
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length913
Alignment locationCM002455.1:219724..220281 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100033g2.8402.mrna
Orig protein idgnl|cribi|Naga_100033g2.8402
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:219724..220281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100033g2gene76Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30563.1cds78Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna78rna78-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna78 ID=rna78|Name=rna78|organism=Nannochloropsis gaditana|type=mRNA|length=913bp
ATGGAGAACAGGGCCCATGTCTCCCTAGACCCGTCGCTTCCGAACGGAGG
GGCGGACCATGGGGAGCCGCAGGGAGGGAAGGAGGGAAAGTCGGAAGGAG
GGGAGGGAGGGCGGGGGGGGGGGGAGGGGGTCGCTCAGGGAGAGGAGAGG
GACGAGCCCCCCGCCCTTGCCCTGGCGGCGCTCCCCCTCCTCCCCATCGC
ACCAAGGATGACCACGCTCTTGTACAGCCACGCCGTCCTTGTCGGTCATG
ACACCCCTGTCCTCTCCCTCGCCTACTCCAGCCACCTGGATCTGTGCGCC
TCGGGGGCCCGGGACGGCAGCGTGGTGGTGCACCGGGTTCAAAAAGCCAG
GTTTGTCCGCAGGCTCATGTATCCGGGTCGGCACCCCGTGGACCGCCTGC
ATTTGTGCGCCGAAACCGGCGTCCTCACTATGCACTCGCATGCCGACGCC
GGGCTCGCGGCCTTTTCCCTGAACGGATTCCCGCTTGCCCGGCTTCCTCA
GGGGAAAGAACGTCTGTCCGCGTTGTTGGCCAGCAAGGACGGGCAGTTTT
TGTTGACGGGCGGGGAGGAAGGGGTGCTTTCCGTGCGGCAGGGGCACAGC
TTGAAGCTCTTGCACACATTGCGGGTAGGCCATGGCCCCATCACCTCGCT
GGCTTTCACGCCGGACCACCAGTATATCCTGGTGGGGTGCGAAGACGGGA
GCTTTTCCGTCGTGGCCGACCCTCTGAGTCGGTTGCAGATGTTGCATCGT
GTATTAAGCCGGACGTTTTTTGGAGTGATATAAAGCATGAGGGACATCGA
AAGGACAAACGGACGGAGCAAGCTGTGCAGGCTCCACCATTGCATTGTAC
GAAAGTAAAGCATTTGTGCAGGTATGTAATCTTCCACATAAAGAAAAGCA
TTGTTTTGATAAA
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protein sequence of rna78

>rna78-protein ID=rna78-protein|Name=rna78|organism=Nannochloropsis gaditana|type=polypeptide|length=77bp
MQTVFKVQIMYRNDVIRGFQSFFGTARLHSCQVPSDIELRPYTQYKLSGD
ENAKSVHRSSRTFSNQSLSPLLYEHSI
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mRNA from alignment at CM002455.1:219724..220281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna78 ID=rna78|Name=rna78|organism=Nannochloropsis gaditana|type=mRNA|length=558bp|location=Sequence derived from alignment at CM002455.1:219724..220281- (Nannochloropsis gaditana)
TAACATGCCAATTGCACATATGCACGTATGTACCGGATGAAAATGCGATA
GCCCAACCCGTCACAATCTGCCGCACAGGGACGGTGACCACAATTCAGCT
CAAATAAAAAGAGCAACTTCTAGTCAGTGCCTTGCTTGCTTCAAGCCAGA
AGGCGCGAGAAGGACTAGGGCGGCCTTCCTTTCTAATTATGATGGATCAT
TTCATAATTGAACAATGCAAACCGTTTTTAAAGTGCAGATTATGTACAGA
AATGACGTGATACGTGGATTCCAGTCATTTTTCGGGACTGCCCGGTTGCA
TAGCTGCCAAGTGCCATCCGACATTGAGCTTCGTCCATACACTCAGTATA
AGCTTTCGGGGGATGAGAACGCCAAATCGGTTCATCGGAGCTCAAGGACA
TTCTCGAATCAAAGTTTAAGCCCTTTGCTGTATGAGCACAGTATCTGAAA
ATGGTGACGAAGGGACATGTGTGCGTTGGATGGCAGACAATGATGTAATC
ATCGTGAACTTTGAGGCAATCTTAGCACCGATGGCAAAAAAAACGATGGG
AAAATACC
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Coding sequence (CDS) from alignment at CM002455.1:219724..220281-

>rna78 ID=rna78|Name=rna78|organism=Nannochloropsis gaditana|type=CDS|length=234bp|location=Sequence derived from alignment at CM002455.1:219724..220281- (Nannochloropsis gaditana)
ATGCAAACCGTTTTTAAAGTGCAGATTATGTACAGAAATGACGTGATACG
TGGATTCCAGTCATTTTTCGGGACTGCCCGGTTGCATAGCTGCCAAGTGC
CATCCGACATTGAGCTTCGTCCATACACTCAGTATAAGCTTTCGGGGGAT
GAGAACGCCAAATCGGTTCATCGGAGCTCAAGGACATTCTCGAATCAAAG
TTTAAGCCCTTTGCTGTATGAGCACAGTATCTGA
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Synonyms
Publications