rna7790, rna7790 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7790
Unique Name	rna7790
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1322
Alignment location	CM002473.1:389474..390356 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100764g1.10537.mrna
Orig protein id	gnl\|cribi\|Naga_100764g1.10537
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:389474..390356 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100764g1	gene7546	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22906.1	cds7769	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7790	rna7790-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:389474..390356-
coding sequence from alignment at CM002473.1:389474..390356-

mRNA sequence

>rna7790 ID=rna7790|Name=rna7790|organism=Nannochloropsis gaditana|type=mRNA|length=1322bp
TTCTAAGTATGATTAAGTACACTGAAAAGTGAAGATGGTCAGTGAGGAAT
GAGTAGAAGTACAAGGGGATCGTGTGCCGCTCCTATACGCTTTGTGGTAT
GGGCCCAATCTAGGGTCTTCAGGCTGCACCCCTCAGAGCAGAATCTTCAG
CACCACGTTGTACTGTGACAAGACGCAGTGCACAACAGATAAGTGCCCAG
TTGAATTTCTATCGTTTCAAGTCTTTGCAATGCATTCCATCGAAAAGAGA
TGAGATGCATGCGTTCACCGGGAAATACAGGACACACCAGTCGGAGCGAA
CAGTGTCCCACAGGCAATCCCAGACCAACGGAACTACCCCCCCCTTCTCC
TGAAATGATAAGTTCTCACTATGATAGTCGCCCCTTTCAAAGAGTCGAGG
CCCTCTACGTATGATGCACTACACTGAAGCGTGAAGGTAGTGAGTGAGGT
ATGCATGAAATCACAGGGGCATTATGTACCGATCTTATACGGTTGGTGGT
ACTGATACGGAACTACCCTCACCTTCAAAAAGTTCTCTGCTGTGCCGGCA
TGGTAAAGTCTCGAAGATGCAAGTCTTATTCCTGAAGCGATACGTCCATA
CTATGACAAACGCCACATTTGACCAGCCAGAACCTTTTATGTCTCTTATA
CCTATGACAATACGTTCTCAATATGACAAACACGACTTGTGATGAACCGA
AACTTTTGTACATGTTATATTACGATATATCACTATGACAAGACGTCCTC
ACCATGACACTTTCAGCTAAACTATTTTCTGAAGCGCAGCACTGGTGCAT
GTGGAACTGGGAGAGCAGGAGGTCTTAGGAAGAATTTAGCTTCAGGGAAC
GGGGGTGCTGGGAAATAGAGAAGGAGTGTGCCGTCGTTCGTCCTACCCTT
CTTCCTCTCCTTGAAGTGACGGTAAACGGGAGAGCTGGAGAGAGGGAAAG
AAGGGAGAAAGGGAGGAAGGAAGGAAGAAAGAGTAGGGCTAAAAACTGGA
CATGCGCGAAGGATTGAGAGGGCTACAGGCGGGGCCATACATCGTGGATA
GGAAGGAAGGAAAAAGCAAAAGAGAAGGAAAGGAGCTCTGCAGTCTTGGG
TAGTTGATAGCTCTCAGTGTTAGTACTTAGAGAGAGGCATTCGTGGAATA
CATCGGAAACAAGCAATACCTAAAGTGGACACACACACACAACTAGAAAT
TTTGAGATTATACCACAAAATGATTTTTTTCGATGTCCCTCCCCCTTCTC
CGTGTCTTGTATATGCAATACCTCCATATCTCCTTTTCCTTAGATTCGAT
GTCTGCTTGGCTCTATCCTCTC

protein sequence of rna7790

>rna7790-protein ID=rna7790-protein|Name=rna7790|organism=Nannochloropsis gaditana|type=polypeptide|length=109bp
HSQAHSPYAHASRPSSTRRRSGSDSSDGSSGAGHSTDSEDMRAFQEEEEE
EEGKEEGGRGRRREVDFLLLSTGGTCWTMSLRERGEGGIGCAEAVKGDRA
KEETSLRER

mRNA from alignment at CM002473.1:389474..390356-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7790 ID=rna7790|Name=rna7790|organism=Nannochloropsis gaditana|type=mRNA|length=883bp|location=Sequence derived from alignment at CM002473.1:389474..390356- (Nannochloropsis gaditana)
CTCACTCTCAGGCCCACTCGCCTTACGCCCATGCATCACGGCCCTCCAGC
ACCCGACGTCGGAGTGGAAGCGACAGCAGCGACGGCAGCAGTGGTGCTGG
CCACAGTACTGACAGCGAGGATATGCGAGCCTTCCAAGAGGAGGAGGAGG
AGGAGGAGGGGAAGGAGGAGGGGGGGAGGGGGAGAAGGCGGGAAGTAGAT
TTCCTCCTCCTGTCTACTGGCGGGACGTGTTGGACAATGAGTCTTAGGGA
AAGAGGGGAGGGAGGTATTGGATGTGCAGAGGCCGTGAAGGGGGATAGAG
CTAAAGAGGAAACAAGTCTGAGAGAACGATAGGGAGGAGGTATTGCATGT
ACAGATGCCGTAAAAGAGGATAGAGCCAAGCAGACATCAATTTTTCGGGG
AAATAGGGGAGGAGGTATTGCATATACAGATATCTGAAGGAGGATAGAGC
CAATTAGACAAGTCTTAGGGAAAGAAGGGGAGGAGGAATTGCATATACGG
ATGCCTTGAGAGAGGATAGAGCCAAGCAGACATCGAATCTAAGGAAAAGG
AGATATGGAGGTATTGCATATACAAGACACGGAGAAGGGGGAGGGACATC
GAAAAAAATCATTTTGTGGTATAATCTCAAAATTTCTAGTTGTGTGTGTG
TGTCCACTTTAGGTATTGCTTGTTTCCGATGTATTCCACGAATGCCTCTC
TCTAAGTACTAACACTGAGAGCTATCAACTACCCAAGACTGCAGAGCTCC
TTTCCTTCTCTTTTGCTTTTTCCTTCCTTCCTATCCACGATGTATGGCCC
CGCCTGTAGCCCTCTCAATCCTTCGCGCATGTCCAGTTTTTAGCCCTACT
CTTTCTTCCTTCCTTCCTCCCTTTCTCCCTTCT

Coding sequence (CDS) from alignment at CM002473.1:389474..390356-

>rna7790 ID=rna7790|Name=rna7790|organism=Nannochloropsis gaditana|type=CDS|length=330bp|location=Sequence derived from alignment at CM002473.1:389474..390356- (Nannochloropsis gaditana)
CACTCTCAGGCCCACTCGCCTTACGCCCATGCATCACGGCCCTCCAGCAC
CCGACGTCGGAGTGGAAGCGACAGCAGCGACGGCAGCAGTGGTGCTGGCC
ACAGTACTGACAGCGAGGATATGCGAGCCTTCCAAGAGGAGGAGGAGGAG
GAGGAGGGGAAGGAGGAGGGGGGGAGGGGGAGAAGGCGGGAAGTAGATTT
CCTCCTCCTGTCTACTGGCGGGACGTGTTGGACAATGAGTCTTAGGGAAA
GAGGGGAGGGAGGTATTGGATGTGCAGAGGCCGTGAAGGGGGATAGAGCT
AAAGAGGAAACAAGTCTGAGAGAACGATAG

Synonyms

Publications