rna7789, rna7789 (mRNA) Nannochloropsis gaditana

Overview
Namerna7789
Unique Namerna7789
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1584
Alignment locationCM002473.1:388526..389847 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100764g2.10538.mrna
Orig protein idgnl|cribi|Naga_100764g2.10538
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:388526..389847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100764g2gene7545Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7789rna7789-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22907.1cds7768Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7789 ID=rna7789|Name=rna7789|organism=Nannochloropsis gaditana|type=mRNA|length=1584bp
ATGCTGTGCACAAAGATGAGGACGAAGCCGCTTTTCTTTCTAGTTGGCTT
GCTGGCCCTGAGCATTACAAGTGCCGCACCTGCGTTTATGTACGGAATCG
ATGGCTTCAATGAGATTGTTGAATACGATCCTGTTAACAAAGTCACGAGA
GTTGTTGAGGAGACAGATTTGAACCGGCGCGAAGGAAGCAATGCATTTGC
CTTTGACGAGACCAGGAACCAAATGTTTTGGCTCTATCGCGGCGATAAGA
GCGGTGGTCCCAATCTTGCCGGCTTGTACTATTGGGATCAGGTCACCGGA
GCCATTGACCGTATCTCAAGCCAAGCACAATCCTGGGACAATCAAAGATT
CCCGCAAAATGCGGCTTTCTACCGCGATCCCAGCACTGGCAATTCATATT
TCGTTTGGGTCACTCAAGGCGGGAGCACGGTCAATTTTCTCCCCATCACT
TATGATATATCCGGCAATCCTATTGGAGTTGAAACCAATATCCAACGAAT
TATTACGGGCCCTGATTTCAGTCCTGACTTTATGACTTTTGGCGACATTG
CCATCAAGACCAGCACCGACATGTTATATTTGGCAACAGGAACAGGAGGG
AAATTCGCTAAGATTGACCTCGACGACGCATTCGAGCAGCCCACGCTTCC
TTACACAGAGATCAAGACGGGCAATCTTCCTCTCCAGATTGCATTTGACT
GCGAAGAGGAAATCTTGTACGGTCAGCAACTCGTCCGCAGCACCACAACT
GTCAGTGACAATTGGTACACCATCGACCTGGAGACTGGCGTGGCGACATC
GATTCCTGATTACTCGACTACAGGCCGATTATCAGCACTAGATCTAGGTG
GATCAGCGTGCTCTGCGTCGCCTCAGACAACAAGTTCCCACGTCGTCGGG
ACCAACGCCCTTCCCGAATCCCACTGCCTCCCCAACCATGAGTCCTACCG
GCAACCCGACAGCGGCACCGACATCGGCTCCGACAGCACCTCCAACAACT
ATACCAACCCCGAGTCCGACTTCCCCCTTACCATTTTGCCGGGAGTGCGC
TTTGCAAAACACTGCTTGCAAGGATACTGGAGCTGTGCAATCCAGATCCC
TGAGCCTGGGTCGACCACTTTTCCTCTGCTGCCTCCTTGTGACCCTCGTT
TCAAATACAAGCAAGCCGCGCGCAAAAGGGTGGTTATCAGGGCCCGAAAG
CCCAAGACCACTCTGTCCACTAGGATTCGAGTGACAACGTACAACAAGAG
ATCTCTCCCCAACATCTTTCTGGACCTTCCCTTTGGAATCGAGTTTGTGA
GCGCAAAGGGACCGAGCGCAAAGACAGCCGACATCCAAGTGGATGACTTT
GCCGACGAGATTTTCTTTTTGACGTCGCCATTACAAAAGTCAAAAAGGGT
GGTATCGTACAAGGTCAAGATCAACGTGACAGAAGAGTTTGAAGACGATA
CTTTCAACATCGACTACGGACTTTTTGATGGAAGCATAGCAAATGCTACG
TGCCGGACCGAGTTTCCACCGCTCCAGGTCTCCGTCATTCGCAAAGGAGA
GACAACGAAGATGAAGAAGGGGAAATCGATGTGA
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protein sequence of rna7789

>rna7789-protein ID=rna7789-protein|Name=rna7789|organism=Nannochloropsis gaditana|type=polypeptide|length=72bp
MYRSYTVGGTDTELPSPSKSSLLCRHGKVSKMQVLFLKRYVHTMTNATFD
QPEPFMSLIPMTIRSQYDKHDL
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mRNA from alignment at CM002473.1:388526..389847+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7789 ID=rna7789|Name=rna7789|organism=Nannochloropsis gaditana|type=mRNA|length=1322bp|location=Sequence derived from alignment at CM002473.1:388526..389847+ (Nannochloropsis gaditana)
TTCTAAGTATGATTAAGTACACTGAAAAGTGAAGATGGTCAGTGAGGAAT
GAGTAGAAGTACAAGGGGATCGTGTGCCGCTCCTATACGCTTTGTGGTAT
GGGCCCAATCTAGGGTCTTCAGGCTGCACCCCTCAGAGCAGAATCTTCAG
CACCACGTTGTACTGTGACAAGACGCAGTGCACAACAGATAAGTGCCCAG
TTGAATTTCTATCGTTTCAAGTCTTTGCAATGCATTCCATCGAAAAGAGA
TGAGATGCATGCGTTCACCGGGAAATACAGGACACACCAGTCGGAGCGAA
CAGTGTCCCACAGGCAATCCCAGACCAACGGAActaccccccccttctcc
tgaAATGATAAGTTCTCACTATGATAGTCGCCCCTTTCAAAGAGTCGAGG
CCCTCTACGTATGATGCACTACACTGAAGCGTGAAGGTAGTGAGTGAGGT
ATGCATGAAATCACAGGGGCATTATGTACCGATCTTATACGGTTGGTGGT
ACTGATACGGAACTACCCTCACCTTCAAAAAGTTCTCTGCTGTGCCGGCA
TGGTAAAGTCTCGAAGATGCAAGTCTTATTCCTGAAGCGATACGTCCATA
CTATGACAAACGCCACATTTGACCAGCCAGAACCTTTTATGTCTCTTATA
CCTATGACAATACGTTCTCAATATGACAAACACGACTTGTGATGAACCGA
AACTTTTGTACATGTTATATTACGATATATCACTATGACAAGACGTCCTC
ACCATGACACTTTCAGCTAAACTATTTTCTGAAGCGCAGCACTGGTGCAT
GTGGAACTGGGAGAGCAGGAGGTCTTAGGAAGAATTTAGCTTCAGGGAAC
GGGGGTGCTGGGAAATAGAGAAGGAGTGTGCCGTCGTTCGTCctaccctt
cttcctctccttgaagtGACGGTAAACGGGAGagctggagagagggaaag
aagggagaaagggaggaaggaaggaagaaagagtaGGGCTAAAAACTGGA
CATGCGCGAAGGATTGAGAGGGCTACAGGCGGGGCCATACATCGTGgata
ggaaggaaggaaaaagcaaaagagaaggaaaggagctCTGCAGTCTTGGG
TAGTTGATAGCTCTCAGTGTTAGTACTTAGAGAGAGGCATTCGTGGAATA
CATCGGAAACAAGCAATACCTAAAGTGGACACACACACACAACTAGAAAT
TTTGAGATTATACCACAAAATGATTTTTTTCgatgtccctcccccttctc
cgtgTCTTGTATATGCAATACCTCCATATCTCCTTTTCCTTAGATTCGAT
GTCTGCTTGGCTCTATCCTCTC
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Coding sequence (CDS) from alignment at CM002473.1:388526..389847+

>rna7789 ID=rna7789|Name=rna7789|organism=Nannochloropsis gaditana|type=CDS|length=219bp|location=Sequence derived from alignment at CM002473.1:388526..389847+ (Nannochloropsis gaditana)
ATGTACCGATCTTATACGGTTGGTGGTACTGATACGGAACTACCCTCACC
TTCAAAAAGTTCTCTGCTGTGCCGGCATGGTAAAGTCTCGAAGATGCAAG
TCTTATTCCTGAAGCGATACGTCCATACTATGACAAACGCCACATTTGAC
CAGCCAGAACCTTTTATGTCTCTTATACCTATGACAATACGTTCTCAATA
TGACAAACACGACTTGTGA
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Synonyms
Publications