rna7783, rna7783 (mRNA) Nannochloropsis gaditana

Overview
Namerna7783
Unique Namerna7783
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length860
Alignment locationCM002473.1:371740..372329 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101284g1.10104.mrna
Orig protein idgnl|cribi|Naga_101284g1.10104
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:371740..372329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101284g1gene7539Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7783rna7783-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22912.1cds7762Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7783 ID=rna7783|Name=rna7783|organism=Nannochloropsis gaditana|type=mRNA|length=860bp
ACACGTAGGTCATACGCAGGGCTTCCCTCGGGGTACCTGTCCTTTTGTCC
GCTTGATGCGGCAGGCCCTCCCTCCCTACTCATCGCGACTACTCTTCCTG
GGCTCCTGCACTCTGGTCGTGTCCATCCCCCTTGTCCTCCTGGCCTTACG
CCTTCCTTCGACATCCACATTTCTCCAACGCACGGTCGACCGCGTGTCGG
GACGCATCAAGGAAAAAAAACAGCGCCCGCGGGCACTGCCCCCGGCGTCT
TTACATGTGCATGTCGCCTTGAAAGGCGTTACAGTCCGGGAAAGCGATAT
CGGACTCCTGCGATCCTTGCTCCATCCCTCCATCACCCTCACGCATGGCG
ACGAGGTGGACCCCCTCACTCAAGTCCTGGTGGCGAATTTCCCTTCCAAA
GAGCTTTTGGCCCGCCTCGCGCCTACCCTGCGCGCCCTTATCTTCCCTTT
CGCCGGAGTGCCCCTCCCTTTCCTCGCGCACTGCGCCTCCGTCCACCCCC
ACCTCTCCGTCCACAACCTTCACCACAACGCTCCCCCTACCGCGGAAATG
GGCCTGACCCTCCTCTTGGCGGCGGCGAAGTGCCTCCTGCCCGCGGACGC
CCAGCTCCGTCGCGGCGATTGGAGGGCCGGGGGAGGGCCGTCGTTGAACG
TGACCATGCGCGAAGAGGCCGCAGGTGTGTGCATACCCGGATCAGCCCGG
CGGGGCGCATGAACAAGCTATCCCTCTTGACTACTGAGACTCCGTTTCTT
CCCTCCTGTGTATGGACAAGCTCCCTCTTGACTATTGAGGCTCCATCCCT
TCCCTCCTTCGTTCTTCCCCCGTTCCATTACCCTCCCCTCCTTCGTTCTT
CCCCCCTACC
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protein sequence of rna7783

>rna7783-protein ID=rna7783-protein|Name=rna7783|organism=Nannochloropsis gaditana|type=polypeptide|length=170bp
MWEPLSSPSSGREEGGRSSNEETESEQEEGLLASSPPPCSGLVHVTREGT
RVGATGMTKALQTPGVAADQESVGKRVAEATTSNIASTLETSKENREVDT
GKVRRRQRKQSQETKGPQEAVGPGGKKSNKRPRQTQKNETDKRDDAPSSP
YLVDNSNITTVEATHRDPDN
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mRNA from alignment at CM002473.1:371740..372329+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7783 ID=rna7783|Name=rna7783|organism=Nannochloropsis gaditana|type=mRNA|length=590bp|location=Sequence derived from alignment at CM002473.1:371740..372329+ (Nannochloropsis gaditana)
ATGTGGGAGCCgctttcttcgccttcgtcaggtcgagaggagggaggcag
gagcagcaatgaggagacggagagtgagcaggaggaagggcttcTAGcat
catcgcctccaccatgtTCAGGATTGGTCCATGTCACACGAGAGGGGACA
CGTGTTGGAGCCACAGGCATGACGAAGGCGCTACAGACCCCTGGGGTCGC
CGCAGATCAGGAGTCGGTGGGAAAACGAGTGGCAGAGGCAACGACGTCGA
ATATCGCTTCGACACTGGAAACATCCAAAGAAAACAGAGAGGTTGATACC
GGGAAAGTAAGGAGACGCCAGCGGAAACAGAGCCAAGAAACAAAGGGGCC
GCAGGAAGCTGTGGGTccgggcgggaagaagagcaacaAGCGCCCACGGC
AAACCCAAAAAAACGAAACGGACAAAAGAGACGATGCACCTAGCTCCCCA
TACTTGGTAGATAACAGTAACATCACTACCGTCGAGGCCACGCATCGCGA
CCCAGACGTGGGGACGGATTGCCCCGCCGAGgcagggaagcgaggagatA
TGTCAGTGCCCGCCACGACCAAAGCGCGCCCAAGAACTAA
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Coding sequence (CDS) from alignment at CM002473.1:371740..372329+

>rna7783 ID=rna7783|Name=rna7783|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002473.1:371740..372329+ (Nannochloropsis gaditana)
ATGTGGGAGCCgctttcttcgccttcgtcaggtcgagaggagggaggcag
gagcagcaatgaggagacggagagtgagcaggaggaagggcttcTAGcat
catcgcctccaccatgtTCAGGATTGGTCCATGTCACACGAGAGGGGACA
CGTGTTGGAGCCACAGGCATGACGAAGGCGCTACAGACCCCTGGGGTCGC
CGCAGATCAGGAGTCGGTGGGAAAACGAGTGGCAGAGGCAACGACGTCGA
ATATCGCTTCGACACTGGAAACATCCAAAGAAAACAGAGAGGTTGATACC
GGGAAAGTAAGGAGACGCCAGCGGAAACAGAGCCAAGAAACAAAGGGGCC
GCAGGAAGCTGTGGGTccgggcgggaagaagagcaacaAGCGCCCACGGC
AAACCCAAAAAAACGAAACGGACAAAAGAGACGATGCACCTAGCTCCCCA
TACTTGGTAGATAACAGTAACATCACTACCGTCGAGGCCACGCATCGCGA
CCCAGACAACTAAATGTGGGAGCCgctttcttcgccttcgtcaggtcgag
aggagggaggcaggagcagcaatgaggagacggagagtgagcaggaggaa
gggcttcTAGcatcatcgcctccaccatgtTCAGGATTGGTCCATGTCAC
ACGAGAGGGGACACGTGTTGGAGCCACAGGCATGACGAAGGCGCTACAGA
CCCCTGGGGTCGCCGCAGATCAGGAGTCGGTGGGAAAACGAGTGGCAGAG
GCAACGACGTCGAATATCGCTTCGACACTGGAAACATCCAAAGAAAACAG
AGAGGTTGATACCGGGAAAGTAAGGAGACGCCAGCGGAAACAGAGCCAAG
AAACAAAGGGGCCGCAGGAAGCTGTGGGTccgggcgggaagaagagcaac
aAGCGCCCACGGCAAACCCAAAAAAACGAAACGGACAAAAGAGACGATGC
ACCTAGCTCCCCATACTTGGTAGATAACAGTAACATCACTACCGTCGAGG
CCACGCATCGCGACCCAGACAACTAA
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Synonyms
Publications