rna7776, rna7776 (mRNA) Nannochloropsis gaditana

Overview
Namerna7776
Unique Namerna7776
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1331
Alignment locationCM002473.1:349013..349485 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101679g1.3632.mrna
Orig protein idgnl|cribi|Naga_101679g1.3632
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:349013..349485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101679g1gene7532Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7776rna7776-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22918.1cds7755Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7776 ID=rna7776|Name=rna7776|organism=Nannochloropsis gaditana|type=mRNA|length=1331bp
CCTCCCGTCCGTAGCAACTTCGAAAACGCCCGTTCCTACTGGGGCGACTG
GATGCCGACCTTCCCTTACTATTTGGACGAGCTCTCCACCGTTAAATTCG
CCGCCAATGTGCCCTACCCCAAGGGCCATCCCCGCGTGAGCCTGAAGAAG
TACTCGGTTTGCCCGCACGACGTGGAAGTGGTGAGCACGGAGGAGGTGCC
GACGGAGGACGCGGTGGCGGCCAACACCCCTGACCTTCCCCTCCCTCCCC
CCCTCCCTCTGGAGGGGGGTCCGGCCGTGGACGTGCCGGCGGAAGGGGAG
GACGGGGGGGAGGCCCCGGAGGAGGACGCGGGGGAGGTCCCGGAGGAGGA
CGTGGAGGAGGGCGAGGTGGAGGGTGGGGTGGAGGGCGGGGAGGACGGAG
AGGAGGGCGAGGTGCCAGAGGAGGGCCTGCCAATGCCCGTGGAGGCGGCC
GCGCGTCGTCTGCGGGCGGCATGAGAAGGAGGAAGGGAAAGAGGGAGGAA
GGGGGGGAAGAAGGGCGGGAGAAGCACGAGGCAGTTTTAGGAAGTTTGTG
TAGTTCTTGGGACAGGGACACCGGGTCGAACGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAAAGAAACCTCTCGCCGCGGCCGCCGCTTTC
CCGCGCCTTGTCGACTCCTGTGTGGCTGGGTCTTGGGGGATCAGGAGTCG
AGCGAGAGGAAGGAAGAGGTCAAGTTGATGCCTCCGCATACATTCCCCCT
TTCCCCCCCCCGAGACCATTCTCTCGCCTCCCAAAAAAACAGAAAAAAAA
ATGGGATGATTCACCGCGCAAGGGGGCTTGTGTATGATAGGATAGGATGT
AGCTGTAAGGGAAGGCCGAGACCGACCTCACCATCGTCCCGTTGGGGAGA
AGAAGGGGTGGGAAGACTTGAGTGCCTACATTAGTCTGAGGATCCCATCG
CATCCTTCCTCCTTTTCTAAGGAGAGAGGAGGGGGCGTCGGTGTCATCGC
CCAGGGAGGAGTCGAGGTCGAGACGGAGGGAGGGAGGGAGGGAAAGGCAA
AAGTGAGGGCGAAGTAGTATTGTCTCTTTGAAATTCGTCGGGGGGAAGAG
AGAGAGAGGAGATGTGGCATCGATTGCAAAGAAGGAACAACAGCCTCCCT
GACACGTTCGCGCGAGCGCATCCCTCGGGGGTGCTTGAAGCTTCCTGAAG
TTGTACATCCTCGTATCCTCGGGAGGCTTGCCGTCTCCTTAACTCCCGTG
CGAGCCGTAGGATGGATGCAGTGAACAGTTTTCTTCCCCCTTCCCCAGCC
TCCTCCAGCACGATTGACCCCCCCTTTCCCT
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protein sequence of rna7776

>rna7776-protein ID=rna7776-protein|Name=rna7776|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MPRGRLLVAVTHSNQRLLARGGETGGGTGGRNGPGAVTPGGDETVDGLDQ
KIRVPAVQRSERHVVPCAWVENDGEVVQEPLGPLNSNLNSNGGANEKRTR
RLPLKGGRLAE
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mRNA from alignment at CM002473.1:349013..349485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7776 ID=rna7776|Name=rna7776|organism=Nannochloropsis gaditana|type=mRNA|length=473bp|location=Sequence derived from alignment at CM002473.1:349013..349485- (Nannochloropsis gaditana)
ATGCCCAGAGGAAGACTGTTGGTCGCCGTTACTCATTCAAACCAGCGGTT
ACTCGCACGCGGAGGCGAAACGGGCGGGGGAACTGGTGGCAGAAACGGTC
CAGGAGCCGTTACCCCTGGTGGGGACGAAACGGTTGACGGCCTTGACCAG
AAAATACGCGTCCCCGCGGTGCAGAGAAGTGAGCGCCATGTCGTGTCTGC
GTGGATGAGGGAGGGCGGGAGGGAGGGCGGGGGGGAGGGAGGAAGGGAGG
GAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGA
GGAAGGGACAGGGTCTTCCCTCCTACCTTAGCCCCTGCGCATGGGTGGAG
AACGACGGCGAAGTTGTCCAAGAACCACTCGGCCCTTTAAATTCAAATTT
GAATTCAAACGGTGGAGCAAACGAGAAGCGAACAAGAAGGTTGCCCTTAA
AAGGTGGTAGGCTCGCGGAATAG
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Coding sequence (CDS) from alignment at CM002473.1:349013..349485-

>rna7776 ID=rna7776|Name=rna7776|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002473.1:349013..349485- (Nannochloropsis gaditana)
CCCCTGCGCATGGGTGGAGAACGACGGCGAAGTTGTCCAAGAACCACTCG
GCCCTTTAAATTCAAATTTGAATTCAAACGGTGGAGCAAACGAGAAGCGA
ACAAGAAGGTTGCCCTTAAAAGGTGGTAGGCTCGCGGAATAGATGCCCAG
AGGAAGACTGTTGGTCGCCGTTACTCATTCAAACCAGCGGTTACTCGCAC
GCGGAGGCGAAACGGGCGGGGGAACTGGTGGCAGAAACGGTCCAGGAGCC
GTTACCCCTGGTGGGGACGAAACGGTTGACGGCCTTGACCAGAAAATACG
CGTCCCCGCGGTGCAGAGAAGTGAGCGCCATGTCGTCCCCTGCGCATGGG
TGGAGAACGACGGCGAAGTTGTCCAAGAACCACTCGGCCCTTTAAATTCA
AATTTGAATTCAAACGGTGGAGCAAACGAGAAGCGAACAAGAAGGTTGCC
CTTAAAAGGTGGTAGGCTCGCGGAATAGATGCCCAGAGGAAGACTGTTGG
TCGCCGTTACTCATTCAAACCAGCGGTTACTCGCACGCGGAGGCGAAACG
GGCGGGGGAACTGGTGGCAGAAACGGTCCAGGAGCCGTTACCCCTGGTGG
GGACGAAACGGTTGACGGCCTTGACCAGAAAATACGCGTCCCCGCGGTGC
AGAGAAGTGAGCGCCATGTCGT
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Synonyms
Publications