rna7775, rna7775 (mRNA) Nannochloropsis gaditana

Overview
Namerna7775
Unique Namerna7775
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1083
Alignment locationCM002473.1:347574..348904 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101679g2.3633.mrna
Orig protein idgnl|cribi|Naga_101679g2.3633
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:347574..348904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101679g2gene7531Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7775rna7775-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22919.1cds7754Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7775 ID=rna7775|Name=rna7775|organism=Nannochloropsis gaditana|type=mRNA|length=1083bp
ATGTACTACAGGCACGGACACACACGCACGTGGGAAGCATCCCGTGGAAT
AGTTTCCGCAGAACAAATGCGGACGACCGCACCGCTCAGTCCCTCATCCC
CATCCCATGCTTCTTTCCTCCTTCCCTTGCTCTTCCTTGTCCATGTCTGC
AGGCAAAAAAAAAAAATGGTTCCTGCTTCCAAAGCTCTCAAGGGCGCCTT
GGTCGCAGCATTGGCCTCTGCCAGCCTCGGTCTTGCCGCCCCGGTAGACC
CGACGACGCCGGTCGCCCCCCTGGAAGCCACCACCGCCATTGCGCCGGGG
GAATGCATGTCCTACCAAAGTGGGGACGCGAACGCCGTCCTTTGCGTGCA
GGAGGCCAAGCTGACCGCGCCCAACAACCTTTTGCTGGCCGGTTTCCTCT
TCAACAACGGGACCGTCGAGCTCTGCGACGTCAAGCTCGCGCCCTTGAAC
GCCCCGGGGGTCACTGCCTTTTGGCCCGACTGGGCGAGCGACGCCTCCTA
CGAGAAATACTTCAACTTGAAGCAGATGACCTCGGTGGGTCTGACAGCCA
CCCCCAACGCGGACGGGAGCTTGCCCTCTGTGGAAATCGTCAGCCTCCGG
GCCTGTGACCCCACCAAGGACGCCGCGGTCCCGGTCGCGGCGGAGGGCGG
GGTGGAGGTGCCGGCGGAGGGCGGGGTGGAGGTGCCGATGGAGGACGGGG
TCGCCACCGTCTTCCCGTTGGAGACTCGGAAGATTGCCTTGGAGGACTCC
CCCATGATGCCCCCCGTGAAGAAGGAGGTGCTGGGTGAGGAGCCGACGGG
GGCCGGGCCCGAGATCGTGCCCAACGCCCGTCGGCTGGCCAGCGACAAGC
GAGGAGGGCGCGGAGCTTCTGCTGGCGGGCGATTGTGGCATTTATCAGAA
CGGCACCGTGAGCCTGACCTTGTGCTTGGAAAGCGTCCTGGCTCCCACCC
AAAGCATGGCCATCTACCACGGTTTCCTCTACAACAACGGCACGGCCCCT
GCCTGCGACGTCCGCCTTCGCCCGGTCAATGCCCCCGAACTGATCCAGCT
GTGGCCCGATTGGTCGCCTACCTCGGCCTATGA
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protein sequence of rna7775

>rna7775-protein ID=rna7775-protein|Name=rna7775|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
PPVRSNFENARSYWGDWMPTFPYYLDELSTVKFAANVPYPKGHPRVSLKK
YSVCPHDVEVVSTEEVPTEDAVAANTPDLPLPPPLPLEGGPAVDVPAEGE
DGGEAPEEDAGEVPEEDVEEGEVEGGVEGGEDGEEGEVPEEGLPMPVEAA
ARRLRAA
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mRNA from alignment at CM002473.1:347574..348904+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7775 ID=rna7775|Name=rna7775|organism=Nannochloropsis gaditana|type=mRNA|length=1331bp|location=Sequence derived from alignment at CM002473.1:347574..348904+ (Nannochloropsis gaditana)
CCTCCCGTCCGTAGCAACTTCGAAAACGCCCGTTCCTACTGGGGCGACTG
GATGCCGACCTTCCCTTACTATTTGGACGAGCTCTCCACCGTTAAATTCG
CCGCCAATGTGCCCTACCCCAAGGGCCATCCCCGCGTGAGCCTGAAGAAG
TACTCGGTTTGCCCGCACGACGTGGAAGTGGTGAGCACGGAGGAGGTGCC
gacggaggacgcggtggcggCCAACACCCctgaccttcccctccctcccc
ccctccctctggagGGGGGTCCGGCCGTGGACGTgccggcggaaggggag
gacgggggggaggccccggaggaggacgcgggggaggtcccggaggagga
cgtggaggagggcgaggtggagggtggggtggagggcggggaggacggag
aggagggcgaggtgccAGAGGAGGGCCTGCCAATGcccgtggaggcggcc
gcgcgTCGTCTGCGGGCGgcatgagaaggaggaagggaaagagggaggaa
gggggggaagaagggcgggagaagcACGAGGCAGTTTTAGGAAGTTTGTG
TAGTTCTTGGGACAGGGACACCGGGTcgaacggagggagggagggaggga
gggagggagggagggagggaaagaaacctctcgccgcggccgccgcttTC
CCGCGCCTTGTCGACTCCTGTGTGGCTGGGTCTTGGGGGATCAGGAGTcg
agcgagaggaaggaagaggtcaAGTTGATGCCTCCGCATAcattccccct
ttcccccccccgagacCATTCTCTCGCCTCCCAAAAAaacagaaaaaaaa
atgggATGATTCACCGCGCAAGGGGGCTTGTGTATGATAGGATAGGATGT
AGCTGTAAGGGAAGGCCGAGACCGACCTCACCATCGTCCCGttggggaga
agaaggggtgggaagacTTGAGTGCCTACATTAGTCTGAGGATCCCATcg
catccttcctccttttctaaggagagaggagggggcgtcGGTGTCATCGC
CCAGGGAGGAGTCGAGgtcgagacggagggagggagggagggaaaggcaa
aagTGAGGGCGAAGTAGTATTGTCTCTTTGAAATTcgtcggggggaagag
agagagaggagatgtGGCATCGATTGCAAAGAAGGAACAACAGCCTCCCT
GACACGTTCGCGCGAGCGCATCCCTCGGGGGTGCTTGAAGCTTCCTGAAG
TTGTACATCCTCGTATCCTCGGGAGGCTTGCCGTCTCCTTAACTCCCGTG
CGAGCCGTAGGATGGATGCAGTGAACagttttcttcccccttccccagcc
tcctccagcacgattgaccccccctttccct
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Coding sequence (CDS) from alignment at CM002473.1:347574..348904+

>rna7775 ID=rna7775|Name=rna7775|organism=Nannochloropsis gaditana|type=CDS|length=474bp|location=Sequence derived from alignment at CM002473.1:347574..348904+ (Nannochloropsis gaditana)
CCTCCCGTCCGTAGCAACTTCGAAAACGCCCGTTCCTACTGGGGCGACTG
GATGCCGACCTTCCCTTACTATTTGGACGAGCTCTCCACCGTTAAATTCG
CCGCCAATGTGCCCTACCCCAAGGGCCATCCCCGCGTGAGCCTGAAGAAG
TACTCGGTTTGCCCGCACGACGTGGAAGTGGTGAGCACGGAGGAGGTGCC
gacggaggacgcggtggcggCCAACACCCctgaccttcccctccctcccc
ccctccctctggagGGGGGTCCGGCCGTGGACGTgccggcggaaggggag
gacgggggggaggccccggaggaggacgcgggggaggtcccggaggagga
cgtggaggagggcgaggtggagggtggggtggagggcggggaggacggag
aggagggcgaggtgccAGAGGAGGGCCTGCCAATGcccgtggaggcggcc
gcgcgTCGTCTGCGGGCGgcatga
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Synonyms
Publications