rna7772, rna7772 (mRNA) Nannochloropsis gaditana

Overview
Namerna7772
Unique Namerna7772
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length525
Alignment locationCM002473.1:341451..341884 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101396g1.10751.mrna
Orig protein idgnl|cribi|Naga_101396g1.10751
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:341451..341884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101396g1gene7528Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7772rna7772-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22922.1cds7751Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7772 ID=rna7772|Name=rna7772|organism=Nannochloropsis gaditana|type=mRNA|length=525bp
TTGCTCTTTATTTCACCTTTTTTGCAACAATATCCTGTCTCTCATCTTTT
ACGACTCTATGCTCCTTCCCTCACTTGGTTTTCCGCCGCCTACACTTTCT
CTTCCCGATCTGCTTCTCCCTACCACCTTCCCTTCCTCCCTCCCTCCCTC
CCTTCCTCCCTTTCTCCCTCCGCGGGCGCCGAACAAATAACAGAAAGCAT
ACAACCACCACATCCGCTTCTGTCGTTCAACCTGATGGCGGGCGGGGTTT
TGCAATTGCTGTTTGTCCACGAAGGCTTAGGTAGCGATGAGGAAGGCGCC
TCGGAGGAAGAGCGGGCTGATCGACTTTTATACGCGTGGCCAGACTCCCT
ACCCCTCTCATCCCACCTCCACCTCCTCCGCGTGGCCGAAAGCCTCCTTG
CCTTCACGCATCGGTTTTCCTCCTTCTCCTCCTCCTCCTCCTCCTCCGTT
GACGTGCCTGAGGGGGACGTGGAAAGCGTCGCCTTGGGTGTGAGTAGTAG
GAAAGGAAAGCCAACATGGAGGGAG
back to top

protein sequence of rna7772

>rna7772-protein ID=rna7772-protein|Name=rna7772|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MTMRDYTEDADPTVGGAGCRPGLSRSNIRRRRQHASFRALSASAITLTLA
SMLISLPLAFSSTSPPPSLPSFLP
back to top

mRNA from alignment at CM002473.1:341451..341884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7772 ID=rna7772|Name=rna7772|organism=Nannochloropsis gaditana|type=mRNA|length=434bp|location=Sequence derived from alignment at CM002473.1:341451..341884+ (Nannochloropsis gaditana)
ATGACCATGAGGGACTACACGGAAGACGCAGACCCCACTgtcgggggggc
ggggtgcCGCCCAGGGCTCAGCAGGAGCAACATTAGGAGAAGACGACAGC
ACGCTTCTTTCCGTGCATTAAGCGCGTCGGCAATCACGTTGACGTTGGCC
AGTATGCTCATCAGGtttgctttccctttcccttcctttcgtcatccctc
tttcctttctctttttcggcttcctcctcttcctccctttccctccctcc
ctccctccctccctccctctttgtttcgccctctccccccccttcttttg
cccgcttttttcctttttctgtcCCCTTTTTGGCTGACCATGGCGTGATG
CTCGCTCTTTCTCATGACCAAAGCCTTCCTCTGGCCTtttcctcaacctc
cccccctccctccctcccttccttccttccttga
back to top

Coding sequence (CDS) from alignment at CM002473.1:341451..341884+

>rna7772 ID=rna7772|Name=rna7772|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002473.1:341451..341884+ (Nannochloropsis gaditana)
ATGACCATGAGGGACTACACGGAAGACGCAGACCCCACTgtcgggggggc
ggggtgcCGCCCAGGGCTCAGCAGGAGCAACATTAGGAGAAGACGACAGC
ACGCTTCTTTCCGTGCATTAAGCGCGTCGGCAATCACGTTGACGTTGGCC
AGTATGCTCATCAGCCTTCCTCTGGCCTtttcctcaacctccccccctcc
ctccctcccttccttccttccttgaATGACCATGAGGGACTACACGGAAG
ACGCAGACCCCACTgtcgggggggcggggtgcCGCCCAGGGCTCAGCAGG
AGCAACATTAGGAGAAGACGACAGCACGCTTCTTTCCGTGCATTAAGCGC
GTCGGCAATCACGTTGACGTTGGCCAGTATGCTCATCAGCCTTCCTCTGG
CCTtttcctcaacctccccccctccctccctcccttccttccttccttga
back to top
Synonyms
Publications