rna7768, rna7768 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7768
Unique Name	rna7768
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2710
Alignment location	CM002473.1:325093..326233 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101300g1.5093.mrna
Orig protein id	gnl\|cribi\|Naga_101300g1.5093
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:325093..326233 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101300g1	gene7523	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7768	rna7768-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22926.1	cds7747	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:325093..326233+
coding sequence from alignment at CM002473.1:325093..326233+

mRNA sequence

>rna7768 ID=rna7768|Name=rna7768|organism=Nannochloropsis gaditana|type=mRNA|length=2710bp
CAAAATCACCAATATTACACTCGCGGCATCTATCTTACTCCCTTAACCTT
TTTCTTATCGCAGCTCGGCAGGTTATACGGAGTTGCCATCCAGGTGGCCG
CAATCGCATCTGCCAGCAGGGGAACGGCCTAGCTTTGAAAAATCCATCGC
GGACCCCAAGCACCGCACAGTGGGCTTCGACCGTCGGCAACCTTCCCATG
GCGTCGATGACAGAGATGCCGCGTCGACGCTCCATCGAATTCATGCCAAT
GGACCACGAAATTGACGACTCGCATTTGGGCACCAAATACGTGGAAAACC
GTGACGACGCGGCAGGCTGGCAGAGTCTCGGAGAGCGGATCCCCATGGAG
GAAGAAGACCAGGCGTCGCCCCAGCTGCCTCCCCCCGCTTCGGGATACCC
AAAATGCCAACAAGCCGAGCCCAACCACCAGCAGCAACAGCACGTGGAAG
CAAGCAGGACATGGGGGGGACACCAGGCCCCCGCTACGCGCCCTGCTTCT
TGCGCTTTTTCCTCCCGCCCTCCTTTTCCCCCCACCCGTCCGTCCACCAC
GGCCCATATGAACGCCTCCATCTACCATCGCGCCACGGGGCCCTTGCCCC
CCCCTCCCCCCGCGTCGTACCCTGTCCTCTATCCCTACCCGTCCCACGTC
CACACCCAACGCTTGCCTTCTCAGCACGCGCCTTATATCCGGACGGCTCG
GGGATTGACGGAACCGGCTGGGGAACGACGGTGGAACCCGATCTTGGGAG
GCTATGTTCGTGCCGCCCACGCAGAAGCGGACATGGCGGAAGAAATTCGG
GAACGGGACGTGGCCAATTTCGAGAAGGGCATGGCCCGGGTGATGGCGCG
GGAAGGGGAATACGACCCCGTCTTTTGGCGGCACCGGCTTTCCAAGGAGG
AAGCTCGCTATGTCCCTCCCCGCCGAGGGCAGCAGGTGGTGCACCCTGTT
CCAGGCCCGACTCTGGGTGTGAGCCTACGGCTGGACGGGGAGGGCGGGGG
GGAGGGCGGGGGGGAGGGTGGGTGGCCCGGATTCCGGGCCACCCGCCTGA
TGAACGACAAGTGGCATCGAGACGATCATGTCCGCAAGCTCTTCGACCCC
ACCGACCCCCTGGGGCGCTCAGCCCACGGCGACACCTTCCGCCCTTGCCC
GAACCGCCAGATCGACCACCGCCCGACCTCCCTCCCGCCCTCCACCACCA
CCCTCCGCGGGGACCACGTGGGCTTCCTCCTCCGGGATGACCCGAGCCCG
CTCATCCCACAGACGGAAAGTCTTCCCCGCCGGGGCAAGGCCGGCGTAGC
TTTCCATAACACCCTCCGATCGCCCACGGACGTGTGCGTCGGGAATTTGA
TCAACGCCGAAAAAGCCCGACGCCTCCCCGTGCCCAACCTCTTCCCCGTC
CAGAACCCCAAGTCTCGCTACGGCCTGTTCATGAAATCCGGGGAGGAAGT
TCGGGCCGCCCTCCATGCCCATGCGGCCCTCGACCCGCCGTCCTTCTACG
CCACATACACCCCCGCCCCAGGAAATCCCGTCCTGGCGCCTCGTCCCGAC
GCCCACGCCCATCCTTACCGACGCCCGCAGTACTTGGATGTCCGCCAAGA
GCTTCAGGCGCACCTGGCAGGCCTCCAGCATGCTTCCCCTTCCTCCGTCC
CGCCCTCCCCCGCGACCTCTCCCGTGCCCTCCACCCCGTCCTCCTCCGCT
TCGGGCCACTGCCTCCGGCCCATTGACCGGACTTTACCTTCTCCCCCTCC
TCCCCCTCCCCTTACCACCCCTCCCCGCGCCCCTTCCTCCCGCCCGTCCT
CCTCCCCTTCCTCCTTCCATTCTTCCCCGTGTGGAGACGGAGCGATGGAC
GACATGTGGCAGGCAGAGGCCTTCTTGAGCGGAGGCAGGGGCGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGGTGACACCC
TGGGCGGGTCTGTAGCGGCGTCGGTGGGCTCCGGCATGCAGGGAGGGAGG
GGATGAAGGCATCCGTCGTTGATGATGCGGAGGGAGGAAGACAAAGGAGG
AAGGAGGAGAAGGGGGCCTGAATGGCTGGTCATTGGGAATGCAGGAAGAA
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGAGAGAGAGACGAAGAGG
GGCCTCCCCAAGGAAGGAAGGGCATACGGCGCCAAGAAGAAAGGGAGAAA
GTATCAGTGCGGACGTCGTGAGAGAGAGAGATTCGATTTCAGGCGGTCCA
CAGACGCTGACATGCACCGAGTAAGCATGCATATTAATCCTTGTATGTTC
GCGGCGTAATCCATTAATTTTGTTTCTTTTCGGGGGGCGTGAAGATGCTT
GAAGCGCCCTCACGCCCTCCGAAGAGGAAAGGGGGGGAAAGGAGGGAGAA
ACGGCGGGAAAGGAGGTGTTGGTTTTTGTAAAAGCCCGGTCATGGAGGGA
GGGAGAGGAGCCAGAGGGGGGGCAGGGGCAGATAGAGAGAGAGCAAGCTA
GCGAGGACGTTCATAGGCGATACAATATTACATTTACATACACGTGGTAG
ACAATACAATATGACATATCCATGTACGGGGACGGAGGAAAGCTCTGTCA
GTGCGGACGGAGAGAGGGAAACAGGGGGCTCTGAGAGCGAGAAACACCCT
TGGGTGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGTAGTAGA

protein sequence of rna7768

>rna7768-protein ID=rna7768-protein|Name=rna7768|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
HGRGLAAAPVPPPPKDRYGSPGNGPGNGPDPRRPPSSPRSPRSASRRSPL
QDLGPDPPRGLLRPGREAASNGCNGRNGSESIALAPYLSAPRSRLDVLPS
GLTRGPSTGLDGKKSPREGVEETVLVTVTNRRATVPNGRPRSRLGNPAGR
EEEGGAGEEGERVEEGGGSSSSFASSFVASLASAVSDDLVSLANGWPATA
LEKRKFEIQNVASFPVRRQRQLLDEGLLVIVRNFLEGPLPPSRPPPLPPT
RSPRPASRGPGRDTGIFPPPLRPPLHLINLFLKLLLILPIQHRDLTASEL
PQAVLRVMMEGGGRAGAREGGKMGGRQGAWRNGCWKPGAGL

mRNA from alignment at CM002473.1:325093..326233+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7768 ID=rna7768|Name=rna7768|organism=Nannochloropsis gaditana|type=mRNA|length=1141bp|location=Sequence derived from alignment at CM002473.1:325093..326233+ (Nannochloropsis gaditana)
CACGGGCGCGGTCTGGCCGCCGCTCCcgtcccaccaccacccaaGGACCG
TTACGGGAGTCCCGGTAACGGTCCCGGTAACGGTCCCGAcccccgtcgtc
ctccctcctcgccgcgcTCGCCCAGGTCCGCAAGCAGAAGGAGCCCCCTC
CAAGACCTGGGGCCCGACCCTCCACGcggcctccttcgtcccggCAGGGA
AGCCGCAAGTAACGGCTGTAACGGCCGTAACGGTTCGGAAAGCATTGCCT
TGGCACCTTACCTCTCTGCTCCCCGGAGCCGCCTGGATGTGCTTCCCAGT
GGTCTTACCAGAGGGCCGTCCACTGGCCTTGACGGGAAGAAAAGTCCAcg
cgagggcgtggaggaaacgGTTTTGGTAACGGTTACCAACCGGCGTGCAA
CCGTCCCCAACGGTCGGCCCCGGTCACGACTAGGGAAcccggcggggagg
gaggaggaaggaggggcgggggaggagggggagagagtggaggagggagg
agggagctcttcctccttcgcttcgtCCTTTGTGGCCTCTTTGGCTTCGG
CCGTTTCGGATGACCTCGTGTCCCTGGCCAACGGTTGGCCGGCAACCGCC
TTGGAGAAACGGAAATTTGAAATTCAAAATGTGGCATCCTTTCCGGTGCG
CCGTCAACGCCAACTGCTGGATGAGGGACTGTTGGTGATCGTCCGCAACT
TTTTGGAgggacccctccctccctcccgccctccccccctccctcccacc
cgttctccccgccccgccagcCGAGGGCCGGGACGGGACACgggcatttt
tcctcctcccctgcgtcccccccttcatttgatcaacctcttcctcaagc
tcctcctcatccttcctATCCAGCACCGGGATCTAACGGCCTCGGAGCTC
CCCCAGGCGGTTTTGCGTGtgatgatggagggggggggaagggcgggagc
gagggagggagggaagatgggcgggaggcagggcgctTGGCGCAACGGTT
GCTGGAAGCCTGGAGCCGGTTTgtgatgggaagggaaggaggtggggggg
cggAGttaaagggggaggaggttgagggggcaggaagggcggcCTGCTCG
TTGCCCGTGTTCCGTCGGatgggatgaggagggagggaggg

Coding sequence (CDS) from alignment at CM002473.1:325093..326233+

>rna7768 ID=rna7768|Name=rna7768|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002473.1:325093..326233+ (Nannochloropsis gaditana)
CACGGGCGCGGTCTGGCCGCCGCTCCcgtcccaccaccacccaaGGACCG
TTACGGGAGTCCCGGTAACGGTCCCGGTAACGGTCCCGAcccccgtcgtc
ctccctcctcgccgcgcTCGCCCAGGTCCGCAAGCAGAAGGAGCCCCCTC
CAAGACCTGGGGCCCGACCCTCCACGcggcctccttcgtcccggCAGGGA
AGCCGCAAGTAACGGCTGTAACGGCCGTAACGGTTCGGAAAGCATTGCCT
TGGCACCTTACCTCTCTGCTCCCCGGAGCCGCCTGGATGTGCTTCCCAGT
GGTCTTACCAGAGGGCCGTCCACTGGCCTTGACGGGAAGAAAAGTCCAcg
cgagggcgtggaggaaacgGTTTTGGTAACGGTTACCAACCGGCGTGCAA
CCGTCCCCAACGGTCGGCCCCGGTCACGACTAGGGAAcccggcggggagg
gaggaggaaggaggggcgggggaggagggggagagagtggaggagggagg
agggagctcttcctccttcgcttcgtCCTTTGTGGCCTCTTTGGCTTCGG
CCGTTTCGGATGACCTCGTGTCCCTGGCCAACGGTTGGCCGGCAACCGCC
TTGGAGAAACGGAAATTTGAAATTCAAAATGTGGCATCCTTTCCGGTGCG
CCGTCAACGCCAACTGCTGGATGAGGGACTGTTGGTGATCGTCCGCAACT
TTTTGGAgggacccctccctccctcccgccctccccccctccctcccacc
cgttctccccgccccgccagcCGAGGGCCGGGACGGGACACgggcatttt
tcctcctcccctgcgtcccccccttcatttgatcaacctcttcctcaagc
tcctcctcatccttcctATCCAGCACCGGGATCTAACGGCCTCGGAGCTC
CCCCAGGCGGTTTTGCGTGtgatgatggagggggggggaagggcgggagc
gagggagggagggaagatgggcgggaggcagggcgctTGGCGCAACGGTT
GCTGGAAGCCTGGAGCCGGTTTgtga

Synonyms

Publications