rna7767, rna7767 (mRNA) Nannochloropsis gaditana

Overview
Namerna7767
Unique Namerna7767
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length775
Alignment locationCM002473.1:318595..321416 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101176g1.8471.mrna
Orig protein idgnl|cribi|Naga_101176g1.8471
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:318595..321416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101176g1gene7521Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22927.1cds7746Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7767rna7767-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7767 ID=rna7767|Name=rna7767|organism=Nannochloropsis gaditana|type=mRNA|length=775bp
ATGAAGGGAGGAGAGGAGGAAGGGATGGAAGCAGTGTTGAGGAAGGTGGC
GGGGTTGATAAGGCAAGTGGTGGGTGAAGGAGGAGGAGAAGACGGAAAAC
GAGACGGAGGAGCGAAAGGCGTCAGCGGCCCGGAGGTATTCCCTTCGCTT
TCCACGCAGTCAACGCCCCCACGGCCCAAAGACGCAGGAGAGCCCGGTGC
CCTCGAAGAAGCTCGACAGGCCCAGGCGGGCGAAGGAACGTGCTCCGCGC
CCTCCTCGCCCTCCCCCCCCCTCCACCTCGTTCCCCTCCTCGCCCTTGGC
TTGGATTCCCTCACCCTCGCCCACTTGAAAGCCCGGATCGAAGAGGAGTG
CCTCGGGCGGAGGGAAGGCGGGGGGGAGGGCCCGGGGGAGGGAGGCCAGG
CGGACGGATTCTTGCCGGAGGAGTATTTTTATCGGGAGGAAACGACGGGG
GGGCACGTGGCAGCGATGGTGTGGGCGATCCAGGGAGGGCGGGAGGAAGG
GCGGGGGGGGGGAGGGAGGGGGGGAGCCCCGAGGAAGCGTGGGAGTTGTA
CGAGGAAGCGTGCAAGGCGAATGGCGGGACGGAGGGGGGGCGGGCGGCCT
TGGAGCTGGAGATGATGATGGGGGCGAGGAGGAAGGAAGGAGGTGGGTGG
AAAGCGTGGATCCTCCAGACGAGTCCATGCTGTTTGCTCCTTCCTTGCTG
CCGCTAAGCAAGACGATTTTGAAGACCGAGCAATCGTTTCGAAAAGTAAA
ATAGTGATTCTCCTTGCATTCGATT
back to top

protein sequence of rna7767

>rna7767-protein ID=rna7767-protein|Name=rna7767|organism=Nannochloropsis gaditana|type=polypeptide|length=602bp
MASMTEMPRRRSIEFMPMDHEIDDSHLGTKYVENRDDAAGWQSLGERIPM
EEEDQASPQLPPPASGYPKCQQAEPNHQQQQHVEASRTWGGHQAPATRPA
SCAFSSRPPFPPTRPSTTAHMNASIYHRATGPLPPPPPASYPVLYPYPSH
VHTQRLPSQHAPYIRTARGLTEPAGERRWNPILGGYVRAAHAEADMAEEI
RERDVANFEKGMARVMAREGEYDPVFWRHRLSKEEARYVPPRRGQQVVHP
VPGPTLGVSLRLDGEGGGEGGGEGGWPGFRATRLMNDKWHRDDHVRKLFD
PTDPLGRSAHGDTFRPCPNRQIDHRPTSLPPSTTTLRGDHVGFLLRDDPS
PLIPQTESLPRRGKAGVAFHNTLRSPTDVCVGNLINAEKARRLPVPNLFP
VQNPKSRYGLFMKSGEEVRAALHAHAALDPPSFYATYTPAPGNPVLAPRP
DAHAHPYRRPQYLDVRQELQAHLAGLQHASPSSVPPSPATSPVPSTPSSS
ASGHCLRPIDRTLPSPPPPPPLTTPPRAPSSRPSSSPSSFHSSPCGDGAM
DDMWQAEAFLSGGRGEGGREGGREGGREGGMGDTLGGSVAASVGSGMQGG
RG
back to top

mRNA from alignment at CM002473.1:318595..321416-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7767 ID=rna7767|Name=rna7767|organism=Nannochloropsis gaditana|type=mRNA|length=2822bp|location=Sequence derived from alignment at CM002473.1:318595..321416- (Nannochloropsis gaditana)
CAAAATCACCAATATTACACTCGCGGCATCTATCTTACTCCCTTAACCTT
TTTCTTATCGCAGCTCGGCAGGTTATACGGAGTTGCCATCCAGGTGGCCG
CAATCGCATCTGCCAGCAGGGGAACGGCCTAGCTTTGAAAAGTAAGCAAA
GGGAAAATGGGCCGCGCAAACTCAAGGACTTGTGATTTTTTCTTGCCTTC
TCATTTTTATTCGACGTCTCAATACATGGCACGCATTTTCTTCATTTGTA
CAGATCCATCGCGGACCCCAAGCACCGCACAGTGGGCTTCGACCGTCGGC
AACCTTCCCATGGCGTCGATGACAGAGATGCCGCGTCGACGCTCCATCGA
ATTCATGCCAATGGACCACGAAATTGACGACTCGCATTTGGGCACCAAAT
ACGTGGAAAACCGTGACGACGCGGCAGGCTGGCAGAGTCTCGGAGAGCGG
ATCCCCATGGAGGAAGAAGACCAGGCGTCGCCCCAGCTGCCTCCCCCCGC
TTCGGGATACCCAAAATGCCAACAAGCCGAGCCCAACCACCAGCAGCAAC
AGCACGTGGAAGCAAGCAGGACATGGGGGGGACACCAGGCCCCCGCTACG
CGCCCTGCTTCTTGCGCTTTTTCCTCCCGCCCTCCTTTTCCCCCCACCCG
TCCGTCCACCACGGCCCATATGAACGCCTCCATCTACCATCGCGCCACGG
GGCCCTTGCCCCCCCCTCCCCCCGCGTCGTACCCTGTCCTCTATCCCTAC
CCGTCCCACGTCCACACCCAACGCTTGCCTTCTCAGCACGCGCCTTATAT
CCGGACGGCTCGGGGATTGACGGAACCGGCTGGGGAACGACGGTGGAACC
CGATCTTGGGAGGCTATGTTCGTGCCGCCCACGCAGAAGCGGACATGGCG
GAAGAAATTCGGGAACGGGACGTGGCCAATTTCGAGAAGGGCATGGCCCG
GGTGATGGCGCGGGAAGGGGAATACGACCCCGTCTTTTGGCGGCACCGGC
TTTCCAAGGAGGAAGCTCGCTATGTCCCTCCCCGCCGAGGGCAGCAGGTG
GTGCACCCTGTTCCAGGCCCGACTCTGGGTGTGAGCCTACGGCTGGACGG
GGAGGGCGGGGGGGAGGGCGGGGGGGAGGGTGGGTGGCCCGGATTCCGGG
CCACCCGCCTGATGAACGACAAGTGGCATCGAGACGATCATGTCCGCAAG
CTCTTCGACCCCACCGACCCCCTGGGGCGCTCAGCCCACGGCGACACCTT
CCGCCCTTGCCCGAACCGCCAGATCGACCACCGCCCGACCTCCCTCCCGC
CCTCCACCACCACCCTCCGCGGGGACCACGTGGGCTTCCTCCTCCGGGAT
GACCCGAGCCCGCTCATCCCACAGACGGAAAGTCTTCCCCGCCGGGGCAA
GGCCGGCGTAGCTTTCCATAACACCCTCCGATCGCCCACGGACGTGTGCG
TCGGGAATTTGATCAACGCCGAAAAAGCCCGACGCCTCCCCGTGCCCAAC
CTCTTCCCCGTCCAGAACCCCAAGTCTCGCTACGGCCTGTTCATGAAATC
CGGGGAGGAAGTTCGGGCCGCCCTCCATGCCCATGCGGCCCTCGACCCGC
CGTCCTTCTACGCCACATACACCCCCGCCCCAGGAAATCCCGTCCTGGCG
CCTCGTCCCGACGCCCACGCCCATCCTTACCGACGCCCGCAGTACTTGGA
TGTCCGCCAAGAGCTTCAGGCGCACCTGGCAGGCCTCCAGCATGCTTCCC
CTTCCTCCGTCCCGCCCTCCCCCGCGACCTCTCCCGTGCCCTCCACCCCG
TCCTCCTCCGCTTCGGGCCACTGCCTCCGGCCCATTGACCGGACTTTACC
TTCTCCCCCTCCTCCCCCTCCCCTTACCACCCCTCCCCGCGCCCCTTCCT
CCCGCCCGTCCTCCTCCCCTTCCTCCTTCCATTCTTCCCCGTGTGGAGAC
GGAGCGATGGACGACATGTGGCAGGCAGAGGCCTTCTTGAGCGGAGGCAG
GGGCGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
TGGGTGACACCCTGGGCGGGTCTGTAGCGGCGTCGGTGGGCTCCGGCATG
CAGGGAGGGAGGGGATGAAGGCATCCGTCGTTGATGATGCGGAGGGAGGA
AGACAAAGGAGGAAGGAGGAGAAGGGGGCCTGAATGGCTGGTCATTGGGA
ATGCAGGAAGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGAGAGA
GAGACGAAGAGGGGCCTCCCCAAGGAAGGAAGGGCATACGGCGCCAAGAA
GAAAGGGAGAAAGTATCAGTGCGGACGTCGTGAGAGAGAGAGATTCGATT
TCAGGCGGTCCACAGACGCTGACATGCACCGAGTAAGCATGCATATTAAT
CCTTGTATGTTCGCGGCGTAATCCATTAATTTTGTTTCTTTTCGGGGGGC
GTGAAGATGCTTGAAGCGCCCTCACGCCCTCCGAAGAGGAAAGGGGGGGA
AAGGAGGGAGAAACGGCGGGAAAGGAGGTGTTGGTTTTTGTAAAAGCCCG
GTCATGGAGGGAGGGAGAGGAGCCAGAGGGGGGGCAGGGGCAGATAGAGA
GAGAGCAAGCTAGCGAGGACGTTCATAGGCGATACAATATTACATTTACA
TACACGTGGTAGACAATACAATATGACATATCCATGTACGGGGACGGAGG
AAAGCTCTGTCAGTGCGGACGGAGAGAGGGAAACAGGGGGCTCTGAGAGC
GAGAAACACCCTTGGGTGTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGTAGTAGA
back to top

Coding sequence (CDS) from alignment at CM002473.1:318595..321416-

>rna7767 ID=rna7767|Name=rna7767|organism=Nannochloropsis gaditana|type=CDS|length=1809bp|location=Sequence derived from alignment at CM002473.1:318595..321416- (Nannochloropsis gaditana)
ATGGCGTCGATGACAGAGATGCCGCGTCGACGCTCCATCGAATTCATGCC
AATGGACCACGAAATTGACGACTCGCATTTGGGCACCAAATACGTGGAAA
ACCGTGACGACGCGGCAGGCTGGCAGAGTCTCGGAGAGCGGATCCCCATG
GAGGAAGAAGACCAGGCGTCGCCCCAGCTGCCTCCCCCCGCTTCGGGATA
CCCAAAATGCCAACAAGCCGAGCCCAACCACCAGCAGCAACAGCACGTGG
AAGCAAGCAGGACATGGGGGGGACACCAGGCCCCCGCTACGCGCCCTGCT
TCTTGCGCTTTTTCCTCCCGCCCTCCTTTTCCCCCCACCCGTCCGTCCAC
CACGGCCCATATGAACGCCTCCATCTACCATCGCGCCACGGGGCCCTTGC
CCCCCCCTCCCCCCGCGTCGTACCCTGTCCTCTATCCCTACCCGTCCCAC
GTCCACACCCAACGCTTGCCTTCTCAGCACGCGCCTTATATCCGGACGGC
TCGGGGATTGACGGAACCGGCTGGGGAACGACGGTGGAACCCGATCTTGG
GAGGCTATGTTCGTGCCGCCCACGCAGAAGCGGACATGGCGGAAGAAATT
CGGGAACGGGACGTGGCCAATTTCGAGAAGGGCATGGCCCGGGTGATGGC
GCGGGAAGGGGAATACGACCCCGTCTTTTGGCGGCACCGGCTTTCCAAGG
AGGAAGCTCGCTATGTCCCTCCCCGCCGAGGGCAGCAGGTGGTGCACCCT
GTTCCAGGCCCGACTCTGGGTGTGAGCCTACGGCTGGACGGGGAGGGCGG
GGGGGAGGGCGGGGGGGAGGGTGGGTGGCCCGGATTCCGGGCCACCCGCC
TGATGAACGACAAGTGGCATCGAGACGATCATGTCCGCAAGCTCTTCGAC
CCCACCGACCCCCTGGGGCGCTCAGCCCACGGCGACACCTTCCGCCCTTG
CCCGAACCGCCAGATCGACCACCGCCCGACCTCCCTCCCGCCCTCCACCA
CCACCCTCCGCGGGGACCACGTGGGCTTCCTCCTCCGGGATGACCCGAGC
CCGCTCATCCCACAGACGGAAAGTCTTCCCCGCCGGGGCAAGGCCGGCGT
AGCTTTCCATAACACCCTCCGATCGCCCACGGACGTGTGCGTCGGGAATT
TGATCAACGCCGAAAAAGCCCGACGCCTCCCCGTGCCCAACCTCTTCCCC
GTCCAGAACCCCAAGTCTCGCTACGGCCTGTTCATGAAATCCGGGGAGGA
AGTTCGGGCCGCCCTCCATGCCCATGCGGCCCTCGACCCGCCGTCCTTCT
ACGCCACATACACCCCCGCCCCAGGAAATCCCGTCCTGGCGCCTCGTCCC
GACGCCCACGCCCATCCTTACCGACGCCCGCAGTACTTGGATGTCCGCCA
AGAGCTTCAGGCGCACCTGGCAGGCCTCCAGCATGCTTCCCCTTCCTCCG
TCCCGCCCTCCCCCGCGACCTCTCCCGTGCCCTCCACCCCGTCCTCCTCC
GCTTCGGGCCACTGCCTCCGGCCCATTGACCGGACTTTACCTTCTCCCCC
TCCTCCCCCTCCCCTTACCACCCCTCCCCGCGCCCCTTCCTCCCGCCCGT
CCTCCTCCCCTTCCTCCTTCCATTCTTCCCCGTGTGGAGACGGAGCGATG
GACGACATGTGGCAGGCAGAGGCCTTCTTGAGCGGAGGCAGGGGCGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATGGGTGACA
CCCTGGGCGGGTCTGTAGCGGCGTCGGTGGGCTCCGGCATGCAGGGAGGG
AGGGGATGA
back to top
Synonyms
Publications