rna7766, rna7766 (mRNA) Nannochloropsis gaditana

Overview
Namerna7766
Unique Namerna7766
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1061
Alignment locationCM002473.1:313993..314767 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101391g1.10182.mrna
Orig protein idgnl|cribi|Naga_101391g1.10182
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:313993..314767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101391g1gene7520Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7766rna7766-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22928.1cds7745Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7766 ID=rna7766|Name=rna7766|organism=Nannochloropsis gaditana|type=mRNA|length=1061bp
GGGCAACGTCGTGCCCTAGGTAGGAGCGGAGGCGATGGCGGAGGGGGAGG
GGGAGGGGGGGGAGGAGGAGGAGGGAGAAGAAGGAAGCGCCGCCGTATCT
GCCACTCCCTCGCCTTGTCCTGTATGGCCCGTCCCGTCTGGGAGGAATTC
CAAGGGTGGATGGCGGCAGAGAAGGCACTCTCCCCCAGCACCTCTCACAG
TTACTCCAAGCGCGTGGCTCGTTTTTTGATAGATATGGAGGAAGGACGGG
AGCAGGCGGAGAAAGTGATGAATAGGGAAGGGGCGCGGGCATATGTGGAA
AGGAAGTGGGAGGTGGCGTCGGCAGTGGCAAGTTCGGCGTTGCGGGTGAA
AATGAACGCGTGGAACCATTTTTTGAACTACCTCGGGTTAGGGGGGGGGG
ATGGGAAGGAGGACGGGAAGGGGGGACAGGCAGGCGTGGGACGGAAGGAG
GAAGCCGACGGGGAGGATGGGGAGAGCGACGGGGTCGGTGATGGAGAGGG
CGTGGAGAAGCAGGGGGCCGCTTGAGCGGAGGGGCGAATTGGACGGGAGC
CAGCTGACGTGATGGGATTGGAGGGGGGGAGGGGAGAAGGTTCGGGAGGG
GAGGGGAGTGGAAGAGGGATGTGGCACCAAGAGGGCAGTGCATGCACCTG
CCCGCACTCCTGGTTTAAGGTGATGGGTGCAGAGAGGGTGGCAGTGATGA
AAATGGAAGAAATTGGGCGGTGGGAGATGTCTGCCCTCCAACCTCCCTTC
CTTAGGAGGTGCATTGGGCGCATATGGCGTGAAAAAAGAGGCTGGAGTCG
GCGGGAATCGAACAGAGGGAGCGAGGGGCGTGTCACTGTAGCCTATGCTC
TGTTCGACGAGATCAGAACCCTGACTACCACAAGCACAGCAATCTCTAAA
GTACTGAGAAACCAGATTGCGAGTGTGTGGACGTGATGCAACGAAGGACG
AAGGACACCATCAGGAATGATACCTCTCTGGTTGGATTTTGTTTTGTTGA
GTCCCCCTTTAATGACCACCTTTTTTTCTGGCGTTCATGTGGGACTGGTG
AAGGAAATCCC
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protein sequence of rna7766

>rna7766-protein ID=rna7766-protein|Name=rna7766|organism=Nannochloropsis gaditana|type=polypeptide|length=204bp
MKGGEEEGMEAVLRKVAGLIRQVVGEGGGEDGKRDGGAKGVSGPEVFPSL
STQSTPPRPKDAGEPGALEEARQAQAGEGTCSAPSSPSPPLHLVPLLALG
LDSLTLAHLKARIEEECLGRREGGGEGPGEGGQADGFLPEEYFYREETTG
GHVAAMVWAIQGGREEGRGGGGRGGAPRKRGSCTRKRARRMAGRRGGGRP
WSWR
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mRNA from alignment at CM002473.1:313993..314767+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7766 ID=rna7766|Name=rna7766|organism=Nannochloropsis gaditana|type=mRNA|length=775bp|location=Sequence derived from alignment at CM002473.1:313993..314767+ (Nannochloropsis gaditana)
atgaagggaggagaggaggaagggatggaagcaGTGTtgaggaaggtggc
gggGTTGATAAGGCAAGTGgtgggtgaaggaggaggagaagacggaaaac
gagacggaggagcgAAAGGCGTCAGCGGCCCGGAGGTATTCCCTTCGCTT
TCCACGCAGTCAACGCCCCCACGGCCCAAAGACGCAGGAGAGCCCGGTGC
CCTCGAAGAAGCTCGACAGGCCCAGGCGGGCGAAGGAACGTgctccgcgc
cctcctcgccctccccccccctccacctcgttcccctcctcgcccttggC
TTGGattccctcaccctcgcccACTTGAAAGCCCGGATCGAAGAGGAGTG
Cctcgggcggagggaaggcgggggggagggcccgggggagggaggccagg
cgGACGGATTCTTGCCGGAGGAGTATTTTTATCGGGAGGAAACGACGGGG
GGGCACGTGGCAGCGATGGTGTGGGCGAtccagggagggcgggaggaagg
gcggggggggggagggagggggggagcccCGAGGAAGCGTGGGAGTTGTA
CGAGGAAGCGTGCAAGGCGAatggcgggacggagggggggcgggcggcct
tggagctggagatgatgatgggggcgaggaggaaggaaggaggtgggtgg
AAAGCGTGGATCCTCCAGACGAGTCCATGCTGTttgctccttccttgctG
CCGCTAAGCAAGACGATTTTGAAGACCGAGCAATCGTTTCGAAAAGTAAA
ATAGTGATTCTCCTTGCATTCGATT
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Coding sequence (CDS) from alignment at CM002473.1:313993..314767+

>rna7766 ID=rna7766|Name=rna7766|organism=Nannochloropsis gaditana|type=CDS|length=615bp|location=Sequence derived from alignment at CM002473.1:313993..314767+ (Nannochloropsis gaditana)
atgaagggaggagaggaggaagggatggaagcaGTGTtgaggaaggtggc
gggGTTGATAAGGCAAGTGgtgggtgaaggaggaggagaagacggaaaac
gagacggaggagcgAAAGGCGTCAGCGGCCCGGAGGTATTCCCTTCGCTT
TCCACGCAGTCAACGCCCCCACGGCCCAAAGACGCAGGAGAGCCCGGTGC
CCTCGAAGAAGCTCGACAGGCCCAGGCGGGCGAAGGAACGTgctccgcgc
cctcctcgccctccccccccctccacctcgttcccctcctcgcccttggC
TTGGattccctcaccctcgcccACTTGAAAGCCCGGATCGAAGAGGAGTG
Cctcgggcggagggaaggcgggggggagggcccgggggagggaggccagg
cgGACGGATTCTTGCCGGAGGAGTATTTTTATCGGGAGGAAACGACGGGG
GGGCACGTGGCAGCGATGGTGTGGGCGAtccagggagggcgggaggaagg
gcggggggggggagggagggggggagcccCGAGGAAGCGTGGGAGTTGTA
CGAGGAAGCGTGCAAGGCGAatggcgggacggagggggggcgggcggcct
tggagctggagatga
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Synonyms
Publications