rna7762, rna7762 (mRNA) Nannochloropsis gaditana

Overview
Namerna7762
Unique Namerna7762
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length357
Alignment locationCM002473.1:296926..297280 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100461g2.9043.mrna
Orig protein idgnl|cribi|Naga_100461g2.9043
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:296926..297280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100461g2gene7516Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7762rna7762-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22931.1cds7741Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7762 ID=rna7762|Name=rna7762|organism=Nannochloropsis gaditana|type=mRNA|length=357bp
ATGACCGTTAAAGTAGGACCGTATTATGAGGTGTTTTGGGGAATCGAGGC
GGAGGATGAGCAGGGAGCACGAGCGACTTGGCGAGGCGCCTCTGACGCCA
TGACTTATGTACAGGCTGACGGCAGGTGGGGAGGGGAGAGGAGGGTGGCA
GGTAGCCTCCATCCTCTCCTTTTAACCTCCTGCGTCCCCGTTTTCCGTCC
TGCCGTCCTACTGCCTCTTCGTGGCTGGCACCAAGGACGATGGACAGGGG
ATCGGAGAGTGGCTGACGTCAAGAGGGAGACCTCTCCTTTCAAGGACCTT
CCTGGCCCGGGCCCCGGGAGGTCGGGGGCGGGGGGCAGGGCGGGAGGGCG
ATCTTGA
back to top

protein sequence of rna7762

>rna7762-protein ID=rna7762-protein|Name=rna7762|organism=Nannochloropsis gaditana|type=polypeptide|length=96bp
MLHVHHFFVPSYIHVIHLFYIRLYCHLRPFDLRFGGNGGQTNQVRVYTNQ
APLLKSALIPIYYGSDVTTTLHACSLWVLFLGIFLFFGGKTDTLTF
back to top

mRNA from alignment at CM002473.1:296926..297280+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7762 ID=rna7762|Name=rna7762|organism=Nannochloropsis gaditana|type=mRNA|length=355bp|location=Sequence derived from alignment at CM002473.1:296926..297280+ (Nannochloropsis gaditana)
ATGCTACATGTTCACCATTTTTTCGTGCCGTCGTACATCCATGTGATCCA
CCTATTCTATATCCGTCTATATTGCCATGTGATCCGGATATAGACTGATA
GTGTGTGCCTATGACATTGGCATGTCTTGAGTCATTCCTCAGCTTCGTCC
ATTTGACCTGCGCTTCGGCGGAAATGGCGGGCAAACCAACCAAGTCCGGG
TTTACACAAACCAGGCACCTTTACTAAAAAGTGCCTTAATTCCAATATAC
TATGGTTCTGATGTTACCACGACACTGCACGCGTGTTCTTTGTGGGTTTT
GTTTCTGggcatcttcctcttttttggcGGGAAAACCGACACTCTGACAT
TCTga
back to top

Coding sequence (CDS) from alignment at CM002473.1:296926..297280+

>rna7762 ID=rna7762|Name=rna7762|organism=Nannochloropsis gaditana|type=CDS|length=582bp|location=Sequence derived from alignment at CM002473.1:296926..297280+ (Nannochloropsis gaditana)
ATGCTACATGTTCACCATTTTTTCGTGCCGTCGTACATCCATGTGATCCA
CCTATTCTATATCCGTCTATATTGCCATCTTCGTCCATTTGACCTGCGCT
TCGGCGGAAATGGCGGGCAAACCAACCAAGTCCGGGTTTACACAAACCAG
GCACCTTTACTAAAAAGTGCCTTAATTCCAATATACTATGGTTCTGATGT
TACCACGACACTGCACGCGTGTTCTTTGTGGGTTTTGTTTCTGggcatct
tcctcttttttggcGGGAAAACCGACACTCTGACATTCTgaATGCTACAT
GTTCACCATTTTTTCGTGCCGTCGTACATCCATGTGATCCACCTATTCTA
TATCCGTCTATATTGCCATCTTCGTCCATTTGACCTGCGCTTCGGCGGAA
ATGGCGGGCAAACCAACCAAGTCCGGGTTTACACAAACCAGGCACCTTTA
CTAAAAAGTGCCTTAATTCCAATATACTATGGTTCTGATGTTACCACGAC
ACTGCACGCGTGTTCTTTGTGGGTTTTGTTTCTGggcatcttcctctttt
ttggcGGGAAAACCGACACTCTGACATTCTga
back to top
Synonyms
Publications