rna7750, rna7750 (mRNA) Nannochloropsis gaditana

Overview
Namerna7750
Unique Namerna7750
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1953
Alignment locationCM002473.1:260745..262160 +

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Properties
Property NameValue
Productflagellar hook-associated protein
Orig transcript idgnl|cribi|Naga_100184g5.5703.mrna
Orig protein idgnl|cribi|Naga_100184g5.5703
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:260745..262160 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100184g5gene7504Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7750rna7750-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22945.1cds7729Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7750 ID=rna7750|Name=rna7750|organism=Nannochloropsis gaditana|type=mRNA|length=1953bp
ACAGGTCCTCTGAAGGTATCTTTGGCTGCATCACTTTTTTGGATGGCAGC
TCTCGGGCTACCTCCACCACCACGAACGGACACCACGATTGAGGGCCAAT
TCGATGATGCTAGCGATGAAAACGACACAATACATACTGAAAACCACCTT
CAAGACTTGGCAAATGGTTTATCTTTGACCAACCTGCAGTTAGCATCCCC
CTTCGACGAGGATCAAACGCGCGGATCACGACATGTGAAAACTCACACCG
ACAAGGACCATGATCATTTTGAAACCGAGCAAGACGATGATGAAGATGGA
TTAGAGGACGAGTACGCAGATTTGGAGGGGTTACTGCTCGGTGAAGGGTC
GGAGGCGATGCTTGGAGGAGGTACACGAGGATGGGGAGGCGCCTCTGCTG
CTGCCGCAGCTGCTCGATTGGAAAGCCATCGCAGCGTAAATCTGTCCCAG
TCCGTGCGAAACGACATCACAAGAAGCGAGAGGACGGCCGAGAAGCGGGT
CACACACACGGGGCGTGACGAGCGGGCCACTACAGAGCAGGTGTTGGATC
CACGCACGCGCCTCATCCTCTGGCGGTTGCTAAGCAAGGGCTTTCTGGCC
AGCATTGACGGCTGTCTGAGCACGGGGAAAGAAGCGAACGTGTATTATGC
CCAAGACCCGGCGGGGAAGGCCTACGCGATCAAAGTGTTCAAGACCTCAA
TCCTGGTCTTCAAAGACCGGGACCGGTACGTGTCGGGCGAGTTTCGGTTT
CGGCACGGGTATTGTCGGAGCAATCCCAGGAAGATGGTCAAACTGTGGGC
GGAGAAAGAGATGCGGAATCTGCGTCGTCTCGCAGCCGCCGGCATACCAG
CGCCGCGGCCGGTGGTGCTGAAGGGGCACGTCCTCGTGATGGACTTCGTG
GGCACGGGAGGGTGGCCAGCACCGCGGTTGAAAGACGTGCAGCTGGGGCC
TCGGAGGCTCGAGGAGGCCTACTGGTCTTGCCTTGGCTACATGCGGCGGC
TGCATCACGACTGCCGCCTCGTCCACGGGGATCTGAGCGAGTACAATCTG
CTGTACCACGAAGGCCAGGTGATCGTGATCGACGTCTCCCAGAGCGTGGA
GCACGACCACCCTCAGGCCTGGGACTTTTTGCGGAAGGATTGTTTGAATG
TGAACGCCTTTTTCCAACGGAGAGGGGTGCGGGTGGCGGGGACGCGGCGG
ACATTCGATTTTGTGGTGGACGGGGGCCTGGGGACCTCGCAGGAGGAGGT
GAAGGCGGCGTTGAAAAGCTTGAAGGAGACTGTGGATGAGGAGCAGGAGG
GAGGCCCAGAGGAAGGGAGAGGGGAAGGGCGAAGGGATGAGAAGGAGGAA
GAGGAGAGGTTGAAGGAGAGGCAGGAGGAGGCGGTGTTCATGAAGAGCTA
CATTCCTCGTTCGCTGCACGAGCTGCCCAACAGCTTCGAGGAGGCGCGGC
GGATCGAGGCCGGGGAGCGGGAGCAAGTGTATGCGGCAGCCGTGCGGGAG
ATGTTGGTTCCGGCGAAGCAAGAGCGACGGCAGGCCGCGTGCGAGTCGGA
GGGGGAGGCCAGGAGGGCGGAGGGGGTGGCCGAGGAAGAGGAAGCCAGAG
AAGATATGCGTGCGAAAATGAAAGCATTTGCAAAGGAGGAGAGTGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGGAAGAGGAGGAGGA
GGGCACAGATGAAGATGAAGATGAAGATGAGGATGAGGGCAGGAACGAGG
AAAAGGAGTGGCTGGAAAAGAAGAAAGGGGGAATGAGTGGTCGAGGTTTG
ACAGAAGAGGAGCGGAAAGCCGCCAAGGCCCAACGGAAAGCCGACAAGAA
GGCAGTGAAGGCGGATCAGCAGGAGAGACGCAAAACCAAGATCCCCAAAC
ACGTGAAGAAAAGCAGGATTAAAGCAACGTCGGGCGCGCGAAAGAAGCGG
TAA
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protein sequence of rna7750

>rna7750-protein ID=rna7750-protein|Name=rna7750|organism=Nannochloropsis gaditana|type=polypeptide|length=471bp
MNNDEVFAVTAARGFLPVRDPLSRLTAGTSPLSLTSPLHLFHVLEGLGDD
LPKLLLCGSTTVRAQIESRLSAVAMLTLPPVLTSDEEERLFLLLSFVAHA
YVWGRTPSTSTIMSDSEKDPTSGGALHDCDWIPKSLADLWIEVARRRGRP
PILTYATFNLFNWRRLDASKPVELGNIACLNNFLGGQDEEWFRCVHVEIE
SQSAGAVGAILRYVEQSEALKGNRGEGGSGCSLDRGNVDGGEGERSSNND
WDGLPLAAPLVEALEEIQACLCTIQRVLRRMNEACDPHIYYHRVRLYMSG
WRNNPSLPKGLRYGPEGEHRQYYGETGAQSCILPAFDAFLGIEHEKDSMR
EYLLDMRDYMPPAHLSFLLRLEAHRPLVRDVVKKRGLLRAAYNDAIKALA
NFRALHLHAADTYIRKPAPTEQLGTGGSDFRVYLRKHREETKMHAISLKS
TDLGLKEGSKMAIEPQCKEEM
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mRNA from alignment at CM002473.1:260745..262160+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7750 ID=rna7750|Name=rna7750|organism=Nannochloropsis gaditana|type=mRNA|length=1416bp|location=Sequence derived from alignment at CM002473.1:260745..262160+ (Nannochloropsis gaditana)
ATGAACAACGATGAGGTATTCGCAGTTACGGCCGCGCGGGGTTTCTTGCC
CGTGCGTGATCCTCTAAGCCGCCTGACAGCAGGGAcatctcccctctctt
taacctccccacttcATCTTTTCCATGTGCTTGAGGGCCTGGGGGACGAC
CTCCCTAAACTCCTTTTATGCGGAAGTACCACAGTGCGGGCTCAAATTGA
GTCCCGTCTGAGCGCTGTTGCCATGTTAACTCTACCTCCAGTACTGACtt
cggatgaggaggagcggttGTTTCTCCTTCTGTCTTTCGTGGCGCATGCC
TAcgtgtgggggaggacgccttCGACTTCCACGATCATGTCTGACTCCGA
GAAAGATCCAACTTCTGGAGGCGCTCTGCACGATTGTGATTGGATTCCAA
AGTCGCTGGCCGACCTTTGGATTGAGGTGGCACGACGACGGGGCCGACCC
CCGATCTTGACATACGCGACTTTCAACCTCTTTAATTGGCGGCGACTGGA
CGCGTCCAAGCCCGTGGAGCTAGGCAACATTGCGTGTCTGAACAACTTTT
TGGGCGGGCAGGATGAGGAATGGTTTCGGTGTGTTCATGTGGAGATTGAG
TCTCAAAGTgcaggggccgtgggggccaTCCTCAGGTATGTGGAGCAGTC
TGAGGCCTTGAAGGGCAAccgcggggaaggcggttcAGGCTGTAGCCTCG
ATCGGGGAAACGTCGATGGTGGTGAGGGTGAGAGGAGCAGTAATAACGAC
TGGGATGGCCTCCCACTCGCTGCACCTCTGGTGGAGGCTCTGGAAGAGAT
TCAGGCATGCCTGTGCACCATTCAGCGTGTCCTTCGACGCATGAACGAGG
CGTGCGACCCACACATTTACTATCATCGCGTGCGACTCTACATGAGCGGG
TGGCGGAATAATCCTAGCTTGCCAAAGGGCCTTCGATACGGGCCTGAGGG
TGAACACCGGCAATACTACGGGGAGACGGGGGCACAGTCTTGCATCCTCC
CGGCCTTTGACGCCTTCCTGGGTATCGAGCACGAGAAGGATAGCATGCGT
GAATATCTCCTTGATATGCGTGATTACATGCCACCCGCCcatctctcttt
cctcctgcgtTTGGAAGCTCACCGGCCTCTTGTACGGGATGTGGTTAAAA
AACGAGGTTTATTGAGAGCAGCCTACAACGACGCTATCAAGGCGCTTGCC
AACTTTCGTGCTCTACATCTGCATGCCGCGGACACTTACATTCGCAAACC
TGCCCCCACCGAACAATTGGGGACAGGGGGGTCGGACTTCAGGGTATACC
TTCGCAAGCACAGAGAGGAGACGAAAATGCATGCGATAAGCCTCAAATCG
ACAGACTTAGGCCTCAAAGAAGGTTCAAAGATGGCGATAGAGCCACAATG
TAAAGAAGAAATGTAA
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Coding sequence (CDS) from alignment at CM002473.1:260745..262160+

>rna7750 ID=rna7750|Name=rna7750|organism=Nannochloropsis gaditana|type=CDS|length=1416bp|location=Sequence derived from alignment at CM002473.1:260745..262160+ (Nannochloropsis gaditana)
ATGAACAACGATGAGGTATTCGCAGTTACGGCCGCGCGGGGTTTCTTGCC
CGTGCGTGATCCTCTAAGCCGCCTGACAGCAGGGAcatctcccctctctt
taacctccccacttcATCTTTTCCATGTGCTTGAGGGCCTGGGGGACGAC
CTCCCTAAACTCCTTTTATGCGGAAGTACCACAGTGCGGGCTCAAATTGA
GTCCCGTCTGAGCGCTGTTGCCATGTTAACTCTACCTCCAGTACTGACtt
cggatgaggaggagcggttGTTTCTCCTTCTGTCTTTCGTGGCGCATGCC
TAcgtgtgggggaggacgccttCGACTTCCACGATCATGTCTGACTCCGA
GAAAGATCCAACTTCTGGAGGCGCTCTGCACGATTGTGATTGGATTCCAA
AGTCGCTGGCCGACCTTTGGATTGAGGTGGCACGACGACGGGGCCGACCC
CCGATCTTGACATACGCGACTTTCAACCTCTTTAATTGGCGGCGACTGGA
CGCGTCCAAGCCCGTGGAGCTAGGCAACATTGCGTGTCTGAACAACTTTT
TGGGCGGGCAGGATGAGGAATGGTTTCGGTGTGTTCATGTGGAGATTGAG
TCTCAAAGTgcaggggccgtgggggccaTCCTCAGGTATGTGGAGCAGTC
TGAGGCCTTGAAGGGCAAccgcggggaaggcggttcAGGCTGTAGCCTCG
ATCGGGGAAACGTCGATGGTGGTGAGGGTGAGAGGAGCAGTAATAACGAC
TGGGATGGCCTCCCACTCGCTGCACCTCTGGTGGAGGCTCTGGAAGAGAT
TCAGGCATGCCTGTGCACCATTCAGCGTGTCCTTCGACGCATGAACGAGG
CGTGCGACCCACACATTTACTATCATCGCGTGCGACTCTACATGAGCGGG
TGGCGGAATAATCCTAGCTTGCCAAAGGGCCTTCGATACGGGCCTGAGGG
TGAACACCGGCAATACTACGGGGAGACGGGGGCACAGTCTTGCATCCTCC
CGGCCTTTGACGCCTTCCTGGGTATCGAGCACGAGAAGGATAGCATGCGT
GAATATCTCCTTGATATGCGTGATTACATGCCACCCGCCcatctctcttt
cctcctgcgtTTGGAAGCTCACCGGCCTCTTGTACGGGATGTGGTTAAAA
AACGAGGTTTATTGAGAGCAGCCTACAACGACGCTATCAAGGCGCTTGCC
AACTTTCGTGCTCTACATCTGCATGCCGCGGACACTTACATTCGCAAACC
TGCCCCCACCGAACAATTGGGGACAGGGGGGTCGGACTTCAGGGTATACC
TTCGCAAGCACAGAGAGGAGACGAAAATGCATGCGATAAGCCTCAAATCG
ACAGACTTAGGCCTCAAAGAAGGTTCAAAGATGGCGATAGAGCCACAATG
TAAAGAAGAAATGTAA
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Synonyms
Publications