rna7739, rna7739 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7739
Unique Name	rna7739
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2125
Alignment location	CM002473.1:206113..208412 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100102g19.66.mrna
Orig protein id	gnl\|cribi\|Naga_100102g19.66
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:206113..208412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100102g19	gene7493	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7739	rna7739-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22955.1	cds7718	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:206113..208412+
coding sequence from alignment at CM002473.1:206113..208412+

mRNA sequence

>rna7739 ID=rna7739|Name=rna7739|organism=Nannochloropsis gaditana|type=mRNA|length=2125bp
ATTCGTCACCGCTTTTTTTTTGTCTCCGACCCCTCCTCCTTGACCACAGC
ATTTTCTAAAACCATCTCCGCCATCGCGCTTTAAGCATGGCTGCCGATCC
GAAAGCCGCTGTCTCCGCCTCGGGCTCGGCGGATGGACCGGGATTAAATT
CACAGCAACCATCGTCCGCCGATATAGACACAAACTGGGATGAGTGCGTG
GAGACTTTCGACTCCATGGACCTGCGCGAAGATCTCCTCCGCGGCATCTA
CGCTTTCGGCTTCGAGAAGCCGTCCGCAATCCAACAGCGGGCGGTGAAAC
CTGTTCTTATGGGCCGTGATGTCATTGCACAAGCCCAATCAGGGACGGGT
AAGACGGCGACCTTCGCCATCAGCATCCTCCAGTCTATCGACACTTCAAT
CCGGGAATGCCAAGCGTTGGTCCTAGCACCCACGCGAGAGCTGGCCCTAC
AAATCAGAAAGGTCCTTGTCTCGCTGGGCGACTTCGTGGAGACGCTCCAG
GTGCACGCCTGTGTAGGAGGCACGGCGGTGCGGGAAGATATTGCCAAGCT
GCGCAACGGTGTACATGTGGTGGTGGGCACGCCGGGGCGAGTGTACGACA
TGATCAATCGGCGGGCGCTGAAGATGTCGTATGTGAAGCTGTTCGTGCTG
GACGAGGCGGATGAGATGCTATCGCGCGGGTTCAAGGAGCAGATTTATGA
CGTCTTCAAGTTCCTCCCGGAGAAGGTGCAGTGCGCCCTATTTTCGGCCA
CCATGCCCTTAGAGGTCTTGGAGGTGACCAACAAATTCATGAGAGAGCCC
GTGCGCATCCTTGTGAAGCGCGACGAGCTCACACTGGAGGGGATCAAGCA
GTTCTACGTGGCGGTAGAACGCGAGGACTGGAAGCTGGACACGCTCTGTG
ATTTGTATGAGACGCTCACGATCACTCAGGCCATCATCTACTGCAATACA
AGGAGAAAGGTCGACTGGCTGACGGAGCAAATGACGAAGCGAGATTTCAC
GGTCTCGGCCATGCACGGTGACATGGACCAGAGGGAGCGAGACGTGATCA
TGAAGGAGTTCCGCTCGGGCTCCTCACGCGTCCTCATCACGACCGACCTT
CTCGCGCGCGGCATCGACGTGCAGCAGGTTTCGCTTGTCATCAACTACGA
TCTCCCCACTAATCGCGAGAACTACATCCACCGCATCGGTCGGTCGGGTC
GCTTTGGGCGCAAGGGGGTGGCCATCAACTTTGTGACGCAGGGTGACTTA
CAATACATGAAGGACATCGAGGTCTTTTACAACACCCAGATTGAGGAGAT
GCCCAGCGATGTGGCAGATCTCATCTAGGCATGCTTTCCTCGGCATCACA
CCAGCTTTGAAAAGCACACGAAAAGGAATTTTGCGGGCGAGAGAGATGCA
AGGAAAAATAGGTCGTCTGTCGGTCGCAGGTCTGCACATAGCTTGATTTA
AGACGCCATGGGTAGTGTGCTTTTGGGAACGAAGAAATTGGAGTGGATGC
GAGGTGTGTGATTGTGTGTTTTTGTTCGTGTCTGTATGCTGTTGTGTAAG
GCCATACTTTACCTGAGTGTGCTCGTTGAGGAGAGTGGAAAATCGAGTGA
AGATGTAATCTCAGCACTCTGTGCAGGGAGACTCAGGCTTTTGGAAGAAT
ATTACCGAAAGCAGAAATGAAGGAGGGACATGATCGGAGGTGTATCGATG
AGACCCAGAAGCTTGAGGCTAGAGGAGATTCTTCCTGCGTCGAAAAATGG
GGGTCACCACCTTATCACAGCACCTCAGAGCAACTCCATAATTTCAGTTA
CGTCTCTTGCAAAGGCTTGCAGAAACAAGGACTGCCGCAACAGCGAACAG
GAGTTGTCTTCGAGAGTTTCAAGGCACACCACCTCTCCCCCCTCTCCCTT
TTCAGGAAGAAACTATTGGGGCAAAAGCCCGCCGCCAAGCAAGGATGTGT
GCGCAAAGAGCAACGAGACGATAGATGAATGGAGCGCACCAGTCTCCTCA
AGAGCGAAGAAGGTAGTGAGCGATTACGATGGTGAAAAAAAGAAAAAAGG
CTTTGGTGATAAGAACCGTGTGTGCTGTGTGCTTTTCTCAGAACCCTGAA
ATGAATCACACAAATTTTCTAGACA

protein sequence of rna7739

>rna7739-protein ID=rna7739-protein|Name=rna7739|organism=Nannochloropsis gaditana|type=polypeptide|length=479bp
MQAPPDDWGHWFPFVQHNPVLGDKKSWRDRAELLRRLERDGIIVAKGILD
ARECAELAEDMGGWLKRQGIDCNDNKTWDKYNAANLHMSKSILGMMNTGP
ACFSSVALKARSSPKVVEIFKVLHDVPSEDDLVMQLQGLFWGFPPEHYPG
GFIPPLEGAPSNQGGYYHWSEMWMHSDRGRSTTYPAPLQCTLVLEDVSLY
DHGFVFLSKSHYYHDEFFASHPPGTLELEPRSLLPPTTPVAAGSAAMRQQ
QQQQQQQQQLLQEEGKDTYIQLTYENVKYFEQKGCQWKKVVAPKGSIIIW
DSRLIHSTCAPSRGRPFPRARFIVFGGYVPRADLTEEEKAERARNFQRYC
QGIDHQILLELWQRGPPGRLRRLMGLEEPGGEGSVGGLTSVGSGMSGGSA
EEGEEEGEQERKKEGCGGVTEERKLIGGRIHHQEEGERKEEQQKMAMIKL
KGLEGAWSWKEKEAANALLVMMRPNKQKR

mRNA from alignment at CM002473.1:206113..208412+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7739 ID=rna7739|Name=rna7739|organism=Nannochloropsis gaditana|type=mRNA|length=2300bp|location=Sequence derived from alignment at CM002473.1:206113..208412+ (Nannochloropsis gaditana)
CTCTTattctccttctttgccGGTCGCACAATACCTTTGTCAATATTTAT
CGCCGTCAAAGTACTTATCCAGCGCTTTCTCACCCTCGTGGATTTTTGGC
AGAACAAGCGACGGTCATCCATCCCGTTCAACGCTGAATAGGGTCGATGG
GCCGTTCCTAACGCACCCGAAAGGACGCATTGTTTTGGCGGAAATTTTGG
GAGGGGGTGCATTAACTTAAATTTTTCAAGGAAAGATCAAAGACGCTGTG
CGTCTCAGCGCAACTGGTGCTACCACAAGTCTAGTCATCccggggggaga
agagggagcctGCGATCCTTGCTGTTGAAGAACACGGGGTGCTGGCTGGC
TAGCTATGCAGGCGCCGCCGGACGACTGGGGCCACTGGTTCCCTTTTGTC
CAACACAACCCTGTCCTAGGTGACAAAAAGTCCTGGCGAGATCGCGCCGA
GCTTCTTCGACGACTGGAACGGGATGGCATCATCGTGGCGAAAGGTGAGA
TGTATGCGACGTTAGATTGGACAGGGTTTTTTTAGCGAATACCTTTTTAA
AAGATGACATTCTCAAATTCAAATTCCTGTATCCGCTTTTCTAGGTATTT
TAGATGCAAGGGAGTGCGCCGAGCTGGCAGAAGACATGGGGGGTTGGTTG
AAGCGGCAAGGTATCGACTGTAACGACAACAAAACGTGGGACAAATACAA
CGCCGCAAACCTGCACATGAGCAAAAGTATTCTGGGGATGATGAATACAG
GGCCTGCGTGCTTTTCTAGGTAGGTTGTTTTAAAATACCCTGGCTTGTCT
AGCCCGCAGCCGTGCATTCAACGTCCCCGCATCGACACTtacgcctcctc
ttccccctccgatGCTGCACAACAAAACCTTAGCGTCGCCCTCAAAGCCC
GAAGCTCACCGAAAGTAGTGGAAATTTTCAAGGTTCTCCACGATGTTCCC
TCGGAGGATGATTTGGTCATGCAGCTGCAAGGTCTCTTCTGGGGCTTTCC
GCCTGAGCATTATCCCGGCGGCTTCATTCCTCCGCTGGAGGGGGCGCCGT
CTAACCAGGGTGGTTACTACCACTGGTCAGAGATGTGGATGCACAGCGAC
CGAGGCCGCTCCACCACCTACCCGGCTCCGCTACAGTGCACTTTAGTGCT
GGAAGATGTGTCGCTATATGATCATGGCTTCGTCTTCCTATCCAAGTCTC
ACTACTACCACGACGAATTTttcgcctcccacccgcccggCACACTCGAG
CTAGAGCCCCGTTCGCTTCTGCCACCCACAACTCCTGTAGCAGCCGGTTC
CGCGGCCAtgcgacagcagcagcagcagcagcagcagcagcagcaattac
tgcaggaagagggaaaggacacTTACATTCAGCTTACGTACGAGAATGTC
AAATACTTTGAGCAAAAAGGCTGCCAATGGAAAAAGGTGGTAGCACCCAA
AGGCTCCATCATTATCTGGGACTCTCGACTCATCCACTCCACGtgtgctc
cctcccgtggtcgccctttccctcgagCTCGTTTCATCGTCTTTGGCGGC
TACGTTCCTAGGGCAGacttgacggaggaggagaaggcagaaCGGGCGCG
GAACTTCCAGCGTTACTGTCAGGGAATCGACCATCAAATTTTGCTAGAAC
TTTGGCAGCGGGGCCCCCCGGGTCGGCTGCGACGGCTcatgggcttggag
gagccggggggagagggaagtgtGGGAGGGCTGACGAGCGTGGGGAGCGG
CATGAGCGGAGGCAGcgccgaagagggagaggaagaaggagagcaagaga
ggaagaaggaagggtgtGGTGGTGTTACAGAAGAGAGGAAATTGATAGGT
GGAAGGATACATCaccaagaggaaggagaacggAAAGAGGAGCAGCAGAA
AATGGCCATGATCAAGCTGAAAGGCCTCGAGGGGGCCTGGAgctggaagg
aaaaggaggccgcGAACGCGTTGCTTGTGATGATGAGGCCAAATAAACAA
AAAAGATGAAGGCGATATGAGTCAAAAGCAAAAAGCAAACAACCTAGGGC
GACACCGTGCGGGTTACGGACGACGGAGTGAGAGTTAATCGACACAAATA
GAAAGGGTTTCATGGGTGGGGCAGGACGGGATGGGCAATTGGACGAAAAA
GAATATCGAAGTCAAATTTGTCAAGGGCCAGGTGTCGGATGCCTAGAGAC
GCGCCCATTTTGCGAGGAAAAAGTAATTTCTTACTTATCCGAAAATGTAA
ActcaagaggagggattcGCACGTTTTGTCTAGGAAGCTGAATTTTACCG

Coding sequence (CDS) from alignment at CM002473.1:206113..208412+

>rna7739 ID=rna7739|Name=rna7739|organism=Nannochloropsis gaditana|type=CDS|length=4320bp|location=Sequence derived from alignment at CM002473.1:206113..208412+ (Nannochloropsis gaditana)
ATGCAGGCGCCGCCGGACGACTGGGGCCACTGGTTCCCTTTTGTCCAACA
CAACCCTGTCCTAGGTGACAAAAAGTCCTGGCGAGATCGCGCCGAGCTTC
TTCGACGACTGGAACGGGATGGCATCATCGTGGCGAAAGGTATTTTAGAT
GCAAGGGAGTGCGCCGAGCTGGCAGAAGACATGGGGGGTTGGTTGAAGCG
GCAAGGTATCGACTGTAACGACAACAAAACGTGGGACAAATACAACGCCG
CAAACCTGCACATGAGCAAAAGTATTCTGGGGATGATGAATACAGGGCCT
GCGTGCTTTTCTAGCGTCGCCCTCAAAGCCCGAAGCTCACCGAAAGTAGT
GGAAATTTTCAAGGTTCTCCACGATGTTCCCTCGGAGGATGATTTGGTCA
TGCAGCTGCAAGGTCTCTTCTGGGGCTTTCCGCCTGAGCATTATCCCGGC
GGCTTCATTCCTCCGCTGGAGGGGGCGCCGTCTAACCAGGGTGGTTACTA
CCACTGGTCAGAGATGTGGATGCACAGCGACCGAGGCCGCTCCACCACCT
ACCCGGCTCCGCTACAGTGCACTTTAGTGCTGGAAGATGTGTCGCTATAT
GATCATGGCTTCGTCTTCCTATCCAAGTCTCACTACTACCACGACGAATT
TttcgcctcccacccgcccggCACACTCGAGCTAGAGCCCCGTTCGCTTC
TGCCACCCACAACTCCTGTAGCAGCCGGTTCCGCGGCCAtgcgacagcag
cagcagcagcagcagcagcagcagcaattactgcaggaagagggaaagga
cacTTACATTCAGCTTACGTACGAGAATGTCAAATACTTTGAGCAAAAAG
GCTGCCAATGGAAAAAGGTGGTAGCACCCAAAGGCTCCATCATTATCTGG
GACTCTCGACTCATCCACTCCACGtgtgctccctcccgtggtcgcccttt
ccctcgagCTCGTTTCATCGTCTTTGGCGGCTACGTTCCTAGGGCAGact
tgacggaggaggagaaggcagaaCGGGCGCGGAACTTCCAGCGTTACTGT
CAGGGAATCGACCATCAAATTTTGCTAGAACTTTGGCAGCGGGGCCCCCC
GGGTCGGCTGCGACGGCTcatgggcttggaggagccggggggagagggaa
gtgtGGGAGGGCTGACGAGCGTGGGGAGCGGCATGAGCGGAGGCAGcgcc
gaagagggagaggaagaaggagagcaagagaggaagaaggaagggtgtGG
TGGTGTTACAGAAGAGAGGAAATTGATAGGTGGAAGGATACATCaccaag
aggaaggagaacggAAAGAGGAGCAGCAGAAAATGGCCATGATCAAGCTG
AAAGGCCTCGAGGGGGCCTGGAgctggaaggaaaaggaggccgcGAACGC
GTTGCTTGTGATGATGAGGCCAAATAAACAAAAAAGATGAATGCAGGCGC
CGCCGGACGACTGGGGCCACTGGTTCCCTTTTGTCCAACACAACCCTGTC
CTAGGTGACAAAAAGTCCTGGCGAGATCGCGCCGAGCTTCTTCGACGACT
GGAACGGGATGGCATCATCGTGGCGAAAGGTATTTTAGATGCAAGGGAGT
GCGCCGAGCTGGCAGAAGACATGGGGGGTTGGTTGAAGCGGCAAGGTATC
GACTGTAACGACAACAAAACGTGGGACAAATACAACGCCGCAAACCTGCA
CATGAGCAAAAGTATTCTGGGGATGATGAATACAGGGCCTGCGTGCTTTT
CTAGCGTCGCCCTCAAAGCCCGAAGCTCACCGAAAGTAGTGGAAATTTTC
AAGGTTCTCCACGATGTTCCCTCGGAGGATGATTTGGTCATGCAGCTGCA
AGGTCTCTTCTGGGGCTTTCCGCCTGAGCATTATCCCGGCGGCTTCATTC
CTCCGCTGGAGGGGGCGCCGTCTAACCAGGGTGGTTACTACCACTGGTCA
GAGATGTGGATGCACAGCGACCGAGGCCGCTCCACCACCTACCCGGCTCC
GCTACAGTGCACTTTAGTGCTGGAAGATGTGTCGCTATATGATCATGGCT
TCGTCTTCCTATCCAAGTCTCACTACTACCACGACGAATTTttcgcctcc
cacccgcccggCACACTCGAGCTAGAGCCCCGTTCGCTTCTGCCACCCAC
AACTCCTGTAGCAGCCGGTTCCGCGGCCAtgcgacagcagcagcagcagc
agcagcagcagcagcaattactgcaggaagagggaaaggacacTTACATT
CAGCTTACGTACGAGAATGTCAAATACTTTGAGCAAAAAGGCTGCCAATG
GAAAAAGGTGGTAGCACCCAAAGGCTCCATCATTATCTGGGACTCTCGAC
TCATCCACTCCACGtgtgctccctcccgtggtcgccctttccctcgagCT
CGTTTCATCGTCTTTGGCGGCTACGTTCCTAGGGCAGacttgacggagga
ggagaaggcagaaCGGGCGCGGAACTTCCAGCGTTACTGTCAGGGAATCG
ACCATCAAATTTTGCTAGAACTTTGGCAGCGGGGCCCCCCGGGTCGGCTG
CGACGGCTcatgggcttggaggagccggggggagagggaagtgtGGGAGG
GCTGACGAGCGTGGGGAGCGGCATGAGCGGAGGCAGcgccgaagagggag
aggaagaaggagagcaagagaggaagaaggaagggtgtGGTGGTGTTACA
GAAGAGAGGAAATTGATAGGTGGAAGGATACATCaccaagaggaaggaga
acggAAAGAGGAGCAGCAGAAAATGGCCATGATCAAGCTGAAAGGCCTCG
AGGGGGCCTGGAgctggaaggaaaaggaggccgcGAACGCGTTGCTTGTG
ATGATGAGGCCAAATAAACAAAAAAGATGAATGCAGGCGCCGCCGGACGA
CTGGGGCCACTGGTTCCCTTTTGTCCAACACAACCCTGTCCTAGGTGACA
AAAAGTCCTGGCGAGATCGCGCCGAGCTTCTTCGACGACTGGAACGGGAT
GGCATCATCGTGGCGAAAGGTATTTTAGATGCAAGGGAGTGCGCCGAGCT
GGCAGAAGACATGGGGGGTTGGTTGAAGCGGCAAGGTATCGACTGTAACG
ACAACAAAACGTGGGACAAATACAACGCCGCAAACCTGCACATGAGCAAA
AGTATTCTGGGGATGATGAATACAGGGCCTGCGTGCTTTTCTAGCGTCGC
CCTCAAAGCCCGAAGCTCACCGAAAGTAGTGGAAATTTTCAAGGTTCTCC
ACGATGTTCCCTCGGAGGATGATTTGGTCATGCAGCTGCAAGGTCTCTTC
TGGGGCTTTCCGCCTGAGCATTATCCCGGCGGCTTCATTCCTCCGCTGGA
GGGGGCGCCGTCTAACCAGGGTGGTTACTACCACTGGTCAGAGATGTGGA
TGCACAGCGACCGAGGCCGCTCCACCACCTACCCGGCTCCGCTACAGTGC
ACTTTAGTGCTGGAAGATGTGTCGCTATATGATCATGGCTTCGTCTTCCT
ATCCAAGTCTCACTACTACCACGACGAATTTttcgcctcccacccgcccg
gCACACTCGAGCTAGAGCCCCGTTCGCTTCTGCCACCCACAACTCCTGTA
GCAGCCGGTTCCGCGGCCAtgcgacagcagcagcagcagcagcagcagca
gcagcaattactgcaggaagagggaaaggacacTTACATTCAGCTTACGT
ACGAGAATGTCAAATACTTTGAGCAAAAAGGCTGCCAATGGAAAAAGGTG
GTAGCACCCAAAGGCTCCATCATTATCTGGGACTCTCGACTCATCCACTC
CACGtgtgctccctcccgtggtcgccctttccctcgagCTCGTTTCATCG
TCTTTGGCGGCTACGTTCCTAGGGCAGacttgacggaggaggagaaggca
gaaCGGGCGCGGAACTTCCAGCGTTACTGTCAGGGAATCGACCATCAAAT
TTTGCTAGAACTTTGGCAGCGGGGCCCCCCGGGTCGGCTGCGACGGCTca
tgggcttggaggagccggggggagagggaagtgtGGGAGGGCTGACGAGC
GTGGGGAGCGGCATGAGCGGAGGCAGcgccgaagagggagaggaagaagg
agagcaagagaggaagaaggaagggtgtGGTGGTGTTACAGAAGAGAGGA
AATTGATAGGTGGAAGGATACATCaccaagaggaaggagaacggAAAGAG
GAGCAGCAGAAAATGGCCATGATCAAGCTGAAAGGCCTCGAGGGGGCCTG
GAgctggaaggaaaaggaggccgcGAACGCGTTGCTTGTGATGATGAGGC
CAAATAAACAAAAAAGATGA

Synonyms

Publications