rna7733, rna7733 (mRNA) Nannochloropsis gaditana

Overview
Namerna7733
Unique Namerna7733
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3801
Alignment locationCM002473.1:193108..193406 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100102g12.79.mrna
Orig protein idgnl|cribi|Naga_100102g12.79
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:193108..193406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100102g12gene7487Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7733rna7733-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22968.1cds7712Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7733 ID=rna7733|Name=rna7733|organism=Nannochloropsis gaditana|type=mRNA|length=3801bp
ATGTCGGCCTCAGAAGACGCGGTCTCGCGCCCGCCAGAGGCCGCCTCGGC
GCCATTGCAGCCACCCTTGCCGCCCGAGAAGGCGCGAGAAGACGGGGATC
ACAGGGAGCAGGATGGAAAGGAAGGTGGTGCTTCACGACCCTCGACCCCG
GCACCCGCGGCCGCTGCGATGCGAGAGAAGGGCGCGGCTGCCAACATGTT
GAGTGCAAGCGGCTGCACGGTCGGCGGGGGCCTGGGTCTCCTGGGCGCGA
CGGGGCTGGTGGGAGGGAGCGACGGCGCCTTACCGGGCATGGGGGATGGG
CGTGACCCGGAGGAGGAGTTGCGGAAGCAGATCATCGAGTACTCCCCGCA
GAAGCGGTACGTGCGGTTCAACGAGGTCCTGGGGAAGGGCGCGTACAAAA
TGGTGTACCGGGCCTACGACACCAAGGAGGGGCTACTGGTGGCCTGGAAC
ACCATCAGTCTGGCAGGACTGCCCAAGCAGGAGAAGATCCGGATCATGCA
CGAGGTGCGCCTGCTCGAGCAGCTCGATCACGGGAACATTATCTCCTTCT
TCGGCTCCTGGGTGAACCGGGAGCGGGAGGAGGTGGTTTTCATTACGGAG
ATTCTTTCCTCCGGCTCCCTCAAGGACTTCATCAAGAAGGTGCAGGTCAT
CCGCTGGAAAATCATCAAGCGCTGGTGCCGGCAGATCCTGCGCGGGCTCC
TCTACCTGCACTCCCACGTCCCGCCCATCATCCATCGGGACCTCAAGTGC
GACAACATCTTTATCAACGGGTCCTCGGGCGACCTCCGCATCGGGGACCT
GGGGCTCTCCACCTACATCACGGGACGGACTGCACCGCTCTCGGTGCTCG
GCACCCCCGAGTTCATGGCGCCCGAGCTCTACGATGAGAAGTACGACGAG
AAGGTGGACGTGTACGCCTTCGGGATGTGCGTCCTCGAGATGGTGACCAA
GGAGACGCCCTACAGTGAGTGCGCCAACGCCGCTCAGATCTACAAGAAGG
TGATCGGCCAGGTCGCGCCCAAGGTCCTCTTCCGCGTCTGCAACCTGCGG
GCACGCGACTTCATCCGCAGCTGTCTGGCCTCGGACCCCTCCCAACGTCC
CAGCGTGCAGGACCTCTTGGAGAGCAACTTCCTGAAGCAGCAGGAGGAGG
ACGACGAAGAGGTGCTGGTCGAGTCGCCCTCCACGTCCAGCTCCTCTTCT
CCCGCACCGACCCGGCCCGCCCAGCCCGACGTGAAGAAAGAGGAAGAGCA
GCGGCCACAGCGCCAGGAGCAGCAGCAGCCCCCCGGTACGGGCCCTCATA
GTGTTGACACTCTCAGGCGAGGCTTCGATTCTCCCGGAGGTGGGAAGGCG
AGCGGCGAGGGAGGGAAGGGCGGGGAAGGGGGAGCCTCCAAGAGGGTGCC
GGATTCGCCCGTGACCAAGGCGGGGGGTCCCAGCGAGAAGGGCCGCTCGA
GCGGGCGGCATGGGCCTGGGGAGACGCTGCGGCGAGTGAGTCGCGCAGGC
AAGCCGCTGGTGGCGGGCGGAGCTCCACCGGCGCACTCGTCGCAGCACCT
GGAGCATCAGCGGGCCTTGCGGCAAGAGAAGAAGGGCCCGGGCGGGGCCT
CGAAAGCGGGCAGCAAGGGGGAGGCCTCTTCCCCCTCGGACTCTGGCGGC
GGCTCCTGCTCTAGCGACGGGGACCCGGCCGAGCTTCGCCAGGACCAGTT
CCTGGGCATGCACCATCAGAGCCACCACCACGCCCTCCAAGGCCATGGAG
CTCACGAGGGCGGCGGTCCCTTCCCTTTGCCCGAGCGCACCCACTCCTCC
CACTCGCTCGCCACCTCCGCGCACTCGGAGGGTTCTTCCTCCTTGCATCT
CTACTACGACATCCCCCCTACCCCCGCCCTCTCCCATAGCGGCTCGGAGG
GGACGCTCGAGAGCTACAACACCTCTTCGCCCGTCCAGGAAGGACATTTT
GGGGGCTCCGCCCTATTGGAGGGCCCCACCTCCTCTCTCCCTGCGCCCCC
GAGTGCGCTGCTCGAGGCGGCGCAGCACCAGCACCTGCAGTCCTTGGGGG
GGATGGGGGGCCAGCTCTCTCACCATCAGCTGCAGGGGCGGGAGCGGGAC
GGCAAGCATGCTGCTCGGGCGGCCTCCTCCCCTCGCCATGGCGGCGCCGA
GCGACCCCCCCGACATGGCCCCTCTCCCATGAGTCAGACCGCTGGGCGAG
GCCAGCAAGCCCCCTCTGCCCACCACCACCACCACCACCACCAAGACCCC
GAGAGCTGGGCTTTACTGCACGTGAACGAGGCCGAGCCCCCCCCCCCCTC
CGCTGCAGCCGGTAGTCGGGGCGGCCCGGGGCCGGGGGGAGCTGCCCGTC
GTGGCAGCGGCGCATCCTCCAGCCCGGCCATGTCTTCCACAGAGGGCAAT
CCCCCGGCGCCGCACCAGCCCCACCCGCAGCTGTCTCAGACGAGATACGG
GGGCGGAAGTCCGGGCAGGGGGCCTACCCAGCAGCAACAGCGACCCTCGG
CGTCCTCCGCCCCCAGACCCGCGCCCACGGTGCAGGTCCGCGTGGGGGAT
ACGGGCGCCAGGGCGTCGTCGGACGTGCTTTGCCTGGTGATCCGCGCCAA
GATGAAGGGCAAATTGCGAGATATCGAGTTCGACTTCCATCTGAGCGACG
ACGACGCCTCGCAGGTCGCGCAGGAGATGGTGCAGGAGCTCGCTCTGCCT
GCCTCCGATCTGGGGCCGGTGGCCGCCACCATCCGCCGGCTCGCGGACGA
GTCGCGGCGGGCCCGGGCGCAGGAGGCAAGAGAGCGGCGTGATCGGGCGG
AGATGTTGCCGCCCAGCACCGATCTTCAGCGCTCCTCGTCTATGGAGGGG
GTCTCGGGAACGATGAATGTTGGACAGTACGGAGAGCCGCAGCAGGAGCA
AGGGCGGGGGCGGGGGGAAGCAGAAGAAGAGAGGGAAGTGTGTCGGGTAG
GCCTGTCGCGCTCCCTCTCCACGAATAACATGGCGCACCTGGCGGCGATG
CGTGCTAGCGGGCAGTTCCAGCCAGACCTGAGCCTGGACAGTCTCGGCAA
CCACCAGGGCCAGGCGCACTCTCGGAACCATTCGGCCGATGCTTTGGTGA
AGCAGCAACTACTAGAGGAGCAGCACAGGAGACAGGAGGGTGGCGGATCT
CACCACATTCGCAGCGACGCGAGCAGCGACGGGGGATGGAGTGGTGGAGA
AGGAGCAGGCGGGGGAGGAAGAGCAGGGCGATGGCAAATGACAGGCCTTC
CTCCTCATCTACAGCATTTCTATCCACCCTCTGACGATGATCTGCATCGT
TTGAGTCCCGCGGCGTCGCAAGGAGAGGAGTTTGACTCTTCTTCTCATTC
GCACGCTCCCTCGCACCTCCAAGGAGGGGCCTCTCACACGGCCTCGTTCG
TCTTGAGCTCGGATGACGAGTCAACAGGGGAGCGGGGAGACGGGGGAGAC
GACCTAGACGGTGACGGGGAAATAACGCGACTGCGCTCGGACTACGAGAA
GGGCCTGCAGCGGTCACAGAAAGCATTCTCCATCCGGCTGGAGAATATGA
GGAAGTCAAGGCAGGAGAAAGAGGAAAGCCACAGGAAGCTGCTCGAGAAG
CACATGCGCGACATGGCCGACTTCGAGCGAAAAGTACGGACCGCAGAGAA
AGAGCAGATCATGCGTCTTCAGGAGCTGGAAGAGCAGTGGCGGACCGTCA
AAATGGAGCATCGGGAGAGGCGGCGACTGGCAAAGCAGGCGGCAGCGGAG
TGCGGAAGCCTTGATGGCCCCAACAGCTCGATGCCTCAAGCAGCTCCCTG
A
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protein sequence of rna7733

>rna7733-protein ID=rna7733-protein|Name=rna7733|organism=Nannochloropsis gaditana|type=polypeptide|length=66bp
MHRKGRGLLVKIRLDRLFTKYGTNLKRTKIRKLCIRRGKCLYKEKSLSLS
QFATIRDFLRGDRESL
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mRNA from alignment at CM002473.1:193108..193406+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7733 ID=rna7733|Name=rna7733|organism=Nannochloropsis gaditana|type=mRNA|length=299bp|location=Sequence derived from alignment at CM002473.1:193108..193406+ (Nannochloropsis gaditana)
ATGCAccggaaagggagaggactcCTAGTAAAGATTAGACTTGATCGACT
ATTTACAAAATATGGGACTAATTTGAAGCGGACAAAAATCAGAAAATTGT
GTATCAGGAGGGGCAAGTGTCTGTATAAAGAAAAAAGCTTGTCTTTATCA
CAATTTGCCACGATTGTCAATTAAAAAAGGTTGCCCGTCTTTTTACTCAT
GCGTCGTTGTGGAGATTAAAACAATTGCATGAAGTTCAGTACTCCTGCAA
TTTATTTTGGCAGCGTGATTTTCTgaggggggacagggagagcCTTTAG
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Coding sequence (CDS) from alignment at CM002473.1:193108..193406+

>rna7733 ID=rna7733|Name=rna7733|organism=Nannochloropsis gaditana|type=CDS|length=402bp|location=Sequence derived from alignment at CM002473.1:193108..193406+ (Nannochloropsis gaditana)
ATGCAccggaaagggagaggactcCTAGTAAAGATTAGACTTGATCGACT
ATTTACAAAATATGGGACTAATTTGAAGCGGACAAAAATCAGAAAATTGT
GTATCAGGAGGGGCAAGTGTCTGTATAAAGAAAAAAGCTTGTCTTTATCA
CAATTTGCCACGATTCGTGATTTTCTgaggggggacagggagagcCTTTA
GATGCAccggaaagggagaggactcCTAGTAAAGATTAGACTTGATCGAC
TATTTACAAAATATGGGACTAATTTGAAGCGGACAAAAATCAGAAAATTG
TGTATCAGGAGGGGCAAGTGTCTGTATAAAGAAAAAAGCTTGTCTTTATC
ACAATTTGCCACGATTCGTGATTTTCTgaggggggacagggagagcCTTT
AG
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Synonyms
Publications