rna7728, rna7728 (mRNA) Nannochloropsis gaditana

Overview
Namerna7728
Unique Namerna7728
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1171
Alignment locationCM002473.1:182137..184683 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100102g7.78.mrna
Orig protein idgnl|cribi|Naga_100102g7.78
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:182137..184683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100102g7gene7482Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22967.1cds7707Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7728rna7728-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7728 ID=rna7728|Name=rna7728|organism=Nannochloropsis gaditana|type=mRNA|length=1171bp
ACCGAGGTGTGAGAGTGGTGTCAAGATGTCAGTGTTTCTGATGCCAGGCC
GCAAGGTGGTGCACGCGCGAGTATCTTCCTGTCCGGGAGCTCGCCTCCGT
CATACAGGTCTCGCGCCCATTGCACATCACTAATTCACCATCACTCACCG
GCCCTTTCTCCTATCATCTACAAGTTCACAGTGATCCGACTCACAGGGAG
ACAATGCAAGCCCTAAGCGCCTCTTCCCGCGGATTTATGCGTGCCACGAG
GCGGTTCGTGGCCAAGGTAAGGACAGGGACGGAGCAAGAGCCGCACTACG
CACTTGTATTCACAGTCCCCAACCCCTTCATTTTCCCAGGCCCCTGCATC
CGCGCCATGCGCCACGTCTCGACAACTATCTGCATCTTGCATGCTACGTC
TCAGTCCTGCCTCAAATTTGGCCGCAGCAGCTCGTCGTAGCTTTGCCTCG
TCGCCTCCCCCTGGGAACGAGGACTCGCATGACGATTTTAAACCCCAGCG
GTCATCCCCCCCGGCAGACTTGGACGGCGCTATCAAGATGATCGCGGAGC
AAGTGAAGAAACACCAAATTATGCTGTACATGAAAGGCACGCCGGCTCGG
CCCCAGTGTGGGTTCTCTGCGCAGGCCGTCCGCATTTTGCACGCTTCTGG
AGTTGACTTCGACTCGGTGAACGTACTGGACTATCCCATGATCCGCGAGG
GCGTCAAAAAGTATTCGGAGTGGCCGACAGTGCCGCAGCTCTTCGTGGGA
GGGGAGTTCGTCGGGGGGTGTGACATCATGACCTCCCTCTTTCAGTCCGG
AGAGCTGGCCCAGATTCTCGAGGAGTCGGCCAAGAAACAGCAGAAAGAGG
GGGAGTCTGCGCCATGAGGCGGAAAGGCCAGGGAGGAGGGCGGGAAAGGA
GAAGGGATGGCGGGGGCCGTGGAGTGACTGGGCTTTCGGTAGCCGGGGTG
TACACAACGACGGGGGGTGCACGCGCCATGTGGGTGAGAGGGGCGACGTT
GTGGAAGGCATGGGGGCGAGGGAAGAAAAGCAAAGAAGCAAAAAGAAGGG
CGTGTGGGCGTGAGCCGGCTCTCTGCGCGCGGGCTCTGTCCGAGAGGGCC
CCTTCGGCGTGGCTGCGTGCTTGTGTCTTCCTCTTCACAGTGATGCTTCT
GCTTCTCCCCATCTTCCTTCT
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protein sequence of rna7728

>rna7728-protein ID=rna7728-protein|Name=rna7728|organism=Nannochloropsis gaditana|type=polypeptide|length=500bp
MTSYVHPQTPLPFYSVEHASHSRPSSPYNASYVAGKPELHLNEGPPQFKS
AMELVQRLQEQLKTVRLDKGRLEERCFALEQEVGEISQHLLASKPVRTNK
LSPSFGSPTFAGSAYHPKIENGPYLENPSAKEWASKDSLRARLVSVEAQL
ASRDKEVLSLQKRLDKALRALAAAESKHLEDLSRLFRGSARTGENNGERA
KWKREVKLALREAVRWRCEVERVTGRAGGEEGGADEGEGGGAPTVLKVTG
LGVKRARREGKRVTPALQERIAKQAGAMESEKREVRALEARLERALRQKE
KYKERLVASRGAALALKQELASLAGRPEVLEDDLRGSVGGAPTRGQGGGA
CLAGGERAFHGGRGEGGEWDGGKGGNRVGGKQGRGQEGRESGRISETQQL
HNRRRGGRLLRAEADAENQDANGESQRDLDACSRRRQKKPHRKRQDPPVG
NTEPIPLTPLAIKPQAWEINFPPGQAGFEISPVLHRFQKYGRTEGRGGQK
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mRNA from alignment at CM002473.1:182137..184683-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7728 ID=rna7728|Name=rna7728|organism=Nannochloropsis gaditana|type=mRNA|length=2547bp|location=Sequence derived from alignment at CM002473.1:182137..184683- (Nannochloropsis gaditana)
CTCGGCGTGAAGCTTTTCCATTGTGCGTATTTTTCCTCTTTAAGAGCCAT
TGCAAAAACGCACGACCTTTTCATAAAATATAGCAATATACCGTAAAGAA
CTTAAAACAGAGAGCAAACACGGGAAATCTCAGGGAAATTCAGCTCGGAA
GTCCTCGGGAGTTGAAGCGGCGAGAGCAGAGTTCAATCTGCGCCCAGTTT
GCAGCCGGTCTATCCCCCTATTTGTCTGGGCAGAATCCCCGAGTAACATG
AAAGCAAGCAAATTTTCTCGTTGGGTAATTAAAGAAAATATCAAATAGCG
AGATGGATGATTGTCGGCTCCCCATCTTGTCCCCATATGCATAATATACC
CTTGCTGCTCCGAGTACCACAGGCAGAAGCACCCTATGACTTCCTATGTG
CACCCCCAAACACCGCTTCCCTTCTATTCTGTGGAGCATGCCTCGCACTC
TCGGCCATCAAGTCCATATAATGCCTCATATGTAGCAGGTAAGCCTGAAT
TGCATCTGAATGAAGGCCCCCCGCAGTTCAAAAGTGCCATGGAGCTCGTG
CAACGATTACAAGAGCAACTCAAGACAGTTCGGCTCGACAAAGGACGGCT
TGAGGAGCGATGCTTTGCTCTGGAGCAAGAAGTGGGTGAGATCAGTCAGC
ATTTGCTGGCTTCAAAGCCTGTAAGAACGAACAAGTTGTCGCCATCGTTC
GGGTCTCCCACATTTGCTGGCAGCGCGTACCACCCTAAAATTGAAAATGG
ACCTTATTTGGAAAATCCGTCGGCAAAAGAATGGGCCTCCAAGGATAGTC
TGCGCGCGCGACTCGTCTCAGTGGAAGCGCAGCTCGCGAGTCGCGACAAG
GAAGTCTTGTCACTGCAGAAGCGTTTGGATAAGGCCCTGAGGGCCCTGGC
GGCGGCAGAGAGCAAGCACTTGGAGGACCTGTCGCGGCTCTTCCGGGGGT
CGGCGCGTACGGGGGAGAACAACGGGGAGCGTGCCAAATGGAAACGGGAA
GTGAAGCTGGCGCTGCGGGAGGCCGTGCGGTGGAGGTGTGAGGTCGAGCG
GGTGACGGGGCGGGCGGGGGGGGAAGAGGGGGGCGCGGACGAGGGAGAGG
GAGGGGGAGCCCCGACTGTTTTGAAAGTGACGGGGCTGGGGGTGAAACGG
GCGAGAAGAGAGGGAAAGAGGGTCACTCCAGCGTTGCAGGAGAGGATCGC
GAAGCAGGCAGGGGCGATGGAGTCGGAGAAGAGGGAAGTGAGAGCATTGG
AGGCGCGGTTGGAGCGGGCCCTCCGTCAGAAAGAGAAGTACAAAGAGCGC
TTAGTTGCCTCGCGTGGAGCCGCGTTAGCGCTAAAGCAGGAGCTGGCGTC
TCTGGCCGGGCGGCCCGAGGTCCTGGAGGACGACTTGCGCGGGTCGGTCG
GGGGGGCGCCTACGCGGGGACAGGGAGGAGGGGCCTGCTTAGCGGGCGGT
GAAAGAGCCTTTCATGGAGGGAGAGGGGAGGGAGGGGAGTGGGATGGAGG
GAAGGGGGGGAACCGCGTGGGTGGCAAGCAGGGGAGAGGGCAGGAAGGGC
GAGAAAGTGGACGCATCTCTGAGACCCAGCAGCTACACAACAGGCGTCGT
GGCGGGCGGTTATTACGGGCCGAAGCTGACGCAGAAAACCAGGACGCAAA
TGGAGAAAGCCAGAGGGACTTGGACGCGTGCTCCAGGCGCCGCCAAAAGA
AACCGCACCGCAAGCGTCAGGACCCGCCTGTCGGAAACACGGAGCCCATA
CCCTTGACGCCATTGGCGATCAAGCCGCAGGCATGGGAAATCAATTTTCC
ACCAGGCCAGGCGGGTTTCGAGATCTCTCCTGTCCTCCACCGGTTCCAGA
AGTACGGGCGAACGGAAGGAAGAGGAGGGCAGAAATAATGTAAATTAACC
AAAGTAGATCCGAAAGACGACTACAAAATGGAAATACCCCAAAGCATTTG
CGCATATATTTTTAGGGCTACAAGTGTGCGTGCTTTAATGTGCATTCATG
CGCTTGGCTGACTTTGCTGAGTTTGCCTCTCCTCCGCATCCTCCAGGGAG
TAGTCCCAGTCTCCCTCCGCCCACACGAACTTCTCCGGCAACCCGCACTC
CTTGAAAAAAGCCTCCAAAGATCGTTGCACCAGGTTCCGGCAGTCACCCC
CTGTAGTTCGGAGCTCCAGTGATACCTCTTGAAAGCGCCCGTCTTCCTTG
GTCTTGAGGAAAAACCGGTAGGAATGCAGCCCCGCGCGCGGTGGAGCGGT
ATCCTTGTCGCGGACATCGTCCAAGAACGCTTGAAAGCGACTGAAGGATT
CCTGATTGACGTCTTTCTGTTTTGGGTAATAAGTGAAGAGGTCTGGATGC
ACCCTCAAGAAAAATTTGCGGAGTGTTTGCTGCAGGAGAGGATGCGCTCC
GCCGTCTCCATCGGCCTGATGCCGCCACCGGGGGGCCAACCCTGCACGCT
TTCGCCCGCCGCGCTGCCGAGCAGTGGAAATGGCCTGGGAGGTCATTATT
GACGGCTGACATGATACTCCCAGCCAAGAGAAGGGGAGGGGCAGGCA
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Coding sequence (CDS) from alignment at CM002473.1:182137..184683-

>rna7728 ID=rna7728|Name=rna7728|organism=Nannochloropsis gaditana|type=CDS|length=1503bp|location=Sequence derived from alignment at CM002473.1:182137..184683- (Nannochloropsis gaditana)
ATGACTTCCTATGTGCACCCCCAAACACCGCTTCCCTTCTATTCTGTGGA
GCATGCCTCGCACTCTCGGCCATCAAGTCCATATAATGCCTCATATGTAG
CAGGTAAGCCTGAATTGCATCTGAATGAAGGCCCCCCGCAGTTCAAAAGT
GCCATGGAGCTCGTGCAACGATTACAAGAGCAACTCAAGACAGTTCGGCT
CGACAAAGGACGGCTTGAGGAGCGATGCTTTGCTCTGGAGCAAGAAGTGG
GTGAGATCAGTCAGCATTTGCTGGCTTCAAAGCCTGTAAGAACGAACAAG
TTGTCGCCATCGTTCGGGTCTCCCACATTTGCTGGCAGCGCGTACCACCC
TAAAATTGAAAATGGACCTTATTTGGAAAATCCGTCGGCAAAAGAATGGG
CCTCCAAGGATAGTCTGCGCGCGCGACTCGTCTCAGTGGAAGCGCAGCTC
GCGAGTCGCGACAAGGAAGTCTTGTCACTGCAGAAGCGTTTGGATAAGGC
CCTGAGGGCCCTGGCGGCGGCAGAGAGCAAGCACTTGGAGGACCTGTCGC
GGCTCTTCCGGGGGTCGGCGCGTACGGGGGAGAACAACGGGGAGCGTGCC
AAATGGAAACGGGAAGTGAAGCTGGCGCTGCGGGAGGCCGTGCGGTGGAG
GTGTGAGGTCGAGCGGGTGACGGGGCGGGCGGGGGGGGAAGAGGGGGGCG
CGGACGAGGGAGAGGGAGGGGGAGCCCCGACTGTTTTGAAAGTGACGGGG
CTGGGGGTGAAACGGGCGAGAAGAGAGGGAAAGAGGGTCACTCCAGCGTT
GCAGGAGAGGATCGCGAAGCAGGCAGGGGCGATGGAGTCGGAGAAGAGGG
AAGTGAGAGCATTGGAGGCGCGGTTGGAGCGGGCCCTCCGTCAGAAAGAG
AAGTACAAAGAGCGCTTAGTTGCCTCGCGTGGAGCCGCGTTAGCGCTAAA
GCAGGAGCTGGCGTCTCTGGCCGGGCGGCCCGAGGTCCTGGAGGACGACT
TGCGCGGGTCGGTCGGGGGGGCGCCTACGCGGGGACAGGGAGGAGGGGCC
TGCTTAGCGGGCGGTGAAAGAGCCTTTCATGGAGGGAGAGGGGAGGGAGG
GGAGTGGGATGGAGGGAAGGGGGGGAACCGCGTGGGTGGCAAGCAGGGGA
GAGGGCAGGAAGGGCGAGAAAGTGGACGCATCTCTGAGACCCAGCAGCTA
CACAACAGGCGTCGTGGCGGGCGGTTATTACGGGCCGAAGCTGACGCAGA
AAACCAGGACGCAAATGGAGAAAGCCAGAGGGACTTGGACGCGTGCTCCA
GGCGCCGCCAAAAGAAACCGCACCGCAAGCGTCAGGACCCGCCTGTCGGA
AACACGGAGCCCATACCCTTGACGCCATTGGCGATCAAGCCGCAGGCATG
GGAAATCAATTTTCCACCAGGCCAGGCGGGTTTCGAGATCTCTCCTGTCC
TCCACCGGTTCCAGAAGTACGGGCGAACGGAAGGAAGAGGAGGGCAGAAA
TAA
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Synonyms
Publications