rna7718, rna7718 (mRNA) Nannochloropsis gaditana

Overview
Namerna7718
Unique Namerna7718
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1041
Alignment locationCM002473.1:161086..162750 +

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Properties
Property NameValue
ProductCycloeucalenol cycloisomerase
Orig transcript idgnl|cribi|Naga_100586g3.87.mrna
Orig protein idgnl|cribi|Naga_100586g3.87
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:161086..162750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100586g3gene7472Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7718rna7718-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22977.1cds7697Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7718 ID=rna7718|Name=rna7718|organism=Nannochloropsis gaditana|type=mRNA|length=1041bp
GGAGGGGCTGCCTTGGAGGCCATGAGTCCGACCACAAGCATTGACGGCCT
CTTCCCATCGGTTGGGTCGTTTTGTTGTGGCGCTCGAAACTTGCCACTTT
TTCATGTTAGCTGCTGCGCTGGTCATCTCCCTCAGCGTGCTTCAACTTTC
AGCCCTACCACTGGGAGCTTCCCCTCGGGCGCTTTTTCTGGCCGAATTTC
CCCGCACTTCTGTGCATTCCCTCGCAAATTCTCACAAAAAAAAGGCCTGT
GGAACTGCTTCGATGCCCTTTTCTGCTTCAAACCCTTCTCCTCCGCCTTC
AGCTCACGATCAGGGCCCCCCTACCCCCCTCGCGGACTCGCCCACCCTAC
GCGGCCCCTCCTTCCTGAACCCCGTGGCCGCAGACTACGCCATTTTAATG
GGTAAGGCCCTCTCCCTCGACAAGGCATGGCTATTTCCGCCCCCCCCCTC
TCCTGTGGCCGACCAGGGGGCAGGCAGCACGTCGAAGGCCCTCCCCCCCC
GCCTGGCCCATGTCGTCATCAAACGCAGTCTCCCGGACGTGGACAACGAC
CGAGAGCGGACCTTCCTGCACCACTTCGACCTCCTCCTGCCCCCTCTTCA
CTCCTCTGACCACCAGCACGGACGCCAGGCCTCCTGTCCTGCCTCCTCCG
GCCCCTCCCCCCCGCCCTCACCTCAGTGGCTGCCGCCCGCGGGCTCCCCG
CAGGAGGTGACGGGGGCATCGGTCCTTTCCTACAGCCCCAGCGGCCGGTT
CCTGGTCATCTTCAAGGAGGAGAAGGAGGGAGCGGAGGAGGCCTACGCGG
AGGTGTGGGGTCGGACGGGCGTGCTGCGGAGAATTCGCTTGGGCGGGGTG
CACGGGAAGGTGGTTGGGGGGGGGGTCCTGGGGGGCACGGCCTGGAGCCA
GGATGAGGAGGTGCTGGCCTACGTGGCGCGGGTGAGGGTTCAGGGCCCGG
GGCGGGCGACGTCGGCATTCGAGGCGGCGGGGGCGGGGAGGGGGAAGGAA
GGCGAGGGGCCGGCGGGGGGCGTCGTGGGCTTCGGAGTACC
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protein sequence of rna7718

>rna7718-protein ID=rna7718-protein|Name=rna7718|organism=Nannochloropsis gaditana|type=polypeptide|length=358bp
MASKAAPPSGSTSSPFTIADAARAAWSCVSDVFSPSPPPPSKDDTADITV
VMTLILLGQLAVLSVVFVFLTPAKGGGRWLPPADTDKGAYERFVLAYSPV
WMGVFAVIIAGQLYETFTAHTYMLVCTTLCLPLFFYPFLAPALPSHAPPP
KEASEGDNTSLPSSSTVPSLLQGYPLKATAWLAIYSHIGNYWYTHYFYTV
LGASYSMPSLRLNDVPLPLYFATFFYFSTYHALSNLLLRRVTSGYQRTPA
RGIFLLLLLLALSYCTAFMETLTISAFPYYSFQDPFMAFTVGSAFYGLYF
LVSFPAFFRLDEFKEGRLSLYQSAMDALGAGMLILILLDAVRLWLGMPLT
MAGQALRY
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mRNA from alignment at CM002473.1:161086..162750+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7718 ID=rna7718|Name=rna7718|organism=Nannochloropsis gaditana|type=mRNA|length=1665bp|location=Sequence derived from alignment at CM002473.1:161086..162750+ (Nannochloropsis gaditana)
AGCCCCCGAATCTGCTTCTACATGCACAGGTGTCTCACGTGAGGAAACAC
CCTCGGCTCACCTTGTGGTCGGACTCATGGCCTCCAAggcagcccctccc
tccgggtcaacctcctcccccttcaccaTCGCAGATGCTGCTAGGGCGGC
TTGGTCTTGCGTCTCGGacgtcttttccccttcgcctccgcctccgtcga
AGGATGACACCGCGGATATCACGGTGGTCATGACCCTTATCCTGCTCGGA
CAACTCGCTGTACTCTCGGTtgtcttcgtcttcctgaCCCCTGCcaaagg
cggaggccgctggctcccccccgccgacaCAGACAAAGGTAGGTGATCCT
TCGCTACCCCATCAAGGGCCTGTAAAAATTAATAGATACTCTTTCCATCA
AGTCATATCTTTACTCTTGCTTTGGGAGGATCGGAAAGGAAGATGCGCTG
GTGCTTGCACTTGACCCTCTCACCAccctctcaccctttccCAACCATAA
TCACTTTCCCAGGCGCATACGAGCGTTTCGTGCTAGCGTACTCTCCCGTC
TGGATGGGCGTGTTCGCCGTCATCATCGCGGGCCAACTGTACGAAACCTT
CACTGCTCACACCTACATGCTTGTTTGCACtaccctctgcctccccctct
ttttctaccccttcctcgcccccgcccttccttcccacgccccccccccc
aaagagGCCTCCGAGGGGGACAATActtcccttccgtcctcctcgaccgt
TCCGTCCCTGCTGCAGGGCTACCCCCTCAAGGCAACGGCCTGGCTAGCCA
TCTACTCGCACATCGGGAACTACTGGTACACGCACTACTTCTACACCGTC
CTTGGCGCCTCCTAcagcatgccctccctccgcctcaacGACGTACCTCT
GCCCCTCTACTTCGCCACCTTCTTCTACTTCTCCACCTACCACGCTTtat
ccaacctcctcctccgccgcgtcACCTCCGGCTACCAACGGACTCCCGCC
CGCGgtatcttcctcctcctcctcctcctcgccctcagcTACTGCACCGC
CTTCATGGAGACGCTCACCATCAGCGCCTTCCCCTACTACTCCTTCCAGG
ATCCCTTTATGGCCTTCACCGTCGGCAGCGCCTTCTACGGCCTCTACTTC
CTCGTGAGttttcccgcctttttccGCCTGGACGAGTttaaggaggggag
gttgagccTCTACCAGAGCGCGATGGATGCTTTGGGGGCGGGAAtgctca
tcctcatcctgctCGACGCGGTCCGGCTCTGGCTGGGCATGCCTCTAACC
ATGGCCGGGCAGGCCCTCCGTTACTGAAACCTTTCTCCCGAGGGTACCGC
GTGTAACGGTTATTTAAACATTCGAAGGAGGCCGGGTGATGTTGTGGTGC
AGTGAGGGACGCCGGAGAGGGGGATGTCTGGGTGCTGCGGACCAGGAGgg
gctcgggggggaggaggggaggaagcaaagcaACAGCCTTTTTGGAGGCG
GGTTCGGCAGGGTACTTGCGTCGAGAAATTTTATGTCTGGCAGGCGCCTC
CTGTCGCTTCGCTCTTCTCCCCGTTTCTCAGTAGCCTCGCGCCTGACTAA
ACTCAGTCCTTTTACCTCTTTACAgcattctccctcctcactctcccctt
ccctcctcactctcc
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Coding sequence (CDS) from alignment at CM002473.1:161086..162750+

>rna7718 ID=rna7718|Name=rna7718|organism=Nannochloropsis gaditana|type=CDS|length=2154bp|location=Sequence derived from alignment at CM002473.1:161086..162750+ (Nannochloropsis gaditana)
ATGGCCTCCAAggcagcccctccctccgggtcaacctcctcccccttcac
caTCGCAGATGCTGCTAGGGCGGCTTGGTCTTGCGTCTCGGacgtctttt
ccccttcgcctccgcctccgtcgaAGGATGACACCGCGGATATCACGGTG
GTCATGACCCTTATCCTGCTCGGACAACTCGCTGTACTCTCGGTtgtctt
cgtcttcctgaCCCCTGCcaaaggcggaggccgctggctcccccccgccg
acaCAGACAAAGGCGCATACGAGCGTTTCGTGCTAGCGTACTCTCCCGTC
TGGATGGGCGTGTTCGCCGTCATCATCGCGGGCCAACTGTACGAAACCTT
CACTGCTCACACCTACATGCTTGTTTGCACtaccctctgcctccccctct
ttttctaccccttcctcgcccccgcccttccttcccacgccccccccccc
aaagagGCCTCCGAGGGGGACAATActtcccttccgtcctcctcgaccgt
TCCGTCCCTGCTGCAGGGCTACCCCCTCAAGGCAACGGCCTGGCTAGCCA
TCTACTCGCACATCGGGAACTACTGGTACACGCACTACTTCTACACCGTC
CTTGGCGCCTCCTAcagcatgccctccctccgcctcaacGACGTACCTCT
GCCCCTCTACTTCGCCACCTTCTTCTACTTCTCCACCTACCACGCTTtat
ccaacctcctcctccgccgcgtcACCTCCGGCTACCAACGGACTCCCGCC
CGCGgtatcttcctcctcctcctcctcctcgccctcagcTACTGCACCGC
CTTCATGGAGACGCTCACCATCAGCGCCTTCCCCTACTACTCCTTCCAGG
ATCCCTTTATGGCCTTCACCGTCGGCAGCGCCTTCTACGGCCTCTACTTC
CTCGTGAGttttcccgcctttttccGCCTGGACGAGTttaaggaggggag
gttgagccTCTACCAGAGCGCGATGGATGCTTTGGGGGCGGGAAtgctca
tcctcatcctgctCGACGCGGTCCGGCTCTGGCTGGGCATGCCTCTAACC
ATGGCCGGGCAGGCCCTCCGTTACTGAATGGCCTCCAAggcagcccctcc
ctccgggtcaacctcctcccccttcaccaTCGCAGATGCTGCTAGGGCGG
CTTGGTCTTGCGTCTCGGacgtcttttccccttcgcctccgcctccgtcg
aAGGATGACACCGCGGATATCACGGTGGTCATGACCCTTATCCTGCTCGG
ACAACTCGCTGTACTCTCGGTtgtcttcgtcttcctgaCCCCTGCcaaag
gcggaggccgctggctcccccccgccgacaCAGACAAAGGCGCATACGAG
CGTTTCGTGCTAGCGTACTCTCCCGTCTGGATGGGCGTGTTCGCCGTCAT
CATCGCGGGCCAACTGTACGAAACCTTCACTGCTCACACCTACATGCTTG
TTTGCACtaccctctgcctccccctctttttctaccccttcctcgccccc
gcccttccttcccacgcccccccccccaaagagGCCTCCGAGGGGGACAA
TActtcccttccgtcctcctcgaccgtTCCGTCCCTGCTGCAGGGCTACC
CCCTCAAGGCAACGGCCTGGCTAGCCATCTACTCGCACATCGGGAACTAC
TGGTACACGCACTACTTCTACACCGTCCTTGGCGCCTCCTAcagcatgcc
ctccctccgcctcaacGACGTACCTCTGCCCCTCTACTTCGCCACCTTCT
TCTACTTCTCCACCTACCACGCTTtatccaacctcctcctccgccgcgtc
ACCTCCGGCTACCAACGGACTCCCGCCCGCGgtatcttcctcctcctcct
cctcctcgccctcagcTACTGCACCGCCTTCATGGAGACGCTCACCATCA
GCGCCTTCCCCTACTACTCCTTCCAGGATCCCTTTATGGCCTTCACCGTC
GGCAGCGCCTTCTACGGCCTCTACTTCCTCGTGAGttttcccgccttttt
ccGCCTGGACGAGTttaaggaggggaggttgagccTCTACCAGAGCGCGA
TGGATGCTTTGGGGGCGGGAAtgctcatcctcatcctgctCGACGCGGTC
CGGCTCTGGCTGGGCATGCCTCTAACCATGGCCGGGCAGGCCCTCCGTTA
CTGA
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Synonyms
Publications