rna7714, rna7714 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7714
Unique Name	rna7714
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	930
Alignment location	CM002473.1:156053..157027 -

Link to JBrowse

Properties


Property Name	Value
Product	enoyl-acyl carrier reductase
Orig transcript id	gnl\|cribi\|Naga_101053g1.4090.mrna
Orig protein id	gnl\|cribi\|Naga_101053g1.4090
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:156053..157027 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101053g1	gene7468	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7714	rna7714-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM22981.1	cds7693	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:156053..157027-
coding sequence from alignment at CM002473.1:156053..157027-

mRNA sequence

>rna7714 ID=rna7714|Name=rna7714|organism=Nannochloropsis gaditana|type=mRNA|length=930bp
ATGTCATCCTTTCGAAATGACAAAAAATCGCTACCCGCAATTTTGGGTGA
CACCTACGTGTATTTTGACCTGAGCGTGGGTGGTGTCCCGGAGGGCCGCC
TCGTCTTTCTCCTCTACAATCACGTGACGCCGCAAACGTGTGAAAACTTC
CGGGCGCTTTGTACCGGGGAGAAAGGTTTATCCAAATTTTCACGAAAGAA
GCTGCATTACAAGGGCTCTGTCTTCCATCGAATCATCCCGGGTTTCATGG
CTCAGGGAGGGGACTATACAGCAGGGAACGGGACAGGGGGAGAGAGCGTT
TACGGCCCCACCTTTCCCGACGAGAATTTCCGCGTCGAGCACGGGCGGGC
CGGCCTCCTCTCCATGGCCAACGCGGGCCCCGACACGAACGGCTCCCAGT
TCTTCCTCACCTTCCGCCGCACCCCCCACCTCGACGGGAAGCACGTGGTC
TTCGGAGAGGTCCACCGGGAGATCTTGCCGGGACAAAGGGCTGGACACGG
TCCTTCCCCCGATTTGAAATTCAAAATTTTGAAGCGGCTGGAGCGCGTCG
AGACGACGGGCGCGGATCTGCCTGTCTTGACAGAGAGGGTGGTGGTGACG
GGCTGCGGGGAGTGGGAGCGAGGGGGTGGGATGGAGGGAGAGGAGGAAGG
AGAGGGGAAGAAGAGGAAGAAGAGGAAGCGGGAGCATGTCTCGGATGCCG
AGGATGGCCGCAAGGAAGCCTCGGAAGAGGAAGAGGCACGTCGGAAGCGG
AGGAAGCAGGACGAGAGGAAGTGGAAGAAGAAGGAGAAGAGGAGGGAGGA
AGAACGGGTGGAGGGCGCGGAGAAGTCGAAGAGAGAGAAGAAAGAGAGGA
AGGCGAGAGGCAAAGAAGGCAAGAGGGAGTCTAGGAAGGAAAAGAAGCGA
AGAAAAGAGGCCAGGGAGCGGGAGGAATAA

protein sequence of rna7714

>rna7714-protein ID=rna7714-protein|Name=rna7714|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MVSLVQHFAPIMNEGGSVLSLTYIASEKVIPGYGGGMSSAKAQLESDTRT
LAYEAGRKYKLRVNTISAGPLKSRAASAIGGGEKGKKTFIEYAIDYSRAN
APLAQDLYADDVGSTGLFLSSPLARCVTGVTMYVDNGLHAMGMALDSIAM
QQE

mRNA from alignment at CM002473.1:156053..157027-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7714 ID=rna7714|Name=rna7714|organism=Nannochloropsis gaditana|type=mRNA|length=975bp|location=Sequence derived from alignment at CM002473.1:156053..157027- (Nannochloropsis gaditana)
TTACCTGACCGCCTCCAGCGCCTCCGCCTACTCCATGGTGTCCCTCGTCC
AGCACTTCGCGCCCATCATGAACGAGGGTGGCTCCGTCCTCTCCCTCACC
TACATCGCCTCCGAGAAGGTCATCCCCGGCTACGGGGGCGGTATGAGCAG
CGCCAAGGCCCAGCTGGAGTCGGACACCCGCACCCTTGCCTACGAGGCGG
GGAGGAAGTACAAGCTCCGCGTCAACACCATCTCCGCGGGGCCCTTGAAG
AGCCGGGCGGCCTCGGCGATCGGCGGGGGAGAGAAGGGGAAGAAGGTGAG
GGGGGGGGAGGCGGGGGAGGTTCAATGCGCGGGACGTGGATGGGGAGATT
TGGAGGGGGGGAGCTGTCGCATTGGATGAGGCACGGTCCCCGTCCTGACT
GGTGTGTGGATCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGACCTTC
ATCGAGTACGCCATCGACTACAGCCGCGCCAACGCCCCCCTCGCCCAGGA
CCTGTACGCCGACGACGTGGGCTCCACGGGCCTGTTCCTCTCCTCCCCCC
TCGCGCGATGCGTGACGGGCGTGACTATGTATGTGGACAACGGCCTCCAC
GCCATGGGCATGGCCCTGGACTCGATCGCCATGCAGCAGGAGTAGGGAGG
GAGGGAGGGAGGGCGGGAGGGAGGGAGGACATGGATGTGATGTATGTTGG
GGCACCGTCCCGCGAGGAGGTCTTCAAGTCTGCGTCGTCGGCGAGGCGGC
TGCTGCCGGAGGCGGGGCTGGGGAGCGACTCGTGGCAATGCGGGCGTGCT
GGGGAGGGCGGACGAGGCGTCTGAGGGAAGGAAAGTGAAAACATCGTGCG
TGCAAGGCCTGCTTTGTTGCTTTTTTTTGCTTTTCACGGCCTCCCCGGTG
GCTTCCGAGCCCGCATTTGGCGTCCTGGTCGGTCGAAAACGAGAACGACG
ACAAAAGGAAGGAAGCCCCTTGACT

Coding sequence (CDS) from alignment at CM002473.1:156053..157027-

>rna7714 ID=rna7714|Name=rna7714|organism=Nannochloropsis gaditana|type=CDS|length=924bp|location=Sequence derived from alignment at CM002473.1:156053..157027- (Nannochloropsis gaditana)
ACCTTCATCGAGTACGCCATCGACTACAGCCGCGCCAACGCCCCCCTCGC
CCAGGACCTGTACGCCGACGACGTGGGCTCCACGGGCCTGTTCCTCTCCT
CCCCCCTCGCGCGATGCGTGACGGGCGTGACTATGTATGTGGACAACGGC
CTCCACGCCATGGGCATGGCCCTGGACTCGATCGCCATGCAGCAGGAGTA
GATGGTGTCCCTCGTCCAGCACTTCGCGCCCATCATGAACGAGGGTGGCT
CCGTCCTCTCCCTCACCTACATCGCCTCCGAGAAGGTCATCCCCGGCTAC
GGGGGCGGTATGAGCAGCGCCAAGGCCCAGCTGGAGTCGGACACCCGCAC
CCTTGCCTACGAGGCGGGGAGGAAGTACAAGCTCCGCGTCAACACCATCT
CCGCGGGGCCCTTGAAGAGCCGGGCGGCCTCGGCGATCGGCGGGGGAGAG
AAGGGGAAGAAGACCTTCATCGAGTACGCCATCGACTACAGCCGCGCCAA
CGCCCCCCTCGCCCAGGACCTGTACGCCGACGACGTGGGCTCCACGGGCC
TGTTCCTCTCCTCCCCCCTCGCGCGATGCGTGACGGGCGTGACTATGTAT
GTGGACAACGGCCTCCACGCCATGGGCATGGCCCTGGACTCGATCGCCAT
GCAGCAGGAGTAGATGGTGTCCCTCGTCCAGCACTTCGCGCCCATCATGA
ACGAGGGTGGCTCCGTCCTCTCCCTCACCTACATCGCCTCCGAGAAGGTC
ATCCCCGGCTACGGGGGCGGTATGAGCAGCGCCAAGGCCCAGCTGGAGTC
GGACACCCGCACCCTTGCCTACGAGGCGGGGAGGAAGTACAAGCTCCGCG
TCAACACCATCTCCGCGGGGCCCTTGAAGAGCCGGGCGGCCTCGGCGATC
GGCGGGGGAGAGAAGGGGAAGAAG

Synonyms

Publications