rna7708, rna7708 (mRNA) Nannochloropsis gaditana

Overview
Namerna7708
Unique Namerna7708
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1045
Alignment locationCM002473.1:142232..143128 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102368g1.9999.mrna
Orig protein idgnl|cribi|Naga_102368g1.9999
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:142232..143128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102368g1gene7462Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7708rna7708-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22986.1cds7687Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7708 ID=rna7708|Name=rna7708|organism=Nannochloropsis gaditana|type=mRNA|length=1045bp
CCCCAGAGATCACCCCCGCCATGCACCGGTTCCCCCGCCGCTCCATCCTC
CTGATCGCCCTCCTCGACACGCTCTCCCTGGTCGTGATGGTGGTGGCGGG
CGCCTCCACACCCCCCGTCCTCACTGTCCTCTTCATGCAGGCCACCCTCC
CTTTCCTCCTCCTCCTCTCCTCCTGCCCGCCTTCCTTCCCCACCTGCTTT
GCCACTGCCAAGCGCCGGGAACAGAAGCGCTTTCATCGCGCGCACTGGCA
GGGGGGGGGATTGATCCTCCTAGGCATTGGTGTCGCGATGGCCCCCACCG
TGCACGTTGCCTTTTGGCACCGACAGACTGACATAGGCATCAACACCCTC
GCCTACGTGCTCTGCTGCCTGCCCGCCGCTGTCTCCCAACTGGCGAAGGA
ACAAGCCATCATCGAGTTTGCACAACCCATTAATTTTTACTACTTGAATC
TCCTCCTGGGAATATACCAGTTCGTCCTCCTGCTGGTGCTGTCCCCCCTG
ACGTACCGGCTCCAGGGGCTGGGAATGGGCTGGGACCCGTACGGGGCTAC
TGATCTGGGCACGGCCGTCTCGGACCTGTGTTTGTGCCTCTTCACCGCCC
GCAGCATTCCTCCAGGGCGCTATCCGATCGAGCCAGAGTGTCGGTACGCC
TCTTTAGCCACATTTTTGTACATACTCTGCACCCTGCTGGTCACCTTTGC
GGTCAACGGCGTGCTCGCCTCGGGGACCCCTCAAATGCTCTATCGGACCA
TCAATGGGTCGGTTGCCCTGGCTTTTCTGGCCCTGGCCGTGTATTCCGTG
AATAAATGGGCGTGGGTTTCCTCCTATGCTCTCAATGTCTTCGATTTCAT
TGGCCTCTTTTTGGTCCTGGCAGGCATGGAGTGGTACCACAGTCAGCCCG
AGCCCGACACGGAGATGCTCACGCAGTTTTCGCTGGAGGATGGGGAATTT
TTCTAGAAAGTCGAGAAGACCTTCGAGGACGCCGCTCCTCCGGCTATGCC
CTGATAATGCATACAAAGAACAAAGTTTGTGGACTGGAAAAAGGC
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protein sequence of rna7708

>rna7708-protein ID=rna7708-protein|Name=rna7708|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
ALALLISFPYLLRPKGGKKEEREEEGKEETKGEEEEKEERRRRRRMRMRM
RRMRRMRRRRRRRFRKGGAVPVAGRRLSKEGRRKRGRDGTTGKRRMGWEK
ERQSSQSREERVENVERTRQGRPPQLRISSDLREKNRDPFLPSSVYFRGL
KGGRRGGGWAGGRERSERKGKEWEVRASVPVPGLILLFAHFFPSKSGVSE
EDGRAKKLRRPLLLSSPYPSFWS
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mRNA from alignment at CM002473.1:142232..143128+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7708 ID=rna7708|Name=rna7708|organism=Nannochloropsis gaditana|type=mRNA|length=897bp|location=Sequence derived from alignment at CM002473.1:142232..143128+ (Nannochloropsis gaditana)
GCCTTAGCtctcctcatctccttcccctacctgCTGCGGcccaagggcgg
gaagaaggaggagcgtgaggaggaagggaaggaggagaccaaaggggagg
aggaggagaaggaggagaggaggaggaggaggaggatgaggatgaggatg
aggaggatgaggaggatgaggaggaggaggaggaggaggttcaggaaggg
aggcgcaGTACCCGTGGCCGGAAGAAGGCTGagtaaggagggaaggagga
agagagggagggatggaacgacggggaagaggaggatgggctgGGAAAAG
GAACGACAAAGTAGTCAAAGCCGCGAAGAGAGAGTAGAAAATGTGGAGAG
AACAAGACAGGGAAGGCCCCCACAGCTTCGAATTTCATCCGACTTGAGAG
AAAAAAATCGggatcctttcctcccctcctcggtctATTTCCGAGGcttg
aagggaggaaggagggggggagggtgggcgggagggagggagagatcaga
aaggaaggggaaggaatgggaagTAAGAGCCTCCGTCCCCGTTCCTGGGC
TTATCCTGcttttcgcgcatttttttccttcaaaGAGCGGGGTTTCTGAG
GAGGATGGACGAGCAAAAAAGTTAAGGAGGCCCCTTCTTCTGTCCTCACC
CTACCCCTCGTTCTGGTCCTAATTTTCATACATATACATGTACGTTTATG
TATATATCCTAATTCTCATACATCTACATAAACGTTTATATGTATATCCC
GCCCTATCCCTCTGTCGCCTTAGCATTCACACCCCAGTCGTATGGCTCGT
ACTCGAcctttacctccctcccttctccctcccttcctccaccgccctcc
ttgcctcctctgGAAACCATTGCACTACCCTCCTCAGCATTTCCTCC
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Coding sequence (CDS) from alignment at CM002473.1:142232..143128+

>rna7708 ID=rna7708|Name=rna7708|organism=Nannochloropsis gaditana|type=CDS|length=672bp|location=Sequence derived from alignment at CM002473.1:142232..143128+ (Nannochloropsis gaditana)
GCCTTAGCtctcctcatctccttcccctacctgCTGCGGcccaagggcgg
gaagaaggaggagcgtgaggaggaagggaaggaggagaccaaaggggagg
aggaggagaaggaggagaggaggaggaggaggaggatgaggatgaggatg
aggaggatgaggaggatgaggaggaggaggaggaggaggttcaggaaggg
aggcgcaGTACCCGTGGCCGGAAGAAGGCTGagtaaggagggaaggagga
agagagggagggatggaacgacggggaagaggaggatgggctgGGAAAAG
GAACGACAAAGTAGTCAAAGCCGCGAAGAGAGAGTAGAAAATGTGGAGAG
AACAAGACAGGGAAGGCCCCCACAGCTTCGAATTTCATCCGACTTGAGAG
AAAAAAATCGggatcctttcctcccctcctcggtctATTTCCGAGGcttg
aagggaggaaggagggggggagggtgggcgggagggagggagagatcaga
aaggaaggggaaggaatgggaagTAAGAGCCTCCGTCCCCGTTCCTGGGC
TTATCCTGcttttcgcgcatttttttccttcaaaGAGCGGGGTTTCTGAG
GAGGATGGACGAGCAAAAAAGTTAAGGAGGCCCCTTCTTCTGTCCTCACC
CTACCCCTCGTTCTGGTCCTAA
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Synonyms
Publications