rna7699, rna7699 (mRNA) Nannochloropsis gaditana

Overview
Namerna7699
Unique Namerna7699
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length914
Alignment locationCM002473.1:115228..117040 -

Link to JBrowse

Properties
Property NameValue
Productp-hydroxybenzoic acid efflux pump subunit aaeb
Orig transcript idgnl|cribi|Naga_101171g2.9559.mrna
Orig protein idgnl|cribi|Naga_101171g2.9559
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:115228..117040 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101171g2gene7453Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22996.1cds7678Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7699rna7699-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7699 ID=rna7699|Name=rna7699|organism=Nannochloropsis gaditana|type=mRNA|length=914bp
CAAGGGTGATATCTCCTTGAAAATCCCGCTCTCGTAGTATTATGTTTGTC
ATCTTTCCTTTTTCTACCCATAGCCGGCGAGGAGCTCGTCGGGCCTATCC
TGAATTACGTATGTTCTTATGTATTTTGCCATTCACCTAACCTCCACAGA
GCGCTTCGACCTTTCACACTTTCCGGCCGTACTTAGCCAATAGGATGGAA
ACGAAGCATGGCCTTTTTCGATTGACACCTTCTGTAAAGCTAATTGTCCT
CCTTGTGAGCGTGTGGCACCTTTCTTTCAATTTCCCCTCTACGTGTCTGG
CTTCTGCATTCTATCTCCACCCTACCCTCCCCACCGCCTTCATCCGCTGT
CCAAGCATTCCATCCTCCAACACATCGCCTAGGCCCAAATGCTTCCCTTT
CGTACTCTGTTTCTCCTCGACCTCTTCATCACCTCCCCCTCCCTCCGTCT
TCTCACCCCCCATCGTCATCCCCGACGCGCAACCCCTCTACCCCTTGAGC
GCCTTCGCCCTCCCTCACCATTTTCTGGCTGCAGGGGAACTCGAGGCCGT
GCTGTTGCCGTCCGGGCTCATCGAAGATCGGATCGATAAGATGGCGCAAG
ACCTCCTCGACGACCTTTTTCCCGCGCCATTTCCACCTCCGGGAGGATTG
CTTCCCGTGTGCGAGCTCCACCTCCTGTGCGTACTCAAAGGCGCCAGCCG
TTTCTTCCACGCCCTCCTGGCCAGCCTGCGTCGTCGAGCCCAGGCCCAAC
GGTTGCCGTTACAGATTCAAATTGAATTTATCACGGTCCGGAGCTACTCG
GGGATGCAGAGCACGGGCACGGTGGACGTGAGCGGGTGTGTCCTCGGCAA
CCTCCAGGGCCGGAACGTGGTGCTGGTGGAGGACATGATCGACACGGTAC
CTGCCCTCCCTCCC
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protein sequence of rna7699

>rna7699-protein ID=rna7699-protein|Name=rna7699|organism=Nannochloropsis gaditana|type=polypeptide|length=549bp
EKAGGARDDPRRGGLRNSQEAMMEGTKGGERRHGDGNEASEEKAPAPATS
SSIPSSPGTSPRPALPSFPSPTPTPCSPTTSPPSPPLSLPPSAPLSLPPF
ARALEMARQPLKVALAYVLVTLTMLILTGPRTPWGLIAVCQSLSSHPGSS
FKAGLQRIQGTVLGGMFGIVVLNWLQWDSNLAVVLSLTGWVFFCAFNRLS
PLYGEVALMAAVTAPIILMGPILGEAGAMIRIQQTILGSFIYVFVDNVFW
PVRAKLDLRRELLTSLGLFRDLWGRTFSIFLQKTDDPVHAIQTAQRVHAA
LTASCAMQETYITLAVDEPELWHKPFHAQAYRKVAKALARVSLFMAMLIR
ASQNFPLEISERDRALLTSIQEAVQELERMTAHALDQAWEAVARMTEREE
WREEEEGEEYETETEGQGRCSAVMPLGDGGDLPPPQPREGRASSHGAHRE
SSGHRPTRSAALPPDTVPALALLQLGEAYVKIQDWVDGYFEEHIKGNWAN
DHLVLVSADLILSLNGMIFAVEALGQGLLGVGHALRELVEREKGNYYML
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mRNA from alignment at CM002473.1:115228..117040-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7699 ID=rna7699|Name=rna7699|organism=Nannochloropsis gaditana|type=mRNA|length=1813bp|location=Sequence derived from alignment at CM002473.1:115228..117040- (Nannochloropsis gaditana)
GAAAAGGCAGGGGGTGCACGTGATGACCCCAGGCGGGGAGGATTACGCAA
CTCACAGGAGGCCATGATGGAGGGGACCAAGGGCGGTGAAAGGCGACATG
GAGACGGGAACGAGGCAAGCGAGGAAAAGGCGCCTGCCCCCGCCACCTCG
TCCTCCATCCCTTCCTCCCCCGGCACCTCGCCTCGCCCGGCCTTGCCTTC
CTTCCCCTCGCCCACACCTACCCCCTGTTCACCCACCACCAGTCCCCCCT
CCCCCCCTCTCTCCCTCCCTCCCTCCGCCCCTCTCTCCCTCCCTCCCTTC
GCCCGCGCCTTGGAAATGGCCCGGCAGCCCCTGAAAGTCGCCTTGGCCTA
CGTCCTGGTCACCCTGACCATGCTCATCCTCACCGGTCCCCGCACCCCCT
GGGGACTGATCGCCGTCTGCCAGTCACTCTCCTCTCATCCGGGTAGCAGT
TTCAAGGCCGGGCTCCAACGGATCCAAGGCACGGTATTGGGAGGTATGTT
CGGGATCGTGGTTTTGAATTGGCTGCAATGGGACAGCAATCTGGCAGTCG
TGCTTTCCTTGACCGGGTGGGTGTTCTTCTGTGCCTTCAACCGCCTCTCC
CCTCTCTACGGGGAAGTCGCGCTCATGGCGGCGGTCACTGCCCCCATCAT
CCTCATGGGGCCGATATTGGGCGAAGCTGGGGCGATGATACGGATCCAGC
AGACGATTTTGGGTTCCTTTATTTATGTCTTTGTCGACAATGTCTTTTGG
CCAGTCCGGGCCAAATTGGACCTTCGTCGGGAGTTGTTGACGTCCCTCGG
GCTTTTTCGGGACCTGTGGGGACGGACGTTTTCCATCTTTCTCCAAAAGA
CCGACGATCCGGTCCACGCCATTCAAACTGCCCAAAGAGTGCACGCGGCC
TTGACCGCGTCCTGTGCGATGCAGGAGACCTATATTACCTTGGCCGTGGA
CGAGCCAGAACTATGGCACAAACCTTTCCATGCGCAAGCCTACCGGAAAG
TCGCCAAAGCCCTGGCACGGGTCTCCCTCTTCATGGCCATGCTGATTCGG
GCTTCTCAGAATTTTCCTCTGGAAATTTCCGAACGAGACCGGGCCCTGCT
CACGTCCATCCAAGAGGCGGTGCAAGAGCTGGAAAGAATGACAGCACATG
CCCTCGACCAGGCCTGGGAGGCCGTGGCGCGAATGACTGAGCGGGAAGAA
TGGAGGGAGGAGGAGGAGGGGGAGGAATACGAAACGGAGACAGAGGGGCA
GGGGCGGTGCTCGGCAGTGATGCCGCTAGGGGATGGAGGAGACTTGCCCC
CGCCACAGCCAAGAGAGGGACGAGCCTCCAGCCATGGAGCCCACAGGGAG
AGCTCGGGCCATCGACCCACACGCTCTGCCGCCCTCCCGCCCGACACGGT
CCCGGCCTTGGCCTTGCTGCAGCTGGGGGAGGCCTACGTGAAAATTCAGG
ACTGGGTGGACGGGTATTTCGAGGAACACATCAAAGGGAACTGGGCGAAC
GACCACCTCGTCCTGGTCTCGGCGGATTTGATCCTCTCTTTGAACGGGAT
GATCTTTGCGGTGGAAGCCTTGGGCCAGGGTCTGTTGGGGGTGGGACACG
CCTTGAGAGAGTTGGTGGAACGGGAGAAAGGCAACTACTACATGCTGTAG
AAATGCTGATCTTTGAAAGAAGAGGGTCTGCACGCTTATAATGAAGCCTA
GCGAGGCATGACACCAGATAGAGAGCTTGGATGGGCGCAGATACGGTGCC
TGGGATGGGTGAGAGTGAAATTCATAGGGTGGAAAAGAAAATTTACCAAC
AATGTCTTCCTCA
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Coding sequence (CDS) from alignment at CM002473.1:115228..117040-

>rna7699 ID=rna7699|Name=rna7699|organism=Nannochloropsis gaditana|type=CDS|length=1650bp|location=Sequence derived from alignment at CM002473.1:115228..117040- (Nannochloropsis gaditana)
GAAAAGGCAGGGGGTGCACGTGATGACCCCAGGCGGGGAGGATTACGCAA
CTCACAGGAGGCCATGATGGAGGGGACCAAGGGCGGTGAAAGGCGACATG
GAGACGGGAACGAGGCAAGCGAGGAAAAGGCGCCTGCCCCCGCCACCTCG
TCCTCCATCCCTTCCTCCCCCGGCACCTCGCCTCGCCCGGCCTTGCCTTC
CTTCCCCTCGCCCACACCTACCCCCTGTTCACCCACCACCAGTCCCCCCT
CCCCCCCTCTCTCCCTCCCTCCCTCCGCCCCTCTCTCCCTCCCTCCCTTC
GCCCGCGCCTTGGAAATGGCCCGGCAGCCCCTGAAAGTCGCCTTGGCCTA
CGTCCTGGTCACCCTGACCATGCTCATCCTCACCGGTCCCCGCACCCCCT
GGGGACTGATCGCCGTCTGCCAGTCACTCTCCTCTCATCCGGGTAGCAGT
TTCAAGGCCGGGCTCCAACGGATCCAAGGCACGGTATTGGGAGGTATGTT
CGGGATCGTGGTTTTGAATTGGCTGCAATGGGACAGCAATCTGGCAGTCG
TGCTTTCCTTGACCGGGTGGGTGTTCTTCTGTGCCTTCAACCGCCTCTCC
CCTCTCTACGGGGAAGTCGCGCTCATGGCGGCGGTCACTGCCCCCATCAT
CCTCATGGGGCCGATATTGGGCGAAGCTGGGGCGATGATACGGATCCAGC
AGACGATTTTGGGTTCCTTTATTTATGTCTTTGTCGACAATGTCTTTTGG
CCAGTCCGGGCCAAATTGGACCTTCGTCGGGAGTTGTTGACGTCCCTCGG
GCTTTTTCGGGACCTGTGGGGACGGACGTTTTCCATCTTTCTCCAAAAGA
CCGACGATCCGGTCCACGCCATTCAAACTGCCCAAAGAGTGCACGCGGCC
TTGACCGCGTCCTGTGCGATGCAGGAGACCTATATTACCTTGGCCGTGGA
CGAGCCAGAACTATGGCACAAACCTTTCCATGCGCAAGCCTACCGGAAAG
TCGCCAAAGCCCTGGCACGGGTCTCCCTCTTCATGGCCATGCTGATTCGG
GCTTCTCAGAATTTTCCTCTGGAAATTTCCGAACGAGACCGGGCCCTGCT
CACGTCCATCCAAGAGGCGGTGCAAGAGCTGGAAAGAATGACAGCACATG
CCCTCGACCAGGCCTGGGAGGCCGTGGCGCGAATGACTGAGCGGGAAGAA
TGGAGGGAGGAGGAGGAGGGGGAGGAATACGAAACGGAGACAGAGGGGCA
GGGGCGGTGCTCGGCAGTGATGCCGCTAGGGGATGGAGGAGACTTGCCCC
CGCCACAGCCAAGAGAGGGACGAGCCTCCAGCCATGGAGCCCACAGGGAG
AGCTCGGGCCATCGACCCACACGCTCTGCCGCCCTCCCGCCCGACACGGT
CCCGGCCTTGGCCTTGCTGCAGCTGGGGGAGGCCTACGTGAAAATTCAGG
ACTGGGTGGACGGGTATTTCGAGGAACACATCAAAGGGAACTGGGCGAAC
GACCACCTCGTCCTGGTCTCGGCGGATTTGATCCTCTCTTTGAACGGGAT
GATCTTTGCGGTGGAAGCCTTGGGCCAGGGTCTGTTGGGGGTGGGACACG
CCTTGAGAGAGTTGGTGGAACGGGAGAAAGGCAACTACTACATGCTGTAG
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Synonyms
Publications