rna7697, rna7697 (mRNA) Nannochloropsis gaditana

Overview
Namerna7697
Unique Namerna7697
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length342
Alignment locationCM002473.1:110503..111519 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100938g1.8980.mrna
Orig protein idgnl|cribi|Naga_100938g1.8980
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:110503..111519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100938g1gene7451Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7697rna7697-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM22997.1cds7676Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7697 ID=rna7697|Name=rna7697|organism=Nannochloropsis gaditana|type=mRNA|length=342bp
ATGTTTGACATTCTGGGGGGGCTGCGCTCTACCTGCACCTACGTGGGGGC
AAGCAAATTGAAGGAGCTCTCCAAGCGCACCACCTTTATTCGGGTCACTC
AGCAGCTGAACCCGGTATTCGGACCCGATCAGAAGCCACAGCCGGCACCT
AAGCCTTCCCCACGGACGAATGACATTTGGCTGCAAAGGAACGGTAGACA
ACGGCCAAATTGGAAAAAGGCTTTTTTCAACTGTGGTGGGAATTTGGATT
CGGTTTACAGGAAACGTGAGGCAATGATTCGTGGCTTTTCCGCACGCCTT
TACCGTTTCTTTGCCCTGACCATTAAAAACTTTAACACATGA
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protein sequence of rna7697

>rna7697-protein ID=rna7697-protein|Name=rna7697|organism=Nannochloropsis gaditana|type=polypeptide|length=334bp
MPRGCLSPGVLPSFNVHPVAEDNICPSIGKPLSGRGPAALCEKSRKPTQS
SKLAVPNAPLPCSEALLNPSGFPFGKNKRRVELARMISSLLGDHVYTHEL
LEIILCKGTATMDVQLGFPDDKAHIHGDLSSGYEETGYACMDQDRWRNAY
FEAAIAEASAAKKASAEGLEVEEKGSMRPSCQASNNGPGPLHGHRHWLEI
GPGAMGTLSRLVLEAHPDNTLTAIEAVPSSARAVVKRLQRWYGREKRRRE
GGWGPGGGLAGRGVEGEGGELAVAKVKEERGGVSRERMEKGPRRSEGTRR
AGRSGGRQQGRTWRTAGKRGNVPVSGSCRGWQDT
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mRNA from alignment at CM002473.1:110503..111519+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7697 ID=rna7697|Name=rna7697|organism=Nannochloropsis gaditana|type=mRNA|length=1017bp|location=Sequence derived from alignment at CM002473.1:110503..111519+ (Nannochloropsis gaditana)
TAAATCCAAATAATGCCGCGGGGGTGCCTTTCGCCGGGTGTTTTACCTTC
TTTCAATGTGCATcccgtggcggaggacaaTATTTGCCCCAGTATCGGAA
AACCTCTGAGCGGCCGAGGTCCAGCAGCGTTATGCGAGAAAAGTCGCAAA
CCAACACAGTCAAGTAAATTAGCGGTCCCAAATGCTCCACTGCCATGCAG
TGAAGCACTGCTCAACCCGAGTGGCTTCCCTTTCGGCAAGAACAAGCGTA
GGGTTGAACTGGCCCGGATGATCAGCTCTCTCTTGGGAGACCATGTATAT
ACACACGAGCTTTTAGAAATCATCCTTTGCAAAGGAACGGCGACAATGGA
CGTTCAGCTAGGCTTTCCCGATGACAAGGCGCATATCCACGGGGACTTGA
GCTCGGGGTATGAGGAAACGGGCTACGCTTGTATGGATCAAGACAGATGG
CGGAATGCCTACTTCGAGGCGGCCATAGCCGAAGCCAGCGCAGCCAAGAA
GGCAAGCgcggagggcctggaggtAGAAGAGAAAGGGTCCATGCGTCCGT
CCTGCCAGGCGTCAAACAATGGGCCGGGGCCGCTGCACGGGCACCGGCAT
TGGCTCGAAATCGGCCCAGGGGCGATGGGGACACTTTCCCGCCTCGTTTT
GGAGGCGCATCCGGACAACACTTTAACAGCCATCGAAGCCGTTCCTTCCA
GCGCCCGGGCAGTGGTGAAGCGTCTGCAGCGTTGGTAtgggcgggagaag
agaaggagggagggcgggtggggccccgggggggggctggccgggcgtgg
ggtggagggggagggaggggagctgGCAGTGGCAAAAgtcaaggaagaaa
gaggaggagtatcgagggagaggatggaaaagggtCCGAGGCGGTCGGAA
GGGACACGTCGGGCGGGCcggtcaggagggagacagcaggggaggacgtg
gcggacggcgggaaagagggggaatgTGCCCGTTTCCGGATCGTGCAGGG
GCTGGCAGGACACGTAG
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Coding sequence (CDS) from alignment at CM002473.1:110503..111519+

>rna7697 ID=rna7697|Name=rna7697|organism=Nannochloropsis gaditana|type=CDS|length=1005bp|location=Sequence derived from alignment at CM002473.1:110503..111519+ (Nannochloropsis gaditana)
ATGCCGCGGGGGTGCCTTTCGCCGGGTGTTTTACCTTCTTTCAATGTGCA
TcccgtggcggaggacaaTATTTGCCCCAGTATCGGAAAACCTCTGAGCG
GCCGAGGTCCAGCAGCGTTATGCGAGAAAAGTCGCAAACCAACACAGTCA
AGTAAATTAGCGGTCCCAAATGCTCCACTGCCATGCAGTGAAGCACTGCT
CAACCCGAGTGGCTTCCCTTTCGGCAAGAACAAGCGTAGGGTTGAACTGG
CCCGGATGATCAGCTCTCTCTTGGGAGACCATGTATATACACACGAGCTT
TTAGAAATCATCCTTTGCAAAGGAACGGCGACAATGGACGTTCAGCTAGG
CTTTCCCGATGACAAGGCGCATATCCACGGGGACTTGAGCTCGGGGTATG
AGGAAACGGGCTACGCTTGTATGGATCAAGACAGATGGCGGAATGCCTAC
TTCGAGGCGGCCATAGCCGAAGCCAGCGCAGCCAAGAAGGCAAGCgcgga
gggcctggaggtAGAAGAGAAAGGGTCCATGCGTCCGTCCTGCCAGGCGT
CAAACAATGGGCCGGGGCCGCTGCACGGGCACCGGCATTGGCTCGAAATC
GGCCCAGGGGCGATGGGGACACTTTCCCGCCTCGTTTTGGAGGCGCATCC
GGACAACACTTTAACAGCCATCGAAGCCGTTCCTTCCAGCGCCCGGGCAG
TGGTGAAGCGTCTGCAGCGTTGGTAtgggcgggagaagagaaggagggag
ggcgggtggggccccgggggggggctggccgggcgtggggtggaggggga
gggaggggagctgGCAGTGGCAAAAgtcaaggaagaaagaggaggagtat
cgagggagaggatggaaaagggtCCGAGGCGGTCGGAAGGGACACGTCGG
GCGGGCcggtcaggagggagacagcaggggaggacgtggcggacggcggg
aaagagggggaatgTGCCCGTTTCCGGATCGTGCAGGGGCTGGCAGGACA
CGTAG
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Synonyms
Publications