rna7692, rna7692 (mRNA) Nannochloropsis gaditana

Overview
Namerna7692
Unique Namerna7692
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1072
Alignment locationCM002473.1:78688..78968 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100853g1.10593.mrna
Orig protein idgnl|cribi|Naga_100853g1.10593
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:78688..78968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100853g1gene7446Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7692rna7692-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23002.1cds7671Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7692 ID=rna7692|Name=rna7692|organism=Nannochloropsis gaditana|type=mRNA|length=1072bp
CAACCATAAAGCCACTGAAACCACGCAAACAAGATCTTGAGGATCCCACA
TTCCTTCCAGATTCTTAAATATTAAGTTCCTGACCGAATGCCTCCCTGAT
GGCTGGTTTTGAAAGCTGTTTACGGTCCTTTTGTGCACTCAATCAAATCA
GAGCACTTGCCCCTCCGACGCACTCAGACCGATACCCCGCCCTCCTGAAT
AACATCTGCGATCTATCCAAACACATAGACCCTCGACGCACACAATCTTC
GTCTTCCGCAGCGTCACTTTTCCGTCGACGCGGACCAGCATGCGTCCGAA
ACCTCCTACGTCTTCAGGGACGTCTACCCTCTCCTCCCAGCCGTCTCCTG
CCGGCCTCCCTCCCCCTGTCATTGCCCCTGAGGAGAACAGCTCCCTGCAT
ATGGGCCACCGCGCCGCTCCCTCCCTTCCTCTTCACGACGCCAGCTCATG
CTCCGGCAGCAATGCAATCAGCAGAGACCGTTTAAAGGCATTCAATGAGA
CGAATCTCCTCCGCGAGAAGGAGGTACAGCCAGGGGCCGCGTCCTCCTCC
CGCCCTTCCCCCTTCCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTTCATATTCTCCTCCTCCTCCACCTCCTCGCCCGAACGAGGTGGCTCCC
TCGACCATCCCCAGCCGTCAGGACCAGAAATGGAAGGCAAAGGACACGTG
GGGAGGGAAAGAGAAATAACCAGGGTGGTGGAGTTGATGGCGTCCGAAGG
AGGAAGGAATAACCATGAAAGAGGAGGGGAAGGTGATAGAATCCATGCAA
GGAAGACAGAGGCAATGAGGAAGGGTGGGGCGCCAGCCCCGTACCCTCCT
TTCCCCCCGTTGACAAGGCAGGGCGGAAGGGAGGGCGGGGGGGAGGGAAG
GAGGGAGGAGGAGGTTGCGATGGCGTGTTCGGTTGCATTGCCATCCTCGT
ATTTCTTGCCCCCCTCCCGGAGGGAGCGCCGCGAGAAAGTGATGAAAGAG
TCGGCGAAGGTACGGTGGGAGGGAGGGAGGGCGGACAGGAGGGATGGGAA
GGGAGAAGGGAAGGAGAGATGA
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protein sequence of rna7692

>rna7692-protein ID=rna7692-protein|Name=rna7692|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
MREEGKEKRMEIKGCIRVVQVLREPMCHALKWYFSVADTSRKSGIVSVVC
ILHGQRTMTRMMKKASDSW
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mRNA from alignment at CM002473.1:78688..78968-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7692 ID=rna7692|Name=rna7692|organism=Nannochloropsis gaditana|type=mRNA|length=281bp|location=Sequence derived from alignment at CM002473.1:78688..78968- (Nannochloropsis gaditana)
ATGCGGGAGGAAGGGAAGGAGAAGAGAATGGAAATCAAAGGTTGCATTCG
GGTCGTACAGGTCTTGCGTGAGCCCATGTGTCACGCCCTTAAATGGTACT
TCTCTGTCGCAGATACCTCAAGAAAGTCTGGCATTGTATCCGTAGTGTGT
ATATTGCATGTACCTTAGGAAATCTCCACCGTGGAATCCATCGCACGTAC
GCAGTAGGAGCGGGATAGGGTGAGGGGTAGGGTCAACGGACGATGACGCG
TATGATGAAAAAGGCCTCAGATTCATGGTGA
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Coding sequence (CDS) from alignment at CM002473.1:78688..78968-

>rna7692 ID=rna7692|Name=rna7692|organism=Nannochloropsis gaditana|type=CDS|length=420bp|location=Sequence derived from alignment at CM002473.1:78688..78968- (Nannochloropsis gaditana)
GGTCAACGGACGATGACGCGTATGATGAAAAAGGCCTCAGATTCATGGTG
AATGCGGGAGGAAGGGAAGGAGAAGAGAATGGAAATCAAAGGTTGCATTC
GGGTCGTACAGGTCTTGCGTGAGCCCATGTGTCACGCCCTTAAATGGTAC
TTCTCTGTCGCAGATACCTCAAGAAAGTCTGGCATTGTATCCGTAGTGTG
TATATTGCATGGTCAACGGACGATGACGCGTATGATGAAAAAGGCCTCAG
ATTCATGGTGAATGCGGGAGGAAGGGAAGGAGAAGAGAATGGAAATCAAA
GGTTGCATTCGGGTCGTACAGGTCTTGCGTGAGCCCATGTGTCACGCCCT
TAAATGGTACTTCTCTGTCGCAGATACCTCAAGAAAGTCTGGCATTGTAT
CCGTAGTGTGTATATTGCAT
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Synonyms
Publications