rna7680, rna7680 (mRNA) Nannochloropsis gaditana

Overview
Namerna7680
Unique Namerna7680
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1413
Alignment locationCM002473.1:44113..45677 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100698g2.3513.mrna
Orig protein idgnl|cribi|Naga_100698g2.3513
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:44113..45677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100698g2gene7437Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23012.1cds7660Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7680rna7680-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7680 ID=rna7680|Name=rna7680|organism=Nannochloropsis gaditana|type=mRNA|length=1413bp
GCACGAAACCTAGGATTTAGAAGAGGGAGAAGAGTAGAGGGAGGGAGAAG
GGGAAGGAAGGAAGGATTGCCCACACGATGACCTATTATATGGTGGATAG
CTGAAGGTCTTGGGGATCGAAGTGCAGCCCTTTGTGTTGTTTTCATGCTA
TTTCCCGTCCCTCTTCCCTCTCTTCCTCCCCCTCCCTCGTCTCCGTGTCT
ACCCAGATTAAGGAGCTGGCTGCCAATGCCCGTTTGGACGGTTAAGGCCC
CTTTCCGACTCCTTTCCCCTCCCTACCAACCCGTTTTCAATTGGAAATGC
CGACTGTTTTCCACTGCCTCCCAACCCTCTTCCAATTGGAAATGGGAGGA
GGTACGAGGGACGAAAGCGGGGCGGGGGCGAGGGAGGGAAGGAGGGAGGG
AAGGAGGGAGGGAAGGAGGAGGAGGGAAGGAGGGAGGGAGAGGAGAGGAA
AATGTACGCGTCCTCCTGTCACGCCAGGTGCACCAAAGACAGTTTACGTA
GGGATGATAGCCCGTATAGAAGAGACTTAAAAAGAACGAGGGAATTCGAG
GGAAAGAAAAGGGAAGGACGGAGTGGAAGCGAAGAATAGCATGCATGTAT
GTAGGGAAAAGGAAATAGAAGGAGAGCAGAGGGATGGTCCGGATGGCTCT
TGGAGAGAGCTTCCATGATCTCCTTGCTCTTATTGGGGCTTTGCTGGGAC
GATGTCCTCTAGAGGGAGACAGGGACGGGAGAAGGAAAGGGCAGAGAGGG
CGAGTCGATAAGCGGAAAAGGTAGGAAATAGCTCGTACAAGGGCGAAGAA
ATTCTCCTCCCCATGGATTATTCGGACGGAGAGAAGAGGGAGACAGTGGG
CAGAGAAGAAGTTGTGGCCGTCATTCACTTGGGAGGGTCCTGAGTGTTTG
TCGTGCGGCTACTCCACAAAAAGGACTCTATAGCTTGAGACGCTCTCTTT
CGTCGGATGTCTCTTGTCTCTGAACAAAGTATCGCTACACTGGAGAAAAA
GATAGAATTACAGAATGGACTTTCACGCATTGAGAAAAACACACTCCGAA
GTTAGCAAAAAATTACATGTGCAGACGGGTGGAGAGAATTGAGCGCGAGG
ATACATTGCATAGTTTTTGCATTCCTTTCTGTCCCCGTATCTCGTTGCTT
TATCCCCAGCAAGCTGCCATCGTCGTATCTATTTGTCGTGTCGTCGTCAT
CGTCATCGTTCATTCGTAATGGGTTCAAGAGGTCACGCCAGACGATGCTC
ACCCTCTTGGGCTTGATAAGCATGCAAAGAGACTAGGTCATCCAATTGTT
GACATTGATGATAAAATTAAGACTTATGATAAAATAGGCGAACATAAGAA
ACAGAGACTCTATTAGTAAGCACTAAAAAAACAAAGATCTTTAACGATGA
CACAGATGCTTCA
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protein sequence of rna7680

>rna7680-protein ID=rna7680-protein|Name=rna7680|organism=Nannochloropsis gaditana|type=polypeptide|length=141bp
MASLSAASMNLCTSPTPLTNSAANSFSVDSVPTQRMDIKRRWPHRPQEVP
SSEFIRPKTTWERVEDAEEGGREGTHEAGQIGPPHHRRNVDWVRAFRSCL
LSMTHKQEELETKRERSEDEKERKEVEVMHCLAEGMGVLGA
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mRNA from alignment at CM002473.1:44113..45677-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7680 ID=rna7680|Name=rna7680|organism=Nannochloropsis gaditana|type=mRNA|length=1565bp|location=Sequence derived from alignment at CM002473.1:44113..45677- (Nannochloropsis gaditana)
AAAATCCTTCTTGTGAGCGAAGGAACTGACAACGGTGAAAAAAATTGAGC
TGGACTGTCTGTCTTTTCTTCTTTGGGGTCCAGTTGACATGAAAAGCCAG
CCATTGCAATCTTATGAAAGGACTTTCACCGACAGCAAAGTCGTCCTTTA
CACGCTTGTATCCTACCGGCTTTCAATACAGTCGAGTTCCCTTTTAAAAT
CAGCGACATAGCGGGTATTCTTTTGAGAGGATGAATAAAAAAATGGGCCA
ATACGCGTGACAGCATGCATGAATGTAGCGCGTTTTGATGTTGTTGTTCT
CAACGAAGAGTATTTGGAATAATCCTGCTGGATTCGCGAAGAGTCACGTC
ATATGAAAGTGCGGCACTCTCAGCCCTCTTTCTTCGATGTTCTGTTCATC
CATTATAAGCCTTTATGTCGTACCTGGTATTCATATAACACATTCTTTAT
CATGGTCATGCAACATTTCACGGAGCACGAGCTAATTGGCTCTTCCTATC
TACCCCCCATGACAAATTTCTTCGCTGCACAGTGATTTGACCCGCAGATC
GAATTACTCGATGGCTTCTTTGTCTGCAGCATCCATGAACTTGTGTACGT
CGCCCACTCCTCTGACCAATTCCGCTGCGAATTCTTTTTCTGTTGATTCT
GTGCCTACCCAGAGGATGGATATCAAGAGAAGGTGGCCTCACCGTCCGCA
AGAAGTACCCTCCTCGGAGTTTATTCGACCAAAAACCACTTGGGAGAGGG
TGGAAGATGCGGAGGAGGGGGGGCGGGAGGGAACGCACGAGGCAGGGCAA
ATCGGCCCCCCCCACCATAGGAGGAATGTAGACTGGGTACGGGCATTTCG
GTCGTGCCTCCTTTCAATGACACACAAACAAGAAGAGCTCGAGACGAAGA
GGGAACGAAGCGAGGATGAAAAGGAGAGGAAGGAAGTGGAGGTCATGCAT
TGCCTAGCTGAAGGTATGGGGGTTTTGGGTGCTTGAATGGGGCACCAAGT
GGTGAAGGACGAGAGAAGAGGATGGTAGGAAACAAAAGCTGAAGATATTG
GGTCGGTAGAAGGGAGTGCTGAGTAAGGCCAAGCTATGAGTGGTTATAAC
TCATAGAATGAGAGTGTGAAGAAGGGTTAAACAGAAGAAGGGTTTAACAG
TCCACATATACGGGATGAACAAAACTACTATCAGATTTTCTCGAGGAGAG
GAACTCAAAAGGACAGGAGCAAGTGACAACGAGCAGAGGGAAACGTGCGC
TCATGTAGGGGGGGAGGCACGTCTAATGAGAAGAGGACAGATATGTTGAA
GAAGAAGCTGAGATGTTGCAGAAATCAATCTGTATGATTACTTATGTGTA
TATATATACATATATATACATACGTACCCCACTCAAAACATCGGAGAAGG
GGAGTGCAGGAAAAAGAAAGGTATGAGCCACCATCTTTTGCGCACTGAAG
AAACTGAGAAAGAAAATTAAAATGTCTGTCGAGGGTGGCAAGCGTGGCGC
TCCACAGCGCATAAAATATACGATCTTTGCAAAAAGATCAAGTCAAGAGA
TCGACCTTGAAGCAT
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Coding sequence (CDS) from alignment at CM002473.1:44113..45677-

>rna7680 ID=rna7680|Name=rna7680|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002473.1:44113..45677- (Nannochloropsis gaditana)
ATGGCTTCTTTGTCTGCAGCATCCATGAACTTGTGTACGTCGCCCACTCC
TCTGACCAATTCCGCTGCGAATTCTTTTTCTGTTGATTCTGTGCCTACCC
AGAGGATGGATATCAAGAGAAGGTGGCCTCACCGTCCGCAAGAAGTACCC
TCCTCGGAGTTTATTCGACCAAAAACCACTTGGGAGAGGGTGGAAGATGC
GGAGGAGGGGGGGCGGGAGGGAACGCACGAGGCAGGGCAAATCGGCCCCC
CCCACCATAGGAGGAATGTAGACTGGGTACGGGCATTTCGGTCGTGCCTC
CTTTCAATGACACACAAACAAGAAGAGCTCGAGACGAAGAGGGAACGAAG
CGAGGATGAAAAGGAGAGGAAGGAAGTGGAGGTCATGCATTGCCTAGCTG
AAGGTATGGGGGTTTTGGGTGCTTGA
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Synonyms
Publications