rna7675, rna7675 (mRNA) Nannochloropsis gaditana

Overview
Namerna7675
Unique Namerna7675
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length894
Alignment locationCM002473.1:30449..30895 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_102379g1.9459.mrna
Orig protein idgnl|cribi|Naga_102379g1.9459
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:30449..30895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102379g1gene7432Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7675rna7675-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23018.1cds7655Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7675 ID=rna7675|Name=rna7675|organism=Nannochloropsis gaditana|type=mRNA|length=894bp
ATCCGGAACCGTTGAGCAGGCCCGATCCCATGTCCAATTGGAGAAAGATT
TATGCCATCTTCATGCAGGATTTCTTAATTGTACTCTTTTGAAGCTACCA
ATATCGTATGCGTTACATTCTATGCAAATGACTGATGCACAGTGAGCACT
TTGAACATGGATATACGCATCGAAGTTTTCACTCTTGTACCGCTTTACCT
AGGCAGATCGGCTACCGAGCGTTTATTGCCTGTTGCCCAAACAATGTTTT
CAAAGTTGTTCAAGAGCCACAAAAAAGATGAACCTTTAAAGCCATTTCAA
GGGGATCTGGAGGGACTTTGGTATCTTGAGGGGAAAGCTTACGACTTGAC
GAAATTTGTCAAAATGCACCCAGGTGGAAGCGACGTGCTTCTGGAATTGA
AAGGAAAGGACGGGACAGCTGCGTTTCGAGATGCTCATGGCAACAATCCA
ACTTCTACTCCCCGTAAAAAATTGGGACGCATGGAAGTGAAAGGGATAAG
TGCAGAGGTCTTGTCCTCGAGATTTTCCGGGGATCGAGATCAATGTCCGC
CCTAAAAGGCATGAAAGGACCGGGTCATAGGCGGTGGAGAAAATGAAATG
GGCTGGCAATGAGGGTTTTGAATTCGAGAAGTAAGTGTTGATTGAAAAAA
GATGGGGGGGAAAGTGGAGTAAGGGGATGGAAGATTTGGGGAGGTGATTC
CAGTTTGTAGATCTGTATGTACGGTTTGGGAGCTCCTCAACACTCTGCGG
TCATCGAAAGCCCACGTGACGTTCCTGCTTAAAAGCAAGATGACGAGGAC
GTTGAGACGCTGGGCTCTTTAGTTTTCGAAGGAAACTGACCACCTTCATT
GTTCTTTGCTTTATATTCAACGGATCCTTCCATACTATTCCTCC
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protein sequence of rna7675

>rna7675-protein ID=rna7675-protein|Name=rna7675|organism=Nannochloropsis gaditana|type=polypeptide|length=148bp
MYSCHKISRNGAGSRRDKEGGRGGGRERGRGGGREGGRGGGRERGRGGGQ
EGGRGGGGGAIDIPAHGRGRGGDLFQTGGEGGREGGKEGGREGGREGERG
GREGGREGGPREGRAMGDEGSTARRGVNVSGTGGGRMVASCLIVAFTL
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mRNA from alignment at CM002473.1:30449..30895+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7675 ID=rna7675|Name=rna7675|organism=Nannochloropsis gaditana|type=mRNA|length=447bp|location=Sequence derived from alignment at CM002473.1:30449..30895+ (Nannochloropsis gaditana)
ATGTACTCATGTCATAAGATTTCTAGGAATGGGGCCGGGTCACGCAGGga
caaagaaggagggagaggcggaggacgggaaagagggaggggcggaggac
gggaaggagggaggggcggaggacgggaaagagggaggggtggaggacaa
gaaggagggaggggtggaggagggggggccaTTGATATTCCTGCACATGG
GCGTGGACGCGGAGGCGACCTGTTTCAAactggtggggagggagggaggg
agggagggaaggagggagggcgggagggagggcgggagggagaaagagga
gggagggagggagggagagagggagggccaagagaagggagggcaatggG
CGATGAAGGCAGTACAGCGAGAAGAGGAGTGAACGTGAGTGGaactggag
gagggaggatggttGCCAGTTGTCTCATCGTTGCCTTTACTCTGTAG
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Coding sequence (CDS) from alignment at CM002473.1:30449..30895+

>rna7675 ID=rna7675|Name=rna7675|organism=Nannochloropsis gaditana|type=CDS|length=447bp|location=Sequence derived from alignment at CM002473.1:30449..30895+ (Nannochloropsis gaditana)
ATGTACTCATGTCATAAGATTTCTAGGAATGGGGCCGGGTCACGCAGGga
caaagaaggagggagaggcggaggacgggaaagagggaggggcggaggac
gggaaggagggaggggcggaggacgggaaagagggaggggtggaggacaa
gaaggagggaggggtggaggagggggggccaTTGATATTCCTGCACATGG
GCGTGGACGCGGAGGCGACCTGTTTCAAactggtggggagggagggaggg
agggagggaaggagggagggcgggagggagggcgggagggagaaagagga
gggagggagggagggagagagggagggccaagagaagggagggcaatggG
CGATGAAGGCAGTACAGCGAGAAGAGGAGTGAACGTGAGTGGaactggag
gagggaggatggttGCCAGTTGTCTCATCGTTGCCTTTACTCTGTAG
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Synonyms
Publications