rna7672, rna7672 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7672
Unique Name	rna7672
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2486
Alignment location	CM002473.1:23679..24743 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101592g1.1339.mrna
Orig protein id	gnl\|cribi\|Naga_101592g1.1339
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:23679..24743 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101592g1	gene7428	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7672	rna7672-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23020.1	cds7652	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:23679..24743-
coding sequence from alignment at CM002473.1:23679..24743-

mRNA sequence

>rna7672 ID=rna7672|Name=rna7672|organism=Nannochloropsis gaditana|type=mRNA|length=2486bp
ATGAATAAGACACCCCTCTACACGAATTTACGAAGTGGAGAGGATACACG
AAAGGCACGTGCAACCTTTGATTCTTCACAAGATGCTTTGAGTAGCCGGG
GTGTTGAGAGGAGCGAAGCGCTCTCAGGCACCGCGCAGGGCGGCAAATTT
GATGATGAGTCCTCACGGGCTCTACTGGCCCGCGAAACCACAAGTAGCGG
CGCAACTGTTCTGGGAGAGGAGCTAACCTTTGAAACGCAGAACTTTGCTG
CTGCTGATTTTATTCAGGACTACGCTATCATCTTCCAGGCTCCACTCGGA
ACACCGCTGAGAATGGATGTAACAGTCGTCCCCCTTGTAACACGCGACGG
CGAACCATCGCTTTCTCTTGGGACAGCGAAGAGCATGGTCTGTCTTCCTG
GCAGTGCAGAACAAGGGCTCTCGAATATCGATGCTGGTGTTCCTAAGAGG
ATTTCCGCGGAGGCTGCCTGTCCGGTGTTCCCTATGCGAGCGGACTCGCA
ATCTCGAGTCTTGGACAGTGACTCATTCGATGGCCTTCATCCCGAGGAGA
AGGAATGGGTGGAGCAGCGAATGCTGAAGACCGGGCCCAAGCTCGCTGAT
TTTATAGAGCGCAATCTCTTCCCGATGAGCGTTTCGACCCCTCCTGATCT
CAAAGTGGCCATCACGGTTTCAGGGGGAGGGAAGCGTTCTGTTTTTAATG
GGGGAGGGGTCTTAGCTGGTTTGGCTGAAGCGGGTGTTCTGGATTTGGCA
ACGTGGATCTCAGGAGCCTCGGGGGGAAGTTGGCTTTTGGGAGGGTTGTA
CGAGAACAGCATGCAGAAGGACGGTTTAGATATAGACTCTTTCTTTGCAG
AGCGTGACATGGAGATGGGCAAGAGCCTTTTTGACGGCACTTTTAGCGCG
AATGATGTTCTAACCAATTTGGGCGTGAATGGGTGGTTCATCCCGACGGT
CAAACCGTTCAAAACTCAGCCTTCAGCGGCAGCAACATCAGCCAGCATTA
TGTGTCAAACTGAGCTCAAATTCCAAAGCGCAGCGATCAAATCTTTGCAG
ACAAAAACCTACGCATTTGCCGAATATTGGGGCCGGGCTGTGGCTTTTCA
GTTACTGGCACAAGATGGCGGTCTGGGTACTACTATGTCAGGGCTGCTCA
ATCACAACTTGCTTGCCGATCACAACGCCCCCTTGCCCTTTATGTTGATA
CAAACTGACCAGGGAGAAGTGCCCTATTTCTTAGAGGTTTCGCCATTTGA
TGTGAGCGTGCATAAGGGGGACGTGCATGTTTCTTACCCTACAGCACTGC
TGGGAACCGATGTTTCTGATGCGAGTCAGAACTGTACAATCCAATCTGAT
CAACTAGCGTGGATCATGGGCTTGTCATCATGGCTTCTTCCCTTATCTGT
ACAAATGAGTGGGGGCTTACTAGATACGCTTCTTTGCGGAGCAACGGGAG
ATATATGCAAACCATTAGCGATAAATAATCCTTTTCTTGGACATACGGGG
CAGAGTCAAGCTGCAGATCCACAGGAGTTGTTCAGCGCAGCTGAAACAAA
AGTGGTAGACGGCGGTGTTACCTACAATGATCCTTTGTGGCCATTTATCA
CGCCAACACGAAAGGCGGACGTGGCGATCGTCATTGACCAAGGTGGGGCA
GAGGGTGATCCACCCTTGTCGATGGCCCCCCCCGCCACCTGCGCAGCTGA
TGGAGCAGGAACATGTGCTGTTGGATCATCCTCAGATGAGGGCTTGAGCA
ACACGTGCTGCAACACCTGCGTGTCCGTTACCGGTTTCGGTTGTTGGCCG
ACATCGGACATGAGCCAGAATAATCTGTTCCGCTTTTCTTCCTATAGCGA
TGAACACACTTTACCAGGTGATATTCTAACAGCAAACCTAAATGCTTCTA
CGCTTACCTCAAAAGTGAGTTTCTTTGGATGCCGCGAGCCCAATGTCACG
GCGATTGTGTATATTCCCAATCGGGTGGTTTCGAGCGCGAAAGGCGGATT
TTCAGCACTTCGCGGCTCCATGGAGCCAAACGACTACTTTGACCTTCTTG
GAGGAACACCACTTTCAGCATCCGATATTCATGATGTAGTCCAAAACGGA
AAAGACCAAGTGAGTGCACCTGACTTCAACAGATGCGTCGCCTGCTTGTT
CGCAGCCTCTTTGCCGGAAAACAACAGAGAAACCTTCTGGGATGCCACGT
CAGATTGTACTGACTGCATCGAGACCTACTGCCAACCATTACAATGAGTG
GAGCTGGTACAAGGTGAAATATTTCGCAGACGTTTAGCCTCTAGGCATAC
AAAAATACAAGGGTCTAGCAGAAGTATCTGTAGGCATCTGAGCGACTATC
CAAGTCTAAGCATTCGAAAATCCCAGGATCCATTTCCTCCGCATCCGTTG
CGGTCAGGATGTTGTGGAATTTCGACTGGGTCATCCACGGGAAAAAGCAT
ATTGAAGAAACAGGAAAAAAAAAGACGATTGCGCGA

protein sequence of rna7672

>rna7672-protein ID=rna7672-protein|Name=rna7672|organism=Nannochloropsis gaditana|type=polypeptide|length=172bp
MRPPPATLGLTRGGGVTAMILCILHRRGGILSFVQAFRPPVHLPARLSHA
AAAAISPLLVSAASSPPSAPPSFFSLAAMRRRGDHGDGREGGQGRRGWVT
QQAAASSSSSSSSSSSRSATCALTGAATVLAASATSAEMQGELEVREGAR
AKDHRPKVRLALPPSSPPXPPP

mRNA from alignment at CM002473.1:23679..24743-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7672 ID=rna7672|Name=rna7672|organism=Nannochloropsis gaditana|type=mRNA|length=1065bp|location=Sequence derived from alignment at CM002473.1:23679..24743- (Nannochloropsis gaditana)
ATTTGTGAAGTCGGCTTGATAACAAAGCCCTTGGCGTCGCATCAGCCTCA
CCCACCTCCTCCCTCCCTCTCCATCCCTTTCCCTTCGTTTCAAATCTGAA
CAAATGCAAGGACACTGAGCCATTTATGCGTCCACCGCCTGCAACGTTGG
GTCTTACGCGAGGTATCGATTTTTTTGCGATATTCGCTTCCTCCCTCCTC
TTCTCCCCCCCCCTCCCTCCCTCCCTCCTCCTTCCCTCTTTTCGTTCTTC
ATCGTCAATGACATGGCTCCAATCTTTCAGGTGGCGGTGTAACGGCTATG
ATTCTTTGCATACTCCACCGTCGGGGTGGCATCCTCTCCTTCGTGCAGGT
GGAAAGGGCCTGGTTGAGATTGGGAGGGAAGGGGAGGAGATGGAGGCGCG
GGTCTTTTCTCCTTTGTGGTTGGGGAACAAGAAGGAAAGTGCAGTAACAG
GATGCGCACAAAACCGAGAACATGTCTTGCATTCTCATCACCTTCCTTCC
CCCGTACCACCCCTTTTCCTTTCACCCTTTTCCTCCCTCAGGCCTTCCGC
CCCCCGGTACACCTGCCTGCTCGCCTCTCCCACGCCGCCGCCGCCGCCAT
CTCCCCCCTCCTAGTCTCGGCAGCGTCCTCTCCGCCCTCTGCTCCTCCCT
CCTTCTTCTCTCTGGCAGCCATGAGAAGAAGAGGGGATCACGGAGACGGA
AGGGAGGGCGGACAAGGAAGGCGGGGTTGGGTCACCCAGCAGGCCGCCGC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCTCGTAGTGCTACCTGTG
CTCTGACGGGAGCAGCCACAGTCCTGGCTGCCTCAGCTACCAGCGCTGAG
ATGCAAGGGTGAGGGGGAGGACGGGAGGGAGGGAGAGAGGTTGAGGAAGG
GGTGGGGGGGAAGCAGGGAGGGAAAATATGGAACGCGTGCTCCCTCATAC
CTATTGCCCACAATTCGCACAGGGAGCTTGAGGTCCGGGAAGGCGCCAGG
GCCAAGGACCACCGACCCAAGGTACGCCTTGCCCTCCCCCCCTCCTCCCC
GCCGCNCCCCCCCCC

Coding sequence (CDS) from alignment at CM002473.1:23679..24743-

>rna7672 ID=rna7672|Name=rna7672|organism=Nannochloropsis gaditana|type=CDS|length=2060bp|location=Sequence derived from alignment at CM002473.1:23679..24743- (Nannochloropsis gaditana)
GGAGCTTGAGGTCCGGGAAGGCGCCAGGGCCAAGGACCACCGACCCAAGG
TACGCCTTGCCCTCCCCCCCTCCTCCCCGCCGCNCCCCCCCCCGCCTTCC
GCCCCCCGGTACACCTGCCTGCTCGCCTCTCCCACGCCGCCGCCGCCGCC
ATCTCCCCCCTCCTAGTCTCGGCAGCGTCCTCTCCGCCCTCTGCTCCTCC
CTCCTTCTTCTCTCTGGCAGCCATGAGAAGAAGAGGGGATCACGGAGACG
GAAGGGAGGGCGGACAAGGAAGGCGGGGTTGGGTCACCCAGCAGGCCGCC
GCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATCTCGTAGTGCTACCTG
TGCTCTGACGGGAGCAGCCACAGTCCTGGCTGCCTCAGCTACCAGCGCTG
AGATGCAAGGGTGGCGGTGTAACGGCTATGATTCTTTGCATACTCCACCG
TCGGGGTGGCATCCTCTCCTTCGTGCAGATGCGTCCACCGCCTGCAACGT
TGGGTCTTACGCGAGGGAGCTTGAGGTCCGGGAAGGCGCCAGGGCCAAGG
ACCACCGACCCAAGGTACGCCTTGCCCTCCCCCCCTCCTCCCCGCCGCNC
CCCCCCCCGCCTTCCGCCCCCCGGTACACCTGCCTGCTCGCCTCTCCCAC
GCCGCCGCCGCCGCCATCTCCCCCCTCCTAGTCTCGGCAGCGTCCTCTCC
GCCCTCTGCTCCTCCCTCCTTCTTCTCTCTGGCAGCCATGAGAAGAAGAG
GGGATCACGGAGACGGAAGGGAGGGCGGACAAGGAAGGCGGGGTTGGGTC
ACCCAGCAGGCCGCCGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATC
TCGTAGTGCTACCTGTGCTCTGACGGGAGCAGCCACAGTCCTGGCTGCCT
CAGCTACCAGCGCTGAGATGCAAGGGTGGCGGTGTAACGGCTATGATTCT
TTGCATACTCCACCGTCGGGGTGGCATCCTCTCCTTCGTGCAGATGCGTC
CACCGCCTGCAACGTTGGGTCTTACGCGAGGGAGCTTGAGGTCCGGGAAG
GCGCCAGGGCCAAGGACCACCGACCCAAGGTACGCCTTGCCCTCCCCCCC
TCCTCCCCGCCGCNCCCCCCCCCGCCTTCCGCCCCCCGGTACACCTGCCT
GCTCGCCTCTCCCACGCCGCCGCCGCCGCCATCTCCCCCCTCCTAGTCTC
GGCAGCGTCCTCTCCGCCCTCTGCTCCTCCCTCCTTCTTCTCTCTGGCAG
CCATGAGAAGAAGAGGGGATCACGGAGACGGAAGGGAGGGCGGACAAGGA
AGGCGGGGTTGGGTCACCCAGCAGGCCGCCGCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCATCTCGTAGTGCTACCTGTGCTCTGACGGGAGCAGCCA
CAGTCCTGGCTGCCTCAGCTACCAGCGCTGAGATGCAAGGGTGGCGGTGT
AACGGCTATGATTCTTTGCATACTCCACCGTCGGGGTGGCATCCTCTCCT
TCGTGCAGATGCGTCCACCGCCTGCAACGTTGGGTCTTACGCGAGGGAGC
TTGAGGTCCGGGAAGGCGCCAGGGCCAAGGACCACCGACCCAAGGTACGC
CTTGCCCTCCCCCCCTCCTCCCCGCCGCNCCCCCCCCCGCCTTCCGCCCC
CCGGTACACCTGCCTGCTCGCCTCTCCCACGCCGCCGCCGCCGCCATCTC
CCCCCTCCTAGTCTCGGCAGCGTCCTCTCCGCCCTCTGCTCCTCCCTCCT
TCTTCTCTCTGGCAGCCATGAGAAGAAGAGGGGATCACGGAGACGGAAGG
GAGGGCGGACAAGGAAGGCGGGGTTGGGTCACCCAGCAGGCCGCCGCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCATCTCGTAGTGCTACCTGTGCTC
TGACGGGAGCAGCCACAGTCCTGGCTGCCTCAGCTACCAGCGCTGAGATG
CAAGGGTGGCGGTGTAACGGCTATGATTCTTTGCATACTCCACCGTCGGG
GTGGCATCCTCTCCTTCGTGCAGATGCGTCCACCGCCTGCAACGTTGGGT
CTTACGCGAG

Synonyms

Publications