rna7671, rna7671 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna7671
Unique Name	rna7671
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1653
Alignment location	CM002473.1:10040..12525 -

Link to JBrowse

Properties


Property Name	Value
Product	lysophospholipase 1
Orig transcript id	gnl\|cribi\|Naga_100436g1.9344.mrna
Orig protein id	gnl\|cribi\|Naga_100436g1.9344
Gene	LysoPL1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002473.1	supercontig	CM002473.1:10040..12525 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
LysoPL1	gene7427	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM23023.1	cds7651	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna7671	rna7671-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002473.1:10040..12525-
coding sequence from alignment at CM002473.1:10040..12525-

mRNA sequence

>rna7671 ID=rna7671|Name=rna7671|organism=Nannochloropsis gaditana|type=mRNA|length=1653bp
CCCTCCCTCCTCGCCCGCCTGCGTCGCTGCCTGGGCCGTGGCCTCTTCTC
CCTGACCGCCGCTTTCCGCCAGTGCTTCTCCAACCTCCTGACCCCGCCCT
TCTTCTTCCTCGTGGTCACCACCTTCACCTTCTACGGCGCCTTCCAGCCC
CTTGAGACCTTCGCGGTCAGCTACTTGAAAGCCCACCAGGGCTTTACCTC
CACGCACGCCTCCCTCTGCGCCTCCATTCTCCCCTCCCTCTCCGTCCTCC
TCTCCCCCCCCTATGGGTGCCCTGGTCGACAAGGAGCTGGCCCCTTTCTC
CTCCGCCCGCCCTCGCTCCTGGCGTCGGACCTACCTGTGGCCCCCCGGCT
CCACGCTCCTCTGGTCCATGCTCCTGACCGCCCTCGGACTCGTCTGCCTC
CTCCCCGCCCCCTCCCAGGCCCTAAGCTGGATCCCGGGCTTCTTCCTCGT
CTCGCTCGGCTACGCCTTTTCCTGCGCCTCGATTTGGACGGCCATCCCAT
ACTTCGTCCCCGACCGGTCCCTCGGTCTCGCTCTCGGGATGATCCACGCC
ATCGACGACGCCGCCATCCTGGCCGTCCAGGTGGAAGTGGGGCGGCTCTT
GGACCAGGCGCGGGAGGAGGCGGAGGCGCTGGGATCGGCGGGAGAAGCAG
AGCTGATGGAGACCCTGGAGGACTTGGAGTACGAGAGGAGCGTCTTGCCC
ATGTTGATTGGCCTGGCGGTGGTGGCGGCTCTGGCCACGCTGCCTGTCAT
GTCGGCCTTGAAGAAGAAACTTTCGGCGGGAGGTTTGGAGTTCGCCTAGG
AGGGCGAGGGGAGGGAGAAAAGGAGGGAGGACAGGACGAAAGAGAAAACG
TCGGGAGATGTCCGCTCTGGGTCTGGAAGGTGGCATGCGGAGAAGGAGGA
AAATGTCAAGAGAGAGAAGATGGGTGGGAGGACTATGGCGTGTTTACTCT
CAAGTCGAATCCTGTGACGACAGCTGTTGGAAGCAGGAATGGAGGCGCAC
TTAAGTGTGGAGCCTAAGGTACATTCATACATAGTACGGTAGGGTGCGGG
ATGTCTTCAAAAGTCGAATGTTAGAGGAGGGTGAGATGTGGGTCGAAGGA
TCGGCTGGCACCACAGGAAAATGGAAATATGAATTAGGACGGCGTAGGGC
GGGAGGTGTAAGTACAAATGGGGCGATGCAGGAGGGAACAAGTGTAAGAA
GGGGAAGCTGAGGATAGGAGAAAAAGGGGAATAGGCGGGGAAGGCAAAGT
GAACTAGGTCCTGGACGGGAGCTGTAAGTACAAATGGGGCAATGCGGGAG
GGGACGAGTGTGAAAACTGGAAGCTAAGGATAGGAGAAAAAGGGGAATAG
GCGGGGAAGTCAAAGTGAACTAGGTCCTGCACGGGAGGTGTAAGCAGATT
ACAAATGGGGCGATGCGGGAGGGGACGAGTGTCAAAACGGGCAGCTGAGG
ATGGGAGAAGAAGAGAAAAAGGCGGGGAAGGAAAACTCGATCAAACGGGA
CAGTGTCACACCTTCCACCGAATGAGGAGCTCGGATTTGTCAAGGATCAA
TACATTCTTCGCGCAATCGTCTTTTTTTTTCCTGTTTCTTCAATATGCTT
TTTCCCGTGGATGACCCAGTCGAAATTCCACAACATCCTGACCGCAACGG
ATG

protein sequence of rna7671

>rna7671-protein ID=rna7671-protein|Name=rna7671|organism=Nannochloropsis gaditana|type=polypeptide|length=748bp
MNKTPLYTNLRSGEDTRKARATFDSSQDALSSRGVERSEALSGTAQGGKF
DDESSRALLARETTSSGATVLGEELTFETQNFAAADFIQDYAIIFQAPLG
TPLRMDVTVVPLVTRDGEPSLSLGTAKSMVCLPGSAEQGLSNIDAGVPKR
ISAEAACPVFPMRADSQSRVLDSDSFDGLHPEEKEWVEQRMLKTGPKLAD
FIERNLFPMSVSTPPDLKVAITVSGGGKRSVFNGGGVLAGLAEAGVLDLA
TWISGASGGSWLLGGLYENSMQKDGLDIDSFFAERDMEMGKSLFDGTFSA
NDVLTNLGVNGWFIPTVKPFKTQPSAAATSASIMCQTELKFQSAAIKSLQ
TKTYAFAEYWGRAVAFQLLAQDGGLGTTMSGLLNHNLLADHNAPLPFMLI
QTDQGEVPYFLEVSPFDVSVHKGDVHVSYPTALLGTDVSDASQNCTIQSD
QLAWIMGLSSWLLPLSVQMSGGLLDTLLCGATGDICKPLAINNPFLGHTG
QSQAADPQELFSAAETKVVDGGVTYNDPLWPFITPTRKADVAIVIDQGGA
EGDPPLSMAPPATCAADGAGTCAVGSSSDEGLSNTCCNTCVSVTGFGCWP
TSDMSQNNLFRFSSYSDEHTLPGDILTANLNASTLTSKVSFFGCREPNVT
AIVYIPNRVVSSAKGGFSALRGSMEPNDYFDLLGGTPLSASDIHDVVQNG
KDQVSAPDFNRCVACLFAASLPENNRETFWDATSDCTDCIETYCQPLQ

mRNA from alignment at CM002473.1:10040..12525-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna7671 ID=rna7671|Name=rna7671|organism=Nannochloropsis gaditana|type=mRNA|length=2486bp|location=Sequence derived from alignment at CM002473.1:10040..12525- (Nannochloropsis gaditana)
ATGAATAAGACACCCCTCTACACGAATTTACGAAGTGGAGAGGATACACG
AAAGGCACGTGCAACCTTTGATTCTTCACAAGATGCTTTGAGTAGCCGGG
GTGTTGAGAGGAGCGAAGCGCTCTCAGGCACCGCGCAGGGCGGCAAATTT
GATGATGAGTCCTCACGGGCTCTACTGGCCCGCGAAACCACAAGTAGCGG
CGCAACTGTTCTGGGAGAGGAGCTAACCTTTGAAACGCAGAACTTTGCTG
CTGCTGATTTTATTCAGGACTACGCTATCATCTTCCAGGCTCCACTCGGA
ACACCGCTGAGAATGGATGTAACAGTCGTCCCCCTTGTAACACGCGACGG
CGAACCATCGCTTTCTCTTGGGACAGCGAAGAGCATGGTCTGTCTTCCTG
GCAGTGCAGAACAAGGGCTCTCGAATATCGATGCTGGTGTTCCTAAGAGG
ATTTCCGCGGAGGCTGCCTGTCCGGTGTTCCCTATGCGAGCGGACTCGCA
ATCTCGAGTCTTGGACAGTGACTCATTCGATGGCCTTCATCCCGAGGAGA
AGGAATGGGTGGAGCAGCGAATGCTGAAGACCGGGCCCAAGCTCGCTGAT
TTTATAGAGCGCAATCTCTTCCCGATGAGCGTTTCGACCCCTCCTGATCT
CAAAGTGGCCATCACGGTTTCAGGGGGAGGGAAGCGTTCTGTTTTTAATG
GGGGAGGGGTCTTAGCTGGTTTGGCTGAAGCGGGTGTTCTGGATTTGGCA
ACGTGGATCTCAGGAGCCTCGGGGGGAAGTTGGCTTTTGGGAGGGTTGTA
CGAGAACAGCATGCAGAAGGACGGTTTAGATATAGACTCTTTCTTTGCAG
AGCGTGACATGGAGATGGGCAAGAGCCTTTTTGACGGCACTTTTAGCGCG
AATGATGTTCTAACCAATTTGGGCGTGAATGGGTGGTTCATCCCGACGGT
CAAACCGTTCAAAACTCAGCCTTCAGCGGCAGCAACATCAGCCAGCATTA
TGTGTCAAACTGAGCTCAAATTCCAAAGCGCAGCGATCAAATCTTTGCAG
ACAAAAACCTACGCATTTGCCGAATATTGGGGCCGGGCTGTGGCTTTTCA
GTTACTGGCACAAGATGGCGGTCTGGGTACTACTATGTCAGGGCTGCTCA
ATCACAACTTGCTTGCCGATCACAACGCCCCCTTGCCCTTTATGTTGATA
CAAACTGACCAGGGAGAAGTGCCCTATTTCTTAGAGGTTTCGCCATTTGA
TGTGAGCGTGCATAAGGGGGACGTGCATGTTTCTTACCCTACAGCACTGC
TGGGAACCGATGTTTCTGATGCGAGTCAGAACTGTACAATCCAATCTGAT
CAACTAGCGTGGATCATGGGCTTGTCATCATGGCTTCTTCCCTTATCTGT
ACAAATGAGTGGGGGCTTACTAGATACGCTTCTTTGCGGAGCAACGGGAG
ATATATGCAAACCATTAGCGATAAATAATCCTTTTCTTGGACATACGGGG
CAGAGTCAAGCTGCAGATCCACAGGAGTTGTTCAGCGCAGCTGAAACAAA
AGTGGTAGACGGCGGTGTTACCTACAATGATCCTTTGTGGCCATTTATCA
CGCCAACACGAAAGGCGGACGTGGCGATCGTCATTGACCAAGGTGGGGCA
GAGGGTGATCCACCCTTGTCGATGGCCCCCCCCGCCACCTGCGCAGCTGA
TGGAGCAGGAACATGTGCTGTTGGATCATCCTCAGATGAGGGCTTGAGCA
ACACGTGCTGCAACACCTGCGTGTCCGTTACCGGTTTCGGTTGTTGGCCG
ACATCGGACATGAGCCAGAATAATCTGTTCCGCTTTTCTTCCTATAGCGA
TGAACACACTTTACCAGGTGATATTCTAACAGCAAACCTAAATGCTTCTA
CGCTTACCTCAAAAGTGAGTTTCTTTGGATGCCGCGAGCCCAATGTCACG
GCGATTGTGTATATTCCCAATCGGGTGGTTTCGAGCGCGAAAGGCGGATT
TTCAGCACTTCGCGGCTCCATGGAGCCAAACGACTACTTTGACCTTCTTG
GAGGAACACCACTTTCAGCATCCGATATTCATGATGTAGTCCAAAACGGA
AAAGACCAAGTGAGTGCACCTGACTTCAACAGATGCGTCGCCTGCTTGTT
CGCAGCCTCTTTGCCGGAAAACAACAGAGAAACCTTCTGGGATGCCACGT
CAGATTGTACTGACTGCATCGAGACCTACTGCCAACCATTACAATGAGTG
GAGCTGGTACAAGGTGAAATATTTCGCAGACGTTTAGCCTCTAGGCATAC
AAAAATACAAGGGTCTAGCAGAAGTATCTGTAGGCATCTGAGCGACTATC
CAAGTCTAAGCATTCGAAAATCCCAGGATCCATTTCCTCCGCATCCGTTG
CGGTCAGGATGTTGTGGAATTTCGACTGGGTCATCCACGGGAAAAAGCAT
ATTGAAGAAACAGGAAAAAAAAAGACGATTGCGCGA

Coding sequence (CDS) from alignment at CM002473.1:10040..12525-

>rna7671 ID=rna7671|Name=rna7671|organism=Nannochloropsis gaditana|type=CDS|length=2247bp|location=Sequence derived from alignment at CM002473.1:10040..12525- (Nannochloropsis gaditana)
ATGAATAAGACACCCCTCTACACGAATTTACGAAGTGGAGAGGATACACG
AAAGGCACGTGCAACCTTTGATTCTTCACAAGATGCTTTGAGTAGCCGGG
GTGTTGAGAGGAGCGAAGCGCTCTCAGGCACCGCGCAGGGCGGCAAATTT
GATGATGAGTCCTCACGGGCTCTACTGGCCCGCGAAACCACAAGTAGCGG
CGCAACTGTTCTGGGAGAGGAGCTAACCTTTGAAACGCAGAACTTTGCTG
CTGCTGATTTTATTCAGGACTACGCTATCATCTTCCAGGCTCCACTCGGA
ACACCGCTGAGAATGGATGTAACAGTCGTCCCCCTTGTAACACGCGACGG
CGAACCATCGCTTTCTCTTGGGACAGCGAAGAGCATGGTCTGTCTTCCTG
GCAGTGCAGAACAAGGGCTCTCGAATATCGATGCTGGTGTTCCTAAGAGG
ATTTCCGCGGAGGCTGCCTGTCCGGTGTTCCCTATGCGAGCGGACTCGCA
ATCTCGAGTCTTGGACAGTGACTCATTCGATGGCCTTCATCCCGAGGAGA
AGGAATGGGTGGAGCAGCGAATGCTGAAGACCGGGCCCAAGCTCGCTGAT
TTTATAGAGCGCAATCTCTTCCCGATGAGCGTTTCGACCCCTCCTGATCT
CAAAGTGGCCATCACGGTTTCAGGGGGAGGGAAGCGTTCTGTTTTTAATG
GGGGAGGGGTCTTAGCTGGTTTGGCTGAAGCGGGTGTTCTGGATTTGGCA
ACGTGGATCTCAGGAGCCTCGGGGGGAAGTTGGCTTTTGGGAGGGTTGTA
CGAGAACAGCATGCAGAAGGACGGTTTAGATATAGACTCTTTCTTTGCAG
AGCGTGACATGGAGATGGGCAAGAGCCTTTTTGACGGCACTTTTAGCGCG
AATGATGTTCTAACCAATTTGGGCGTGAATGGGTGGTTCATCCCGACGGT
CAAACCGTTCAAAACTCAGCCTTCAGCGGCAGCAACATCAGCCAGCATTA
TGTGTCAAACTGAGCTCAAATTCCAAAGCGCAGCGATCAAATCTTTGCAG
ACAAAAACCTACGCATTTGCCGAATATTGGGGCCGGGCTGTGGCTTTTCA
GTTACTGGCACAAGATGGCGGTCTGGGTACTACTATGTCAGGGCTGCTCA
ATCACAACTTGCTTGCCGATCACAACGCCCCCTTGCCCTTTATGTTGATA
CAAACTGACCAGGGAGAAGTGCCCTATTTCTTAGAGGTTTCGCCATTTGA
TGTGAGCGTGCATAAGGGGGACGTGCATGTTTCTTACCCTACAGCACTGC
TGGGAACCGATGTTTCTGATGCGAGTCAGAACTGTACAATCCAATCTGAT
CAACTAGCGTGGATCATGGGCTTGTCATCATGGCTTCTTCCCTTATCTGT
ACAAATGAGTGGGGGCTTACTAGATACGCTTCTTTGCGGAGCAACGGGAG
ATATATGCAAACCATTAGCGATAAATAATCCTTTTCTTGGACATACGGGG
CAGAGTCAAGCTGCAGATCCACAGGAGTTGTTCAGCGCAGCTGAAACAAA
AGTGGTAGACGGCGGTGTTACCTACAATGATCCTTTGTGGCCATTTATCA
CGCCAACACGAAAGGCGGACGTGGCGATCGTCATTGACCAAGGTGGGGCA
GAGGGTGATCCACCCTTGTCGATGGCCCCCCCCGCCACCTGCGCAGCTGA
TGGAGCAGGAACATGTGCTGTTGGATCATCCTCAGATGAGGGCTTGAGCA
ACACGTGCTGCAACACCTGCGTGTCCGTTACCGGTTTCGGTTGTTGGCCG
ACATCGGACATGAGCCAGAATAATCTGTTCCGCTTTTCTTCCTATAGCGA
TGAACACACTTTACCAGGTGATATTCTAACAGCAAACCTAAATGCTTCTA
CGCTTACCTCAAAAGTGAGTTTCTTTGGATGCCGCGAGCCCAATGTCACG
GCGATTGTGTATATTCCCAATCGGGTGGTTTCGAGCGCGAAAGGCGGATT
TTCAGCACTTCGCGGCTCCATGGAGCCAAACGACTACTTTGACCTTCTTG
GAGGAACACCACTTTCAGCATCCGATATTCATGATGTAGTCCAAAACGGA
AAAGACCAAGTGAGTGCACCTGACTTCAACAGATGCGTCGCCTGCTTGTT
CGCAGCCTCTTTGCCGGAAAACAACAGAGAAACCTTCTGGGATGCCACGT
CAGATTGTACTGACTGCATCGAGACCTACTGCCAACCATTACAATGA

Synonyms

Publications