rna767, rna767 (mRNA) Nannochloropsis gaditana

Overview
Namerna767
Unique Namerna767
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length937
Alignment locationCM002456.1:375767..377541 +

Link to JBrowse

Properties
Property NameValue
ProductAminoacyl-tRNA synthetase, class Ic
Orig transcript idgnl|cribi|Naga_100035g30.3389.mrna
Orig protein idgnl|cribi|Naga_100035g30.3389
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:375767..377541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100035g30gene735Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna767rna767-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM29925.1cds767Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna767 ID=rna767|Name=rna767|organism=Nannochloropsis gaditana|type=mRNA|length=937bp
TGAGACGGTAGTCGTGTGGGCCAGTCCAACCTACGATCGAATCGTTGGGC
TGGGGTAGACAAAAGGAGACATTGTGCATCGACACTTGTTCCAATCTTTC
CTGCCTTACCCACGCCAATTCGACAATATCTCGCATATGCATACAGGCAC
TCATGGCGTCGGCGCTTTTGGCCAAGAAAGCGCTGCGTCAAGCCCTGGCT
GTGGGAGCACACAGCCAAGCAACAGTGGGGAGACGTTCAGGAGCAGTAAT
CAATAGTACTGGGAGCAGCCGACGCACACTCGCTTCGGTGAAGGATGTGA
CCGTCAATGTGACATTTATCAACCACGAGGGCTTAAGGATAACGGTGCCG
GGCCGAGTAGGCCAGAGCCTTCTGGATGTGGCGCAGATGCACGATATTGA
GCTAGAGTCGGGATGTGGAGGCGGTGGGGCGGTACAGCAGAAGAAGCATT
CTGAGCGGTGGACGGAGGATTTATTCGGGCGCGGCCCTTGCTGTCATTTT
TGCCACGTAAAAATCCCTTCCCCTTGGATCAATACCATTCATGACAAGCA
ACCAGCAACCGAGAAGGAGCACGAATTGCTGGAAGAGCACTGGCAGGAGG
AAGCCACAGACAACTCCCGGCTTGGCTGTCAAGTCATGCTGACGAAAAAC
CTCGACGGCATGCAGGTCTTCATCCCCGATGGACCGCCTGCGGACTGTCC
GTAGAGAGATCATTACAATTTGAGAGCTGCCACAGGCGGGCTGCGGGAGA
GGTGCTGCTCGCTCAAGGTCGGCAACAAACAGGTTGAAACCGGGATTTGA
TGCAAAGTAGGTTTCGCGATATCGTTGAAGCGATCATGATTATGAATGGT
AATGCTGCCGACAAGATGGAGAGTCTGTGGGCCAGGCCATGAATAAAAAA
GAAAAAGAAGTGCACATTTTTTGGCAGTGTCCGTCGA
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protein sequence of rna767

>rna767-protein ID=rna767-protein|Name=rna767|organism=Nannochloropsis gaditana|type=polypeptide|length=442bp
MPSNACLHSGSNIQRYSIINLWKDGTTLSRPVSPSLPLLRTAPGTQRSST
SSSQGAHNNTKSTSSTVSHGPLSAGGTITRGANGLIEGKEYFVSPLSADA
KYALARSVGEECIQEQELRLLLEKKPHPIVYDGFEPSGRMHIAQGVMRAI
NANKLTQCGCVFKFWVADWFALLNNKMGGDLKKIQTVGRYMIEIWRAVGM
DMQNVEFLWASEEINAHSDEYWSRVMDIARINNLARIQRCCTIMGRKDTE
EMSAAQIMYPCMQCADVFFLKADICQLGLDQRKVNMLAREYCDSVKIKFK
PVIISHHMLMGLKEGQEKMSKSDPDSAIFMEDSEADLKRKIKKAFCPPEV
IEGNPIIDYVKHIIFGYYGKIEIEFQGNVRKEYVDYEEFEADYKGGKIHP
GDLKPAVTMALNSILEPVRKHFESDPVAKKLLDQVKKYKTTR
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mRNA from alignment at CM002456.1:375767..377541+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna767 ID=rna767|Name=rna767|organism=Nannochloropsis gaditana|type=mRNA|length=1775bp|location=Sequence derived from alignment at CM002456.1:375767..377541+ (Nannochloropsis gaditana)
CATGCTTTTTGGAAACTGGAAGCCGAGAGGGATGTGGCAGGGTGTTTGTT
CCCAGCCTCGCCCTTTGTTGCAACGCTTTGTCATCCATCGAACACATTTG
ATGATCGTGATCGTAGACTTTATGCTCGAAAATTCACACACAGACAAATA
TGTCGGTCGATAAGCGCTTCTCGGTCCAAGCCACGGCGCGTTTTAGCGTC
CTCGAAGCTCCAGGAGGTAGGTACGCCCCACCTGCCTATGCGCCTGCCGT
GGCACCTCGTTTTCCTTCATCCCTTTTCGCGCCGTGGACGCCCCGATGCC
TTCAAATGCATGTTTGCATAGTGGGAGTAACATTCAGCGGTACAGTATTA
TAAATTTATGGAAGGACGGTACGACCCTCTCACGCCCTGTCTCCCCCTCA
CTACCTTTACTCCGCACCGCCCCAGGCACACAAAGGTCTTCTACCTCTTC
ATCTCAAGGAGCTCATAATAATACCAAATCCACGTCTTCAACGGTCTCCC
ATGGGCCGCTTTCTGCCGGAGGCACCATTACACGGGGAGCAAACGGTCTT
attgaagggaaggaatacTTTGTCTCCCCGCTTTCCGCAGACGCCAAGTA
TGCCCTGGCCCGTAgtgtgggagaggagtgCATCCAAGAGCAGGAACTGC
GGTTGCTCCTGGAGAAAAAACCTCATCCCATTGTATACGACGGATTTGAA
CCTTCGGGACGTATGCATATAGCTCAGGGGGTGATGCGTGCCATCAATGC
CAACAAACTCACACAGTGTGGATGCGTCTTCAAATTCTGGGTGGCAGACT
GGTTCGCGTTGTTGAACAACAAAATGGGTGGAGACTTGAAAAAAATTCAA
ACGGTTGGGAGGTACATGATTGAAATCTGGCGGGCGGTCGGAATGGACAT
GCAAAACGTGGAGTTTTTGTGGGCGTCGGAGGAGATCAATGCCCACTCGG
ACGAATACTGGTCTCGAGTCATGGATATTGCCCGCATCAACAACCTGGCC
AGGATACAACGCTGCTGTACGATTATGGGGCGAAAAGATACGGAGGAGAT
GAGTGCCGCGCAAATCATGTACCCGTGTATGCAATGTGCCGACGTGTTCT
TCCTTAAAGCGGACATTTGCCAACTAGGCCTGGATCAACGGAAAGTGAAC
ATGCTGGCCCGCGAATACTGCGATAGCGTGAAAATCAAATTTAAGCCAGT
CATTATCTCGCATCACATGCTCATGGGCTTGAAAGAAGGTCAAGAAAAGA
TGAGTAAGTCTGACCCAGACTCCGCCATTTTCATGGAGGATTCCGAAGCG
GATTTGAAACGGAAAATCAAGAAAGCGTTCTGCCCTCCGGAAGTCATTGA
AGGTAATCCAATTATTGATTACGTGAAGCATATTATCTTTGGATACTACG
GTAAAATTGAGATCGAATTTCAAGGGAATGTGAGAAAAGAGTACGTGGAT
TACGAAGAGTTCGAGGCAGACTACAAGGGTGGGAAGATTCATCCGGGAGA
CTTAAAACCGGCCGTGACGATGGCACTGAATAGCATTTTGGAGCCAGTTC
GAAAGCATTTTGAAAGCGATCCGGTAGCAAAGAAACTGTTGGATCAGGTA
AAGAAATACAAGACGACCCGGTAGGCGAACGCAATAGTGAATGAGGAGGT
TAAATGAATGGGATGAGAAGGGACATAAAAATAGACTATCAACCTTTTCA
GAGCTAATGTATCCTTTTCAAACTGCATTAAGTATAAAGTAATGTTGAAA
ATGCGACACTGCAGCGATGGATGAT
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Coding sequence (CDS) from alignment at CM002456.1:375767..377541+

>rna767 ID=rna767|Name=rna767|organism=Nannochloropsis gaditana|type=CDS|length=1329bp|location=Sequence derived from alignment at CM002456.1:375767..377541+ (Nannochloropsis gaditana)
ATGCCTTCAAATGCATGTTTGCATAGTGGGAGTAACATTCAGCGGTACAG
TATTATAAATTTATGGAAGGACGGTACGACCCTCTCACGCCCTGTCTCCC
CCTCACTACCTTTACTCCGCACCGCCCCAGGCACACAAAGGTCTTCTACC
TCTTCATCTCAAGGAGCTCATAATAATACCAAATCCACGTCTTCAACGGT
CTCCCATGGGCCGCTTTCTGCCGGAGGCACCATTACACGGGGAGCAAACG
GTCTTattgaagggaaggaatacTTTGTCTCCCCGCTTTCCGCAGACGCC
AAGTATGCCCTGGCCCGTAgtgtgggagaggagtgCATCCAAGAGCAGGA
ACTGCGGTTGCTCCTGGAGAAAAAACCTCATCCCATTGTATACGACGGAT
TTGAACCTTCGGGACGTATGCATATAGCTCAGGGGGTGATGCGTGCCATC
AATGCCAACAAACTCACACAGTGTGGATGCGTCTTCAAATTCTGGGTGGC
AGACTGGTTCGCGTTGTTGAACAACAAAATGGGTGGAGACTTGAAAAAAA
TTCAAACGGTTGGGAGGTACATGATTGAAATCTGGCGGGCGGTCGGAATG
GACATGCAAAACGTGGAGTTTTTGTGGGCGTCGGAGGAGATCAATGCCCA
CTCGGACGAATACTGGTCTCGAGTCATGGATATTGCCCGCATCAACAACC
TGGCCAGGATACAACGCTGCTGTACGATTATGGGGCGAAAAGATACGGAG
GAGATGAGTGCCGCGCAAATCATGTACCCGTGTATGCAATGTGCCGACGT
GTTCTTCCTTAAAGCGGACATTTGCCAACTAGGCCTGGATCAACGGAAAG
TGAACATGCTGGCCCGCGAATACTGCGATAGCGTGAAAATCAAATTTAAG
CCAGTCATTATCTCGCATCACATGCTCATGGGCTTGAAAGAAGGTCAAGA
AAAGATGAGTAAGTCTGACCCAGACTCCGCCATTTTCATGGAGGATTCCG
AAGCGGATTTGAAACGGAAAATCAAGAAAGCGTTCTGCCCTCCGGAAGTC
ATTGAAGGTAATCCAATTATTGATTACGTGAAGCATATTATCTTTGGATA
CTACGGTAAAATTGAGATCGAATTTCAAGGGAATGTGAGAAAAGAGTACG
TGGATTACGAAGAGTTCGAGGCAGACTACAAGGGTGGGAAGATTCATCCG
GGAGACTTAAAACCGGCCGTGACGATGGCACTGAATAGCATTTTGGAGCC
AGTTCGAAAGCATTTTGAAAGCGATCCGGTAGCAAAGAAACTGTTGGATC
AGGTAAAGAAATACAAGACGACCCGGTAG
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Synonyms
Publications