rna7669, rna7669 (mRNA) Nannochloropsis gaditana

Overview
Namerna7669
Unique Namerna7669
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1297
Alignment locationCM002473.1:6642..7712 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100604g3.110.mrna
Orig protein idgnl|cribi|Naga_100604g3.110
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002473.1supercontigCM002473.1:6642..7712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100604g3gene7425Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna7669rna7669-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM23024.1cds7649Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna7669 ID=rna7669|Name=rna7669|organism=Nannochloropsis gaditana|type=mRNA|length=1297bp
TCGGCGACCTACCTTCTCGTTGCTGTCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTCTCATTTCTCCCCT
CGCATATATTCTCACCGACCAGACCATCCTCTCCTTCTATAGTTTCTTCT
CGCTCTCTTTTGACATGACAGAAAAGGGCGAGTCTCCAAAGAGAATGCGA
CGCCGACTCGTTCCTGCTTCCACCCCTCCCCTTCCATCCTCTCGCCGCTC
TCTCACTTCCTCTCCACACTTCACTACCCTCTCCTCCCTCCCTCTCTTCC
TCCCTCCCTCTCTTACTCCCTCCTTCGCTCCTTTCCCCCCTCAGGAAGTA
TCCTTGACCGCCCTTCCCAGGACATGGTGGGGATGTTGGGGGGATGGAAT
GGAAAAGCGTCGGACACTCCCACGTCCATATCGCCGACGACGCTCCCGAC
CGCAGCCTCGACCGAACATGGCGCTGGCAAAGCAGCCGATGGCAGCTCGT
ATGCACAGTCCGCCGCTCGACTCGGTTGAAGATTCGCTCGTCATGTCCTT
TGCGAGGGGGACCATGCTTGATTCGGATAAACAATGGCACGGTGCCCTTC
TGCTGAGCCGTTGCTTATCTGGATCAAGCATAGTTGCTGCTCGCAACCGG
CCTGAAGAGCGAATCTTCTTGGGAGTCGAGAGATAGGCTGTCCGTATTGG
CTGCCGTCGGCTGCATCGTCGGCGCCTTGGCCGGTTGGGGGTAGGTTTAG
GGATAGGGGAAGCGACGGACGTCCTCCTCCCCTCTTCTCCCCCTGCCCTG
CCTCTCTCCTACCTTCAAGCCGTTAGGCAAGGTGATTTTGAGCAAAAACG
GTACGTATTTTCTGGACAAGGAGGAGGATTTCTACACGATCTGGAAGGCA
TTAAAGAATGCGATCGGTCCTTTAAGTACAACCTGACCACCACGGCAAGC
GGGTGGAAGGAGGGAAGGAGGGAGGAAGGGAAGGAAGAGGGCCAGGGCGA
AGGGATGTACATACGGACAAAGGGGAGGGCCACGGCTGAGACTTCCATCC
CCCGACTCGGGCCCCTGCGTCGACCCTCCGGTCCTCCCGCCCTGAAGAAA
AGATACACGCCGAGGGGGCAGGAGGGGGAAGGACAGTGTGGAGGCCTGGG
AAAGAGATTAAATGGAGCATGCTTGGATGGGAGAGGAACGGAGAATATGG
AGGGAGTGTGTCATGAGGTGGAAGGCTGCGGTATAGGAGGCAAGCAGGCG
GGAAAGGGGTTGGGAACAGAAAAGAAAGGAGAACATGTGACGGGTGG
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protein sequence of rna7669

>rna7669-protein ID=rna7669-protein|Name=rna7669|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MASPSRLMSPTNTATTVTVTTGSAGEGSSDSLESDESSSANTSSSPARST
DDRSRAPRITRSRSGQLKEACEHAGTPGKSFDLHVTLPPDPSERGSPPSD
LGTPANPSAPRPGSLLRRHSDYPRKISHTKPSLDPKPITSHSVSFKEDHP
SKDEMPAPVTKYSRSLTMGAADLRGLKALKSPSSRSRGGFEPASPFQKDL
EARWLEAMAKRRRREEEASPEPRPPWPAQLARFASFSAIDTPRPPPVMAS
DSMSLLVDDVMPHALSRLMSGRITPKEFQEARALCLPGTWGHRALLWAAC
FAAFGAAYAKTIIAAVAPSLIEDFGISKSVYG
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mRNA from alignment at CM002473.1:6642..7712+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna7669 ID=rna7669|Name=rna7669|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp|location=Sequence derived from alignment at CM002473.1:6642..7712+ (Nannochloropsis gaditana)
TCATGCTTCTGGTACCTGTAGATCGAATCTTCCCTCTCATCGAGCATAAT
ATCCACTCCGCCATCTATCCGCAGGGATGGCCTCACCTTCCCGGCTCATG
AGTCCTACCAACACGGCCACCACCGTCACCGTCACGACCGGCAGCGCCGG
TGAAGGAAGCAGTGACAGCCTGGAATCAGATGAATCGTCCTCTGCTaata
cctcctcctcccccgcccgctcgACCGATGACCGATCCCGCGCTCCCCGC
ATCACTCGAAGCCGAAGCGGGCAGCTCAAGGAGGCATGCGAACATGCGGG
CACACCAGGGAAATCCTTCGACCTCCAcgtcaccctcccccccgacccta
gcgagagaggaagcccTCCTAGCGACCTCGGTACTCCAGCGAACCCGTCC
GCCCCTCGGCCAggctctctcctccgtcgACATTCAGATTACCCGCGGAA
GATCTCCCACACAAAGCCTTCCCTCGACCCGAAGCCCATCACCTCGCACT
CCGTCTCATTCAAGGAGGACCACCCGTCCAAGGACGAGATGCCCGCCCCC
GTAACCAAGTACTCGCGGTCTCTGACCATGGGAGCGGCCGACCTCCGCGG
GCTCAAAGCTCTCAAatcgccttcttccaggtCTCGCGGCGGCTTCGagc
cggcctcccccttccaaaaAGACCTGGAAGCGCGCTGgctggaggcgatg
gccaaacgccggcggcgggaggaggaagcctccCCCGAACCGCGCCCCCC
CTGGCCGGCCCAGTTGGCGCgcttcgcctctttctccgccattgacacgc
cccggcccccgcccgtCATGGCCTCGGACAGCATGTCCCTGCTCGTGGAC
GACGTGATGCcgcacgccctctcccgcctcatGTCCGGTCGGATCACCCC
CAAGGAGTTtcaggaggcgagggcgctCTGTCTGCCTGGCACCTGGGGAC
ATCGGGCGCTCCTGTGGGCGGCCTGTTTTGCGGCCTTCGGGGCTGCGTAC
GCCAAAACCATCATAGCCgccgtcgctccctctctgATCGAGGATTTCGG
CATCTCCAAGAGTGTGTACGG
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Coding sequence (CDS) from alignment at CM002473.1:6642..7712+

>rna7669 ID=rna7669|Name=rna7669|organism=Nannochloropsis gaditana|type=CDS|length=995bp|location=Sequence derived from alignment at CM002473.1:6642..7712+ (Nannochloropsis gaditana)
ATGGCCTCACCTTCCCGGCTCATGAGTCCTACCAACACGGCCACCACCGT
CACCGTCACGACCGGCAGCGCCGGTGAAGGAAGCAGTGACAGCCTGGAAT
CAGATGAATCGTCCTCTGCTaatacctcctcctcccccgcccgctcgACC
GATGACCGATCCCGCGCTCCCCGCATCACTCGAAGCCGAAGCGGGCAGCT
CAAGGAGGCATGCGAACATGCGGGCACACCAGGGAAATCCTTCGACCTCC
AcgtcaccctcccccccgaccctagcgagagaggaagcccTCCTAGCGAC
CTCGGTACTCCAGCGAACCCGTCCGCCCCTCGGCCAggctctctcctccg
tcgACATTCAGATTACCCGCGGAAGATCTCCCACACAAAGCCTTCCCTCG
ACCCGAAGCCCATCACCTCGCACTCCGTCTCATTCAAGGAGGACCACCCG
TCCAAGGACGAGATGCCCGCCCCCGTAACCAAGTACTCGCGGTCTCTGAC
CATGGGAGCGGCCGACCTCCGCGGGCTCAAAGCTCTCAAatcgccttctt
ccaggtCTCGCGGCGGCTTCGagccggcctcccccttccaaaaAGACCTG
GAAGCGCGCTGgctggaggcgatggccaaacgccggcggcgggaggagga
agcctccCCCGAACCGCGCCCCCCCTGGCCGGCCCAGTTGGCGCgcttcg
cctctttctccgccattgacacgccccggcccccgcccgtCATGGCCTCG
GACAGCATGTCCCTGCTCGTGGACGACGTGATGCcgcacgccctctcccg
cctcatGTCCGGTCGGATCACCCCCAAGGAGTTtcaggaggcgagggcgc
tCTGTCTGCCTGGCACCTGGGGACATCGGGCGCTCCTGTGGGCGGCCTGT
TTTGCGGCCTTCGGGGCTGCGTACGCCAAAACCATCATAGCCgccgtcgc
tccctctctgATCGAGGATTTCGGCATCTCCAAGAGTGTGTACGG
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Synonyms
Publications